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Group: microbiology_nijmegen - with tag biochemistry [44 articles]

Nye artikler sendt inn av medlemmer i microbiology_nijmegen -gruppen with tag biochemistry
  • Structure of an F430 variant from archaea associated with anaerobic oxidation of methane.
    Journal of the American Chemical Society, Vol. 130, No. 32. (13 August 2008), pp. 10758-10767.
    by S Mayr, C Latkoczy, M Krüger, D Günther, S Shima, RK Thauer, F Widdel, B Jaun
    posted to biochemistry anme by faluesken to the group microbiology_nijmegen on 2008-08-14 14:10:58 as **
  • Assimilation of methane and inorganic carbon by microbial communities mediating the anaerobic oxidation of methane
    Environmental Microbiology, Vol. 10, No. 9. (September 2008), pp. 2287-2298.
    posted to physiology biochemistry anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:55:37 as ** along with 1 person faluesken
  • Inhibition Experiments on Anaerobic Methane Oxidation.
    Applied and environmental microbiology, Vol. 50, No. 4. (October 1985), pp. 940-945.
    by Marc J J Alperin, William S S Reeburgh
    posted to biochemistry anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:52:54 as **
  • Adding handles to unhandy substrates: anaerobic hydrocarbon activation mechanisms.
    Current opinion in chemical biology, Vol. 11, No. 2. (April 2007), pp. 188-194.
    by J Heider
    posted to biochemistry anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:37:05 as **
  • Characterization of the thioether product formed from the thiolytic cleavage of the alkyl-nickel bond in methyl-coenzyme M reductase.
    Biochemistry, Vol. 47, No. 8. (26 February 2008), pp. 2661-2667.
    by RC Kunz, M Dey, SW Ragsdale
    posted to methanogen biochemistry anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:30:17 as **
  • Two c-type cytochromes, NirM and NirC, encoded in the nir gene cluster of Pseudomonas aeruginosa act as electron donors for nitrite reductase.
    Biochemical and biophysical research communications, Vol. 288, No. 5. (16 November 2001), pp. 1223-1230.
    posted to nirs denitrification biochemistry by kinestetika to the group microbiology_nijmegen on 2008-08-06 15:29:10 as **
  • The Crystal Structure of [Fe]-Hydrogenase Reveals the Geometry of the Active Site
    Science, Vol. 321, No. 5888. (25 July 2008), pp. 572-575.
    by Seigo Shima, Oliver Pilak, Sonja Vogt, Michael Schick, Marco S Stagni, Wolfram Meyer-Klaucke, Eberhard Warkentin, Rudolf K Thauer, Ulrich Ermler
  • Two isozymes of particulate methane monooxygenase with different methane oxidation kinetics are found in Methylocystis sp. strain SC2 — PNAS
    Proceedings of the National Academy of Sciences of the USA, Vol. 105, No. 28. (July 2008), pp. 10203-10208.
    by Mohamed Baani, Werner Liesack
    posted to pmmo monooxygenase methylotrophy methanotrophy methane biochemistry by Katje to the group microbiology_nijmegen on 2008-07-17 12:11:18 as **
  • Formate as the Main Branch Point for Methylotrophic Metabolism in Methylobacterium extorquens AM1
    J. Bacteriol., Vol. 190, No. 14. (15 July 2008), pp. 5057-5062.
    by Gregory J Crowther, George Kosaly, Mary E Lidstrom
    posted to methylotroph biochemistry by kinestetika to the group microbiology_nijmegen on 2008-07-13 20:16:24 as **
  • notes Reactive Oxygen Species Special Feature: Oxygen-regulated isoforms of cytochrome c oxidase have differential effects on its nitric oxide production and on hypoxic signaling
    Proceedings of the National Academy of Sciences, Vol. 105, No. 24. (17 June 2008), pp. 8203-8208.
    by Pablo R Castello, Dong K Woo, Kerri Ball, Jay Wojcik, Laura Liu, Robert O Poyton
  • Characterization of a Novel Methanol Dehydrogenase in Representatives of Burkholderiales: Implications for Environmental Detection of Methylotrophy and Evidence for Convergent Evolution
    J. Bacteriol., Vol. 190, No. 11. (1 June 2008), pp. 3817-3823.
    by Marina G Kalyuzhnaya, Krassimira R Hristova, Mary E Lidstrom, Ludmila Chistoserdova
    posted to methylotroph biochemistry by kinestetika to the group microbiology_nijmegen on 2008-05-16 08:31:45 as ** along with 1 person Huub_odc
  • Life without RNase P
    Nature, Vol. 453, No. 7191., pp. 120-123.
    by Lennart Randau, Imke Schröder, Dieter Söll
  • Structural characterization of a binuclear center of a Cu-containing NO reductase homologue from Roseobacter denitrificans: EPR and resonance Raman studies.
