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Group: TNT - with tag integration [32 articles]

Nye artikler sendt inn av medlemmer i TNT -gruppen with tag integration
  • Growth phase-dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome-wide DNA microarray
    Environmental Microbiology, Vol. 8, No. 1. (January 2006), pp. 165-177.
    by Luis Yuste, Ana B Hervas, Ines Canosa, Raquel Tobes, Jose I Jimenez, Juan Nogales, Manuel M Perez-Perez, Eduardo Santero, Eduardo Diaz, Juan-Luis Ramos, Victor de Lorenzo, Fernando Rojo
    posted to transcription regulation integration for-the-review cell-cycle biodegradation by gcarbajosa to the group TNT on 2008-07-21 18:15:33 as ***
  • The m-xylene biodegradation capacity of Pseudomonas putida mt-2 is submitted to adaptation to abiotic stresses: evidence from expression profiling of xyl genes
    Environmental Microbiology, Vol. 8, No. 4. (April 2006), pp. 591-602.
    by Francisco Velazquez, Victor de Lorenzo, Marc Valls
    posted to transcription regulation integration in-situ for-the-review biodegradation adaptation by gcarbajosa to the group TNT on 2008-07-21 18:12:10 as ***
  • The coordinate regulation of multiple terminal oxidases by the Pseudomonas putida ANR global regulator
    Environmental Microbiology, Vol. 10, No. 7. (July 2008), pp. 1690-1702.
    by Ugidos, Ana, Morales, Gracia, Rial, Eduardo, Williams, D Huw, Rojo, Fernando
    posted to transcription regulation integration for-the-review biodegradation anr by gcarbajosa to the group TNT on 2008-07-21 18:09:46 as ***
  • Transcriptional regulatory networks in bacteria: from input signals to output responses.
    Curr Opin Microbiol, Vol. 9, No. 5. (October 2006), pp. 511-519.
    by AS Seshasayee, P Bertone, GM Fraser, NM Luscombe
    posted to transcription signals regulation integration for-the-review by gcarbajosa to the group TNT on 2008-07-21 17:50:25 as *** along with 1 person and 1 group nickluscombe EBI-regulation
  • The Pseudomonas putida Crc global regulator is an RNA binding protein that inhibits translation of the AlkS transcriptional regulator
    Molecular Microbiology, Vol. 64, No. 3. (May 2007), pp. 665-675.
    by Moreno, Renata, Ruiz-Manzano, Ana, Yuste, Luis, Rojo, Fernando
    posted to translation transcription regulation integration for-the-review crc biodegradation alks by gcarbajosa to the group TNT on 2008-07-21 17:31:51 as ***
  • Mechanism controlling the extended lag period associated with vinyl chloride starvation in Nocardioides sp. strain JS614
    Archives of Microbiology, Vol. 187, No. 3. (March 2007), pp. 217-226.
    by Mattes, Timothy, Coleman, Nicholas, Chuang, Adina, Rogers, Andrea, Spain, Jim, Gossett, James
    posted to transcription regulation integration inducers for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-21 17:24:47 as ***
  • Styrene, an Unpalatable Substrate with Complex Regulatory Networks
    Pseudomonas (2007), pp. 59-87.
    by Livia Leoni, Giordano Rampioni, Elisabetta Zennaro
    posted to transcription tcst regulation model integration for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-21 17:21:57 as ***
  • Identification and expression of the cym, cmt, and tod catabolic genes from Pseudomonas putida KL47: expression of the regulatory todST genes as a factor for catabolic adaptation.
    Journal of microbiology (Seoul, Korea), Vol. 44, No. 2. (April 2006), pp. 192-199.
    by K Lee, EK Ryu, KS Choi, MC Cho, JJ Jeong, EN Choi, SO Lee, DY Yoon, I Hwang, CK Kim
    posted to transcription regulation integration for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 21:18:28 as **
  • The naphthalene catabolic (nag) genes of Polaromonas naphthalenivorans CJ2: evolutionary implications for two gene clusters and novel regulatory control.
    Appl Environ Microbiol, Vol. 72, No. 2. (February 2006), pp. 1086-1095.
    by CO Jeon, M Park, HS Ro, W Park, EL Madsen
    posted to transcription regulation integration for-the-review evolution biodegradation by gcarbajosa to the group TNT on 2008-07-16 21:14:06 as ***
  • Transcriptional Organization of Genes for Protocatechuate and Quinate Degradation from Acinetobacter sp. Strain ADP1
    Appl. Environ. Microbiol., Vol. 71, No. 2. (1 February 2005), pp. 1025-1034.
