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Group: BioinfoCIPF - library [1040 articles]

Nye artikler sendt inn av medlemmer i BioinfoCIPF -gruppen
  • Recent acceleration of human adaptive evolution
    Proceedings of the National Academy of Sciences, Vol. 104, No. 52. (26 December 2007), pp. 20753-20758.
    by John Hawks, Eric T Wang, Gregory M Cochran, Henry C Harpending, Robert K Moyzis
    posted to evolution human positive selection by hdopazo to the group BioinfoCIPF on 2008-02-04 17:33:37 as ** along with 9 people and 2 groups hpaces shoshin candypmcg balicea laharrin cannon qwermish wsjames coyotetraxx Oxford Virology Fasting, food and evolution
  • Evolution and Selection in Yeast Promoters: Analyzing the Combined Effect of Diverse Transcription Factor Binding Sites
    PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e7.
    by Daniela Raijman, Ron Shamir, Amos Tanay
    posted to evolution promotors by Garamonfok to the group BioinfoCIPF on 2008-01-25 20:03:47 as ***** along with 7 people aalibes chad_davis sebastien_vigneau lusk nklee maximilianh emptyhb
  • DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis
    BMC Bioinformatics, Vol. 8 (02 November 2007), 426.
    by Brad T Sherman, Da W Huang, Qina Tan, Yongjian Guo, Stephan Bour, David Liu, Robert Stephens, Michael W Baseler, Clifford H Lane, Richard A Lempicki
    posted to database expression functional_annotation microarray by ealloza to the group BioinfoCIPF on 2007-11-05 17:30:43 as *** along with 4 people hpaces jyuh jfr barriot
  • GENECODIS: A web-based tool for finding significant concurrent annotations in gene lists
    Genome Biology, Vol. 8 (04 January 2007), R3.
    by Pedro Carmona-Saez, Monica Chagoyen, Francisco Tirado, Jose M Carazo, Alberto Pascual-Montano
    posted to functional_annotation gene_list_analysis suite by ealloza to the group BioinfoCIPF on 2007-10-25 16:26:30 as ** along with 3 people yas aalibes jfr
  • Network modeling links breast cancer susceptibility and centrosome dysfunction.
    Nat Genet (7 October 2007)
    by Miguel Angel A Pujana, Jing-Dong J D Han, Lea M M Starita, Kristen N N Stevens, Muneesh Tewari, Jin Sook S Ahn, Gad Rennert, Víctor Moreno, Tomas Kirchhoff, Bert Gold, Volker Assmann, Wael M M Elshamy, Jean-François F Rual, Douglas Levine, Laura S S Rozek, Rebecca S S Gelman, Kristin C C Gunsalus, Roger A A Greenberg, Bijan Sobhian, Nicolas Bertin, Kavitha Venkatesan, Nono Ayivi-Guedehoussou, Xavier Solé, Pilar Hernández, Conxi Lázaro, Katherine L L Nathanson, Barbara L L Weber, Michael E E Cusick, David E E Hill, Kenneth Offit, David M M Livingston, Stephen B B Gruber, Jeffrey D D Parvin, Marc Vidal
    posted to cancer network by ealloza to the group BioinfoCIPF on 2007-10-22 11:33:34 as ** along with 6 people chrisamiller jfr cjeans nedwards jdiezperezj phoenixzxl
  • From microscopes to microarrays: dissecting recurrent chromosomal rearrangements
    Nat Rev Genet, Vol. 8, No. 11. (November 2007), pp. 869-883.
    by Beverly S Emanuel, Sulagna C Saitta
    posted to aberration duplication rearrangement review by ealloza to the group BioinfoCIPF on 2007-10-22 11:21:18 as **** along with 3 people giovenko rdiaz jdiezperezj
  • Technology: A new tool for analysing structural variation
    Nat Rev Genet, Vol. 8, No. 11. (November 2007), pp. 822-822.
    by Magdalena Skipper
    posted to acgh cnv technique by ealloza to the group BioinfoCIPF on 2007-10-22 11:16:32 as ** along with 1 person rdiaz
  • The discovery of microdeletion syndromes in the post-genomic era: review of the methodology and characterization of a new 1q41q42 microdeletion syndrome.
    Genet Med, Vol. 9, No. 9. (September 2007), pp. 607-616.
    by LG Shaffer, A Theisen, BA Bejjani, BC Ballif, AS Aylsworth, C Lim, M McDonald, JW Ellison, D Kostiner, S Saitta, T Shaikh
    posted to no-tag by ealloza to the group BioinfoCIPF on 2007-10-17 19:01:30 as **
  • Array comparative genomic hybridization and computational genome annotation in constitutional cytogenetics: suggesting candidate genes for novel submicroscopic chromosomal imbalance syndromes.