    Biochimica et biophysica acta, Vol. 1656, No. 1. (12 May 2004), pp. 37-45.
    by Y Matsuda, T Uchida, H Hori, T Kitagawa, H Arata
    posted to biochemistry epr respiratory_complexes by kinestetika to the group microbiology_nijmegen on 2008-04-15 08:36:10 as **
  • Electrochemical, FT-IR and UV/VIS spectroscopic properties of the caa3 oxidase from T. thermophilus.
    European journal of biochemistry / FEBS, Vol. 269, No. 19. (October 2002), pp. 4830-4838.
    posted to biochemistry respiratory_complexes by kinestetika to the group microbiology_nijmegen on 2008-04-15 08:32:06 as **
  • Gene cluster of Rhodothermus marinus high-potential iron-sulfur Protein: oxygen oxidoreductase, a caa(3)-type oxidase belonging to the superfamily of heme-copper oxidases.
    Journal of bacteriology, Vol. 183, No. 2. (January 2001), pp. 687-699.
    by M Santana, MM Pereira, NP Elias, CM Soares, M Teixeira
    posted to biochemistry respiratory_complexes by kinestetika to the group microbiology_nijmegen on 2008-04-15 08:30:05 as **
  • Cytochrome aa3 in facultatively aerobic and hyperthermophilic archaeon Pyrobaculum oguniense.
    Canadian journal of microbiology, Vol. 51, No. 8. (August 2005), pp. 621-627.
    by T Nunoura, Y Sako, T Wakagi, A Uchida
    posted to biochemistry respiratory_complexes by kinestetika to the group microbiology_nijmegen on 2008-04-15 08:28:36 as **
  • Cytochrome aa3 in Haloferax volcanii
    J. Bacteriol., Vol. 184, No. 3. (1 February 2002), pp. 840-845.
    by Mikiei Tanaka, Naohide Ogawa, Kunio Ihara, Yasuo Sugiyama, Yasuo Mukohata
    posted to biochemistry cytc respiratory_complexes by kinestetika to the group microbiology_nijmegen on 2008-04-15 08:22:52 as **
  • Nitric oxide reductases of prokaryotes with emphasis on the respiratory, heme-copper oxidase type
    Journal of Inorganic Biochemistry, Vol. 99, No. 1. (January 2005), pp. 194-215.
    by Walter G Zumft
    posted to biochemistry denitrification review by kinestetika to the group microbiology_nijmegen on 2008-04-09 10:39:08 as **
  • Structural elements involved in electron-coupled proton transfer in cytochrome c oxidase
    FEBS Letters, Vol. 567, No. 1. (1 June 2004), pp. 103-110.
    by Andreas Namslauer, Peter Brzezinski
    posted to biochemistry respiratory_complexes by kinestetika to the group microbiology_nijmegen on 2008-04-09 10:12:40 as **
  • Oxidase, superoxide dismutase, and hydrogen peroxide reductase activities of methanobactin from types I and II methanotrophs.
    J Inorg Biochem (20 February 2008)
    by Dong W W Choi, Jeremy D D Semrau, William E E Antholine, Scott C C Hartsel, Ryan C C Anderson, Jeffrey N N Carey, Ashley M M Dreis, Erik M M Kenseth, Joel M M Renstrom, Lori L L Scardino, Garrett S S Van Gorden, Anna A A Volkert, Aaron D D Wingad, Paul J J Yanzer, Marcus T T McEllistrem, Arlene M M de la Mora, Alan A A Dispirito
    posted to biochemistry methylotroph by kinestetika to the group microbiology_nijmegen on 2008-04-01 14:00:34 as **
  • Microbial carbon dioxide fixation and sequestration: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology
    Environmental Microbiology, Vol. 10, No. 2. (February 2008), pp. 542-543.
    posted to biochemistry carbon_fixation evolution genome by Katje to the group microbiology_nijmegen on 2008-01-16 19:22:35 as **
  • The biochemistry of methane oxidation.
    Annu Rev Biochem, Vol. 76 (2007), pp. 223-241.
    posted to biochemistry methanotrophy methylotrophy physiology by Katje to the group microbiology_nijmegen on 2007-10-28 21:47:17 as ***
  • Multi-heme cytochromes--new structures, new chemistry.