    by Sureyya Dal, Gaby Trautwein, Ulrike Gerischer
    posted to transcription regulation pcau integration for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 21:04:11 as ***
  • Substrate-Dependent Regulation of Anaerobic Degradation Pathways for Toluene and Ethylbenzene in a Denitrifying Bacterium, Strain EbN1
    J. Bacteriol., Vol. 187, No. 4. (15 February 2005), pp. 1493-1503.
    by Simon Kuhner, Lars Wohlbrand, Ingo Fritz, Wasco Wruck, Claus Hultschig, Peter Hufnagel, Michael Kube, Richard Reinhardt, Ralf Rabus
    posted to transcription toluene regulation integration for-the-review ethylbenzene biodegradation by gcarbajosa to the group TNT on 2008-07-16 21:00:05 as ***
  • Transcriptomic Assessment of Isozymes in the Biphenyl Pathway of Rhodococcus sp. Strain RHA1
    Appl. Environ. Microbiol., Vol. 72, No. 9. (1 September 2006), pp. 6183-6193.
    by Edmilson R Goncalves, Hirofumi Hara, Daisuke Miyazawa, Julian E Davies, Lindsay D Eltis, William W Mohn
    posted to transcriptomic transcription regulation integration for-the-review biodegradation assesment by gcarbajosa to the group TNT on 2008-07-16 20:04:09 as ***
  • Transcriptomic Analysis Reveals a Bifurcated Terephthalate Degradation Pathway in Rhodococcus sp. Strain RHA1
    J. Bacteriol., Vol. 189, No. 5. (1 March 2007), pp. 1641-1647.
    by Hirofumi Hara, Lindsay D Eltis, Julian E Davies, William W Mohn
    posted to transcriptomics transcription regulation integration for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 20:00:29 as **
  • Genetic and genomic insights into the role of benzoate-catabolic pathway redundancy in Burkholderia xenovorans LB400.
    Appl Environ Microbiol, Vol. 72, No. 1. (January 2006), pp. 585-595.
    by VJ Denef, JA Klappenbach, MA Patrauchan, C Florizone, JL Rodrigues, TV Tsoi, W Verstraete, LD Eltis, JM Tiedje
    posted to transcription regulation integration for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 19:57:33 as ***
  • Coregulation by Phenylacetyl-Coenzyme A-Responsive PaaX Integrates Control of the Upper and Lower Pathways for Catabolism of Styrene by Pseudomonas sp. Strain Y2
    J. Bacteriol., Vol. 188, No. 13. (1 July 2006), pp. 4812-4821.
    by Del, David Bartolome-Martin, Cristina Fernandez, Sergio Alonso, Jose L Garcia, Eduardo Diaz, Victoria Shingler, Julian Perera
    posted to transcription regulation integration for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 18:51:07 as ***
  • Cross-Regulation of Biphenyl- and Salicylate-Catabolic Genes by Two Regulatory Systems in Pseudomonas pseudoalcaligenes KF707
    J. Bacteriol., Vol. 188, No. 13. (1 July 2006), pp. 4690-4697.
    by Hidehiko Fujihara, Hideyuki Yoshida, Tetsuya Matsunaga, Masatoshi Goto, Kensuke Furukawa
    posted to transcription regulation integration for-the-review cross-regulation biodegradation by gcarbajosa to the group TNT on 2008-07-16 18:10:56 as ***
  • notes Oxygenases and dehalogenases: molecular approaches to efficient degradation of chlorinated environmental pollutants
    (October 2006)
    by K Furukawa
    posted to transcription regulation integration for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 18:07:10 as ***
  • Benzoate Catabolite Repression of the Phthalate Degradation Pathway in Rhodococcus sp. Strain DK17
    Appl. Environ. Microbiol., Vol. 73, No. 4. (15 February 2007), pp. 1370-1374.
    by Ki Y Choi, Gerben J Zylstra, Eungbin Kim
    posted to transcription regulation integration for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-14 19:36:41 as ***
  • The black cat/white cat principle of signal integration in bacterial promoters.
    The EMBO journal, Vol. 20, No. 1-2. (15 January 2001), pp. 1-11.
    by I Cases, V de Lorenzo
    posted to regulation integration for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-11 15:30:55 as ***
  • Promoters in the environment: transcriptional regulation in its natural context
    Nature Reviews Microbiology, Vol. 3, No. 2. (01 February 2005), pp. 105-118.
    by Ildefonso Cases, Victor de Lorenzo
    posted to transcription review regulation integration for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-11 15:24:31 as ****
  • The Target for the Pseudomonas putida Crc Global Regulator in the Benzoate Degradation Pathway Is the BenR Transcriptional Regulator
    J. Bacteriol., Vol. 190, No. 5. (1 March 2008), pp. 1539-1545.
    by Renata Moreno, Fernando Rojo
    posted to transcription regulation integration for-the-review crc biodegradation by gcarbajosa to the group TNT on 2008-07-10 16:31:45 as ***
  • Levels and Activity of the Pseudomonas putida Global Regulatory Protein Crc Vary According to Growth Conditions
    J. Bacteriol., Vol. 187, No. 11. (1 June 2005), pp. 3678-3686.
    by Ana Ruiz-Manzano, Luis Yuste, Fernando Rojo
    posted to transcription regulation integration for-the-review crc biodegradation by gcarbajosa to the group TNT on 2008-07-10 16:30:20 as ***
  • The Pseudomonas putida Crc global regulator controls the expression of genes from several chromosomal catabolic pathways for aromatic compounds.