    Genet Med, Vol. 9, No. 9. (September 2007), pp. 642-649.
    by S Van Vooren, B Coessens, B De Moor, Y Moreau, JR Vermeesch
    posted to aberration acgh cytogenetics mining by ealloza to the group BioinfoCIPF on 2007-10-17 19:01:19 as **
  • How microRNAs choose their targets
    Nat Genet, Vol. 39, No. 10. (October 2007), pp. 1191-1192.
    by Ivo L Hofacker
    posted to microrna rna target by ealloza to the group BioinfoCIPF on 2007-10-17 18:00:07 as *** along with 6 people and 1 group dchughes rdiaz Garamonfok epigenetics heliopais yavanna microRNA
  • Pathway analysis of gene signatures predicting metastasis of node-negative primary breast cancer
    BMC Cancer, Vol. 7 (25 September 2007), 182.
    by Jack X Yu, Anieta M Sieuwerts, Yi Zhang, John WM Martens, Marcel Smid, Jan GM Klijn, Yixin Wang, John A Foekens
    posted to application cancer gene_set_analysis signature by ealloza to the group BioinfoCIPF on 2007-10-17 16:34:27 as **
  • Chromosomal Microdeletions and Genes Functions: A cluster of chromosomal microdeletions and the deleted genes functions
    European Journal of Human Genetics, Vol. aop, No. current.
    by Ruti Parvari, Eli Hershkovitz
    posted to aberration chromosome disease functional_annotation rearrangement by ealloza to the group BioinfoCIPF on 2007-10-02 17:32:06 as ***
  • Cancer systems biology: exploring cancer-associated genes on cellular networks.
    Cell Mol Life Sci, Vol. 64, No. 14. (July 2007), pp. 1752-1762.
    by E Wang, A Lenferink, M O'Connor-McCourt
    posted to systems_biology review interactome cancer by ealloza to the group BioinfoCIPF on 2007-09-17 18:16:29 as *** along with 2 people and 1 group diging_data jfr BTS-PT-AS-CS
  • Integrative analysis of the cancer transcriptome.
    Nat Genet, Vol. 37 Suppl (June 2005)
    by DR Rhodes, AM Chinnaiyan
    posted to transcriptome interactome integration cancer by ealloza to the group BioinfoCIPF on 2007-09-11 17:47:03 as ** along with 5 people and 1 group srp33 waghsk aalibes textoris shikin GeneGo
  • How to decide which are the most pertinent overly-represented features during gene set enrichment analysis
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Roland Barriot, David Sherman, Isabelle Dutour
    posted to gene_set_analysis algorithm by ealloza to the group BioinfoCIPF on 2007-09-11 15:08:29 as *** along with 8 people and 1 group AlexanderPico Eugene jfr heliopais jyuh barriot waghsk mcgannd Bioinformatics
  • Identification of aberrant chromosomal regions from gene expression microarray studies applied to human breast cancer
    Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2273-2280.
    by Andreas Buness, Ruprecht Kuner, Markus Ruschhaupt, Annemarie Poustka, Holger Sultmann, Achim Tresch
    posted to microarray meta_analysis human expression chromosome cancer amplification algorithm aberration by ealloza to the group BioinfoCIPF on 2007-09-11 11:07:15 as read along with 2 people jfr rdiaz
  • GENOMICS: DNA Duplications and Deletions Help Determine Health.
    Science, Vol. 317, No. 5843. (7 September 2007), pp. 1315-1317.
    by J Cohen
    posted to human duplication desease deletion cnv chromosome aberration by ealloza to the group BioinfoCIPF on 2007-09-10 11:44:37 as read along with 1 person and 3 groups dchughes Bioinformatics G4ID Genetics-of-Gambling
  • Automated de novo prediction of native-like RNA tertiary structures
    PNAS (28 August 2007), 0703836104.
    by Rhiju Das, David Baker
    posted to structure_prediction rna ab-initio by marcius to the group BioinfoCIPF on 2007-09-01 10:46:02 as ** along with 6 people and 1 group reyez jwm eckart_bindewald zwang physics Ema SGU-CIPF
  • The Hallmarks of Cancer
    Cell, Vol. 100, No. 1. (7 January 2000), pp. 57-70.
    by Douglas Hanahan, Robert A Weinberg
    posted to cancer by ealloza to the group BioinfoCIPF on 2007-08-27 11:35:04 as read along with 6 people and 1 group srp33 xico samoday psique jvonmoltke blackm0k WetBiology
  • Assessing the Significance of Conserved Genomic Aberrations Using High Resolution Genomic Microarrays
    PLoS Genetics, Vol. 3, No. 8. (1 August 2007), e143.
    by Mitchell Guttman, Carolyn Mies, Katarzyna Dudycz-Sulicz, Sharon J Diskin, Don A Baldwin, Christian J Stoeckert, Gregory R Grant
    posted to microarray conservation cancer aberration by ealloza to the group BioinfoCIPF on 2007-08-27 10:25:18 as read along with 3 people and 1 group jfr rdiaz zwang Bioinformatics
  • Functional profiling and gene expression analysis of chromosomal copy number alterations.