    Dalton Trans, No. 21. (7 November 2005), pp. 3381-3389.
    by CG Mowat, SK Chapman
    posted to biochemistry cytc genome hao nirs by kinestetika to the group microbiology_nijmegen on 2007-10-07 22:49:58 as **
  • The crystal structure of cytochrome P460 of Nitrosomonas europaea reveals a novel cytochrome fold and heme-protein cross-link.
    Biochemistry, Vol. 46, No. 28. (17 July 2007), pp. 8340-8349.
    by AR Pearson, BO Elmore, C Yang, JD Ferrara, AB Hooper, CM Wilmot
  • Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12.
    Proteomics, Vol. 4, No. 6. (June 2004), pp. 1597-1613.
    by P Gonnet, KE Rudd, F Lisacek
    posted to biochemistry cell_envelope lipoprotein by kinestetika to the group microbiology_nijmegen on 2007-10-07 22:27:53 as **
  • Sorting of lipoproteins to the outer membrane in E. coli.
    Biochim Biophys Acta, Vol. 1694, No. 1-3. (11 November 2004)
    posted to biochemistry cell_envelope lipoprotein by kinestetika to the group microbiology_nijmegen on 2007-10-07 22:26:21 as **
  • Functional, biochemical and genetic diversity of prokaryotic nitrate reductases.
    Cell Mol Life Sci, Vol. 58, No. 2. (February 2001), pp. 165-178.
    by DJ Richardson, BC Berks, DA Russell, S Spiro, CJ Taylor
    posted to biochemistry nitrate_reductase review by kinestetika to the group microbiology_nijmegen on 2007-10-07 22:21:24 as **
  • Biochemistry, regulation and genomics of haem biosynthesis in prokaryotes.
    Adv Microb Physiol, Vol. 46 (2002), pp. 257-318.
    posted to biochemistry cytc review by kinestetika to the group microbiology_nijmegen on 2007-10-07 22:20:06 as **
  • Genomics of the ccoNOQP-encoded cbb3 oxidase complex in bacteria.
    Arch Microbiol, Vol. 181, No. 2. (February 2004), pp. 89-96.
    by C Cosseau, J Batut
    posted to biochemistry cbb3 genome review by kinestetika to the group microbiology_nijmegen on 2007-10-07 22:19:09 as **
  • The bacterial cytochrome cbb3 oxidases.
    Biochim Biophys Acta, Vol. 1655, No. 1-3. (12 April 2004), pp. 388-399.
    by RS Pitcher, NJ Watmough
    posted to biochemistry cbb3 genome review by kinestetika to the group microbiology_nijmegen on 2007-10-07 22:18:17 as **
  • The alternative complex III from Rhodothermus marinus - A prototype of a new family of quinol:electron acceptor oxidoreductases.
    FEBS Lett (14 September 2007)
    by Manuela M M Pereira, Patricia N N Refojo, Gudmundur O O Hreggvidsson, Sigridur Hjorleifsdottir, Miguel Teixeira
    posted to bc1 biochemistry cytc by kinestetika to the group microbiology_nijmegen on 2007-10-07 22:15:17 as ** along with 1 person evodeva
  • Structure, mechanism and physiological roles of bacterial cytochrome c peroxidases.
    Adv Microb Physiol, Vol. 52 (2007), pp. 73-106.
    by JM Atack, DJ Kelly
    posted to biochemistry cytc by kinestetika to the group microbiology_nijmegen on 2007-10-07 21:55:51 as **
  • Methyl sulfides as intermediates in the anaerobic oxidation of methane.
    Environ Microbiol (30 September 2007)
    by James J J Moran, Emily J J Beal, Jennifer M M Vrentas, Victoria J J Orphan, Katherine H H Freeman, Christopher H H House
    posted to anme biochemistry by kinestetika to the group microbiology_nijmegen on 2007-10-07 13:20:23 as ***
  • Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling
    Environmental Microbiology, Vol. 7, No. 12. (December 2005), pp. 1985-1995.
    by Alexander H Treusch, Sven Leininger, Arnulf Kletzin, Stephan C Schuster, Hans-Peter Klenk, Christa Schleper
  • Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota.
    PLoS Biol, Vol. 4, No. 4. (April 2006)
    by SJ Hallam, TJ Mincer, C Schleper, CM Preston, K Roberts, PM Richardson, EF DeLong
  • The Escherichia coli cytochrome c maturation (Ccm) apparatus can mature cytochromes with an extra cysteine within or adjacent to the CXXCH motif.