    J Bacteriol, Vol. 186, No. 5. (March 2004), pp. 1337-1344.
    by G Morales, JF Linares, A Beloso, JP Albar, JL Martínez, F Rojo
    posted to transcription regulation integration for-the-review crc biodegradation by gcarbajosa to the group TNT on 2008-07-10 16:23:00 as ***
  • Integrated Response to Inducers by Communication between a Catabolic Pathway and Its Regulatory System
    J. Bacteriol., Vol. 189, No. 10. (15 May 2007), pp. 3768-3775.
    by Olga Martinez-Perez, Aroa Lopez-Sanchez, Francisca Reyes-Ramirez, Belen Floriano, Eduardo Santero
    posted to transcription regulation metabolism integration for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-10 16:20:05 as ****
  • Transcriptional Tradeoff between Metabolic and Stress-response Programs in Pseudomonas putida KT2440 Cells Exposed to Toluene
    J. Biol. Chem., Vol. 281, No. 17. (28 April 2006), pp. 11981-11991.
    by Patricia Dominguez-Cuevas, Jose-Eduardo Gonzalez-Pastor, Silvia Marques, Juan-Luis Ramos, Victor de Lorenzo
    posted to transcription stress regulation integration for-the-review by gcarbajosa to the group TNT on 2008-07-10 16:17:32 as ***
  • Inferring the genetic network of m-xylene metabolism through expression profiling of the xyl genes of Pseudomonas putida mt-2
    Molecular Microbiology, Vol. 57, No. 6. (September 2005), pp. 1557-1569.
    by Francisco Velazquez, Victor Parro, Victor de Lorenzo
    posted to transcription tol stress regulation post-transcriptional network m-xylene integration for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-10 16:13:36 as ***
  • Regulation of sigma factor competition by the alarmone ppGpp
    Genes Dev., Vol. 16, No. 10. (15 May 2002), pp. 1260-1270.
    by Miki Jishage, Kristian Kvint, Victoria Shingler, Thomas Nystrom
    posted to transcription sigma regulation integration for-the-review by gcarbajosa to the group TNT on 2008-07-10 15:45:13 as ***
  • The Role of the Alarmone (p)ppGpp in sigma N Competition for Core RNA Polymerase
    J. Biol. Chem., Vol. 278, No. 3. (10 January 2003), pp. 1494-1503.
    by Andrew D Laurie, Lisandro M Bernardo, Chun C Sze, Eleonore Skarfstad, Agnieszka Szalewska-Palasz, Thomas Nystrom, Victoria Shingler
    posted to transcription sigma regulation ppgpp po integration for-the-review dmpr biodegradation by gcarbajosa to the group TNT on 2008-07-10 15:39:03 as ***
  • The guanosine tetraphosphate (ppGpp) alarmone, DksA and promoter affinity for RNA polymerase in regulation of 54-dependent transcription
    Molecular Microbiology, Vol. 60, No. 3. (May 2006), pp. 749-764.
    by Lisandro M Bernardo, Linda U Johansson, Dafne Solera, Eleonore Skarfstad, Victoria Shingler
    posted to transcription sigma54 regulation ppgpp po integration for-the-review dmpr biodegradation by gcarbajosa to the group TNT on 2008-07-10 15:33:39 as ***
  • Integrated regulation in response to aromatic compounds: from signal sensing to attractive behaviour
    Environmental Microbiology, Vol. 5, No. 12. (2003), pp. 1226-1241.
    by Victoria Shingler
    posted to transcription sigma regulation ppgpp integration for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-10 14:49:53 as ***
  • Properties of RNA Polymerase Bypass Mutants: IMPLICATIONS FOR THE ROLE OF ppGpp AND ITS CO-FACTOR DksA IN CONTROLLING TRANSCRIPTION DEPENDENT ON sigma54
    J. Biol. Chem., Vol. 282, No. 25. (22 June 2007), pp. 18046-18056.
    by Agnieszka Szalewska-Palasz, Linda U Johansson, Lisandro M Bernardo, Eleonore Skarfstad, Ewa Stec, Kristoffer Brannstrom, Victoria Shingler
    posted to transcription stress sigma54 sigma regulation ppgpp integration for-the-review by gcarbajosa to the group TNT on 2008-07-10 14:42:57 as ***
  • The Upstream-activating Sequences of the sigma54 Promoter Pu of Pseudomonas putida Filter Transcription Readthrough from Upstream Genes
    J. Biol. Chem., Vol. 281, No. 17. (28 April 2006), pp. 11940-11948.
    by Francisco Velazquez, Silvia Fernandez, Victor de Lorenzo
    posted to transcriptional-noise transcription tol sigma54 regulation readtrough integration for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-10 14:19:18 as ***
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