    Bioinformation, Vol. 1, No. 10. (2007), pp. 432-435.
    by L Conde, D Montaner, J Burguet-Castell, J Tárraga, F Al-Shahrour, J Dopazo
    posted to microarray expression copy_number chromosome cgh by ealloza to the group BioinfoCIPF on 2007-08-09 12:37:48 as read along with 1 person jfr
  • Tentative mapping of transcription-induced interchromosomal interaction using chimeric EST and mRNA data.
    PLoS ONE, Vol. 2 (2007)
    by P Unneberg, JM Claverie
    posted to territory map chromosome by ealloza to the group BioinfoCIPF on 2007-08-09 12:23:12 as **
  • FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments.
    Nucleic Acids Res (3 May 2007)
    by Fátima Al-Shahrour, Pablo Minguez, Joaquín Tárraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquín Dopazo
    posted to gene_list_analysis by ealloza to the group BioinfoCIPF on 2007-08-09 11:36:22 as read along with 3 people jyuh jfr heliopais
  • g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments.
    Nucleic Acids Res, Vol. 35, No. Web Server issue. (1 July 2007)
    by J Reimand, M Kull, H Peterson, J Hansen, J Vilo
    posted to gene_list_analysis by ealloza to the group BioinfoCIPF on 2007-08-09 11:30:57 as read along with 3 people jyuh jfr lp2
  • GSEA-P: A desktop application for Gene Set Enrichment Analysis
    Bioinformatics (20 July 2007), btm369.
    by Aravind Subramanian, Heidi Kuehn, Joshua Gould, Pablo Tamayo, Jill P Mesirov
    posted to microarray gene_set_analysis expression applet by ealloza to the group BioinfoCIPF on 2007-08-07 10:52:49 as read along with 8 people heliopais Eugene jyuh cassj schuylrp barriot waszak dmontaner
  • Computation of significance scores of unweighted Gene Set Enrichment Analyses
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Andreas Keller, Christina Backes, Hans P Lenhof
    posted to gene_set_analysis algorithm by ealloza to the group BioinfoCIPF on 2007-08-06 15:03:36 as **** along with 4 people heliopais jfr shigepong GeeSharpMinor
  • Evolution of chromosome organization driven by selection for reduced gene expression noise
    Nature Genetics, Vol. 39, No. 8. (27 July 2007), pp. 945-949.
    by Nizar N Batada, Laurence D Hurst
    posted to gene_order essential by ealloza to the group BioinfoCIPF on 2007-08-02 12:30:21 as read along with 5 people and 1 group jjray dpollard djkt lusk zwang EisenLab
  • EasyGO: Gene Ontology-based annotation and functional enrichment analysis tool for agronomical species
    BMC Genomics, Vol. 8 (24 July 2007), 246.
    by Xin Zhou, Zhen Su
    posted to gene_set_analysis functional_annotation by ealloza to the group BioinfoCIPF on 2007-07-30 12:40:38 as ** along with 1 person sgoetz
  • Functional annotation of regulatory pathways
    Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i377-386.
    by Jayesh Pandey, Mehmet Koyuturk, Yohan Kim, Wojciech Szpankowski, Shankar Subramaniam, Ananth Grama
    posted to pathway gene_set_analysis by ealloza to the group BioinfoCIPF on 2007-07-30 12:28:50 as *** along with 2 people carlk jyuh
  • Identifying the biologically relevant gene categories based on gene expression and biological data: an example on prostate cancer
    Bioinformatics, Vol. 23, No. 12. (1 June 2007), pp. 1503-1510.
    by D Huang, Tommy W Chow
    posted to human gene_list_analysis cancer by ealloza to the group BioinfoCIPF on 2007-07-06 17:56:39 as **
  • The role of microRNAs in cancer: No small matter
    European Journal of Cancer, Vol. 43, No. 10. (July 2007), pp. 1529-1544.