    Biochem Soc Trans, Vol. 34, No. Pt 1. (February 2006), pp. 91-93.
    by JW Allen, SJ Ferguson
    posted to cytc biochemistry by kinestetika to the group microbiology_nijmegen on 2007-08-14 21:11:19 as ** along with 1 group anammox
  • What is the substrate specificity of the System I cytochrome c biogenesis apparatus?
    Biochem Soc Trans, Vol. 34, No. Pt 1. (February 2006), pp. 150-151.
    by JW Allen, SJ Ferguson
    posted to cytc biochemistry by kinestetika to the group microbiology_nijmegen on 2007-08-14 21:09:39 as ** along with 1 group anammox
  • An octaheme c-type cytochrome from Shewanella oneidensis can reduce nitrite and hydroxylamine.
    FEBS Lett, Vol. 581, No. 20. (7 August 2007), pp. 3805-3808.
    by SJ Atkinson, CG Mowat, GA Reid, SK Chapman
    posted to hao dnra biochemistry by kinestetika to the group microbiology_nijmegen on 2007-08-14 21:02:14 as ** along with 1 group anammox
  • Involvement of a novel hydroxylamine oxidoreductase in anaerobic ammonium oxidation.
    Biochemistry, Vol. 39, No. 18. (9 May 2000), pp. 5405-5412.
    by J Schalk, S de Vries, JG Kuenen, MS Jetten
    posted to hao biochemistry anammox by kinestetika to the group microbiology_nijmegen on 2007-08-13 10:54:08 as ** along with 1 group anammox
  • A new soluble 10kDa monoheme cytochrome c-552 from the anammox bacterium Candidatus "Kuenenia stuttgartiensis".
    FEMS Microbiol Lett, Vol. 252, No. 2. (15 November 2005), pp. 273-278.
    by IE Cirpus, M de Been, HJ den Camp, M Strous, D Le Paslier, GJ Kuenen, MS Jetten
    posted to cytc biochemistry anammox by kinestetika to the group microbiology_nijmegen on 2007-08-13 10:02:17 as ** along with 1 group anammox
  • Challenging protein purification from anammox bacteria.
    Int J Biol Macromol, Vol. 39, No. 1-3. (15 August 2006), pp. 88-94.
    by IE Cirpus, W Geerts, JH Hermans, HJ Op den Camp, M Strous, JG Kuenen, MS Jetten
    posted to biochemistry anammox by kinestetika to the group microbiology_nijmegen on 2007-08-13 09:58:10 as ** along with 1 group anammox
  • Deciphering the evolution and metabolism of an anammox bacterium from a community genome
    Nature, Vol. 440, No. 7085., pp. 790-794.
    by Marc Strous, Eric Pelletier, Sophie Mangenot, Thomas Rattei, Angelika Lehner, Michael W Taylor, Matthias Horn, Holger Daims, Delphine Bartol-Mavel, Patrick Wincker, Valã©rie Barbe, Nuria Fonknechten, David Vallenet, Bã©atrice Segurens, Chantal Schenowitz-Truong, Claudine Mã©digue, Astrid Collingro, Berend Snel, Bas E Dutilh, Huub, Chris van der Drift, Irina Cirpus, Katinka T van de Pas-Schoonen, Harry R Harhangi, Laura van Niftrik, Markus Schmid, Jan Keltjens, Jack van de Vossenberg, Boran Kartal, Harald Meier, Dmitrij Frishman, Martijn A Huynen, Hans-Werner Mewes, Jean Weissenbach, Mike SM Jetten, Michael Wagner, Denis Le Paslier
  • Expression and characterisation of a major c-type cytochrome encoded by gene kustc0563 from Kuenenia stuttgartiensis as a recombinant protein in Escherichia coli.
    Protein Expr Purif, Vol. 51, No. 1. (January 2007), pp. 28-33.
    by WM Huston, HR Harhangi, AP Leech, CS Butler, MS Jetten, HJ Op den Camp, JW Moir
    posted to cytc biochemistry anammox by kinestetika to the group microbiology_nijmegen on 2007-08-12 21:16:38 as ** along with 1 group anammox
  • Isolation of a multiheme protein with features of a hydrazine-oxidizing enzyme from an anaerobic ammonium-oxidizing enrichment culture.
    Appl Environ Microbiol, Vol. 73, No. 4. (February 2007), pp. 1065-1072.
    posted to hao biochemistry anammox by kinestetika to the group microbiology_nijmegen on 2007-08-12 21:10:17 as ** along with 1 group anammox
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