    by Erik A Wiemer
    posted to review microrna human cancer by ealloza to the group BioinfoCIPF on 2007-07-06 12:55:40 as read along with 4 people srp33 cerami maralena mdphillips
  • Improving gene set analysis of microarray data by SAM-GS
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Irina Dinu, John Potter, Thomas Mueller, Qi Liu, Adeniyi Adewale, Gian Jhangri, Gunilla Einecke, Konrad Famulski, Philip Halloran, Yutaka Yasui
    posted to microarray gene_set_analysis expression algorithm by ealloza to the group BioinfoCIPF on 2007-07-06 10:44:14 as read along with 8 people renatomilani heliopais jfr shigepong ghattem GeeSharpMinor waghsk LuigiAugugliaro
  • MicroRNA expression alterations are linked to tumorigenesis and non-neoplastic processes in pancreatic ductal adenocarcinoma
    Oncogene, Vol. aop, No. current.
    by AE Szafranska, TS Davison, J John, T Cannon, B Sipos, A Maghnouj, E Labourier, SA Hahn, ,
    posted to microrna human expression cancer by ealloza to the group BioinfoCIPF on 2007-07-02 10:57:56 as **** along with 1 person tardigrade
  • Transcriptional profiling of aging in human muscle reveals a common aging signature
    PLoS Genetics, Vol. preprint, No. 2006. (1 June 2006), e115.eor.
    by Jacob M Zahn, Rebecca Sonu, Hannes Vogel, Emily Crane, Krystyna Mazan-Mamczarz, Ralph Rabkin, Ron W Davis, Kevin Becker, Art B Owen, Stuart K Kim
    posted to no-tag by ealloza to the group BioinfoCIPF on 2007-06-27 15:23:02 as ***
  • PathExpress: a web-based tool to identify relevant pathways in gene expression data
    Nucl. Acids Res. (22 June 2007), gkm261.
    by Nicolas Goffard, Georg Weiller
    posted to gene_list_analysis enzyme by ealloza to the group BioinfoCIPF on 2007-06-27 15:22:47 as read along with 3 people AlexanderPico jyuh jfr
  • Functional interpretation of microarray experiments.
    OMICS, Vol. 10, No. 3. (2006), pp. 398-410.
    by J Dopazo
    posted to review microarray gene_set_analysis gene_list_analysis by ealloza to the group BioinfoCIPF on 2007-06-25 17:38:29 as read along with 1 person jfr
  • Chromosomally unstable mouse tumours have genomic alterations similar to diverse human cancers
    Nature (21 May 2007)
    by Richard S Maser, Bhudipa Choudhury, Peter J Campbell, Bin Feng, Kwok-Kin Wong, Alexei Protopopov, Jennifer O’neil, Alejandro Gutierrez, Elena Ivanova, Ilana Perna, Eric Lin, Vidya Mani, Shan Jiang, Kate Mcnamara, Sara Zaghlul, Sarah Edkins, Claire Stevens, Cameron Brennan, Eric S Martin, Ruprecht Wiedemeyer, Omar Kabbarah, Cristina Nogueira, Gavin Histen, Jon Aster, Marc Mansour, Veronique Duke, Letizia Foroni, Adele K Fielding, Anthony H Goldstone, Jacob M Rowe, Yaoqi A Wang, Thomas A Look, Michael R Stratton, Lynda Chin, Andrew P Futreal, Ronald A Depinho
    posted to mouse instability human chromosome cancer animal_model aberration by ealloza to the group BioinfoCIPF on 2007-06-25 14:12:06 as read along with 3 people jackjackjjj shigepong cjeans
  • Unsupervised segmentation of continuous genomic data
    Bioinformatics, Vol. 23, No. 11. (1 June 2007), pp. 1424-1426.
    by Nathan Day, Andrew Hemmaplardh, Robert E Thurman, John A Stamatoyannopoulos, William S Noble
    posted to hmm by ealloza to the group BioinfoCIPF on 2007-06-25 13:50:35 as read
  • Extending the pathway analysis framework with a test for transcriptional variance implicates novel pathway modulation during myogenic differentiation.
    Bioinformatics (28 March 2007)
    by Daniel Kemp, N R R Nirmala, Joseph D D Szustakowski
    posted to microarray gene_set_analysis expression by ealloza to the group BioinfoCIPF on 2007-06-25 13:02:28 as read along with 2 people jfr hhlee
  • Using expression arrays for copy number detection: an example from E. Coli
    BMC Bioinformatics, Vol. 8 (14 June 2007), 203.
    by Dmitriy Skvortsov, Diana Abdueva, Michael E Stitzer, Steven E Finkel, Simon Tavare
    posted to hmm expression copy_number cgh aberration by ealloza to the group BioinfoCIPF on 2007-06-25 12:50:00 as read along with 2 people and 1 group bioguru2000 shigepong Bioinformatics
  • Statistical analysis of genomic protein family and domain controlled annotations for functional investigation of classified gene lists
    BMC Bioinformatics, Vol. 8, No. Suppl 1. (2007)
    by Marco Masseroli, Elisa Bellistri, Andrea Franceschini, Francesco Pinciroli
    posted to webserver protein gene_list_analysis algorithm by ealloza to the group BioinfoCIPF on 2007-06-25 12:48:21 as read along with 1 person jyuh
  • RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription
    Science (17 May 2007), 1138341.
    by Philipp Kapranov, Jill Cheng, Sujit Dike, David A Nix, Radharani Duttagupta, Aarron T Willingham, Peter F Stadler, Jana Hertel, Joerg Hackermueller, Ivo L Hofacker, Ian Bell, Evelyn Cheung, Jorg Drenkow, Erica Dumais, Sandeep Patel, Gregg Helt, Madhavan Ganesh, Srinka Ghosh, Antonio Piccolboni, Victor Sementchenko, Hari Tammana, Thomas R Gingeras
    posted to ncrna genome classification by marcius to the group BioinfoCIPF on 2007-06-15 11:16:53 as ** along with 11 people and 3 groups xingxu alexg dpollard xico mtagaya rdiaz djkt stajich mathijsv asddd elfar EisenLab WetBiology SGU-CIPF
  • THE EVOLUTIONARY DYNAMICS OF EUKARYOTIC GENE ORDER
    Nat Rev Genet, Vol. 5, No. 4. (April 2004), pp. 299-310.
    by Laurence D Hurst, Csaba Pal, Martin J Lercher
    posted to review gene_order functional_annotation by ealloza to the group BioinfoCIPF on 2007-06-13 11:56:04 as *****
  • RNA structure: experimental analysis.
    Curr Opin Microbiol (24 May 2007)
    by Brice Felden
    posted to structure rna review experimental by marcius to the group BioinfoCIPF on 2007-06-12 12:56:46 as ** along with 3 people and 1 group penka emidio_capriotti debatebob SGU-CIPF
  • RNA conformational classes.
    Nucleic Acids Res, Vol. 32, No. 5. (2004), pp. 1666-1677.
    by B Schneider, Z Morávek, HM Berman
    posted to rotamers rna classification biophysics by marcius to the group BioinfoCIPF on 2007-06-12 12:55:21 as ** along with 1 person and 1 group emidio_capriotti SGU-CIPF
  • Evolutionary rates vary among rRNA structural elements
    Nucl. Acids Res., Vol. 35, No. 10. (11 May 2007), pp. 3339-3354.
    by S Smit, J Widmann, R Knight
    posted to rna evolution by marcius to the group BioinfoCIPF on 2007-06-12 12:54:21 as ** along with 5 people and 2 groups eckart_bindewald balicea penka i000 cjeans SGU-CIPF YY1
  • Progenetix.net: an online repository for molecular cytogenetic aberration data.
    Bioinformatics, Vol. 17, No. 12. (December 2001), pp. 1228-1229.
    by M Baudis, ML Cleary
    posted to rearrangement karyotype human database cytogenetics cgh cancer aberration by ealloza to the group BioinfoCIPF on 2007-06-08 11:31:07 as read along with 1 person archroad
  • Online database and bioinformatics toolbox to support data mining in cancer cytogenetics.
    Biotechniques, Vol. 40, No. 3. (March 2006)
    by M Baudis
    posted to rearrangement karyotype human database cytogenetics cgh cancer aberration by ealloza to the group BioinfoCIPF on 2007-06-08 11:29:14 as read
  • A breakpoint map of recurrent chromosomal rearrangements in human neoplasia.
    Nat Genet, Vol. 15 Spec No (April 1997), pp. 417-474.
    by F Mitelman, F Mertens, B Johansson
    posted to human deletion database copy_number chromosome cancer aberration by ealloza to the group BioinfoCIPF on 2007-06-06 16:04:55 as read along with 1 person waghsk
  • Pathway and gene-set activation measurement from mRNA expression data: the tissue distribution of human pathways
    Genome Biology, Vol. 7 (17 October 2006), R93.
    by David M Levine, David R Haynor, John Castle, Sergey Stepaniants, Matteo Pellegrini, Mao Mao, Jason M Johnson
    posted to pathway mrna microarray gene_set_analysis gene_list_analysis expression comparison coherence coexpression by ealloza to the group BioinfoCIPF on 2007-06-04 11:07:04 as *** along with 3 people dragonrez jfr heliopais
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