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Group: Nielsen group - library [16 articles]

Nye artikler sendt inn av medlemmer i Nielsen group -gruppen
  • Automated Molecular Simulation Based Binding Affinity Calculator for Ligand-Bound HIV-1 Proteases.
    Journal of chemical information and modeling (19 August 2008)
    by S K Sadiq, David Wright, Simon J Watson, Stefan J Zasada, Ileana Stoica, Peter V Coveney
    posted to hiv by skoddet to the group Nielsen group on 2008-08-26 21:50:32 as ** along with 1 person mijogiffin
  • An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes.
    J Mol Biol, Vol. 326, No. 4. (28 February 2003), pp. 1239-1259.
    by T Kortemme, AV Morozov, D Baker
    posted to protein structure by skoddet to the group Nielsen group on 2008-07-10 16:17:17 as ** along with 2 people lna dgront
  • A simple physical model for binding energy hot spots in protein-protein complexes.
    Proc Natl Acad Sci U S A, Vol. 99, No. 22. (29 October 2002), pp. 14116-14121.
    by T Kortemme, D Baker
    posted to structure-prediction by skoddet to the group Nielsen group on 2008-06-20 15:35:40 as ** along with 5 people lna jwm bicko cjeans hmk
  • SNPeffect v2.0: a new step in investigating the molecular phenotypic effects of human non synonymous SNPs.
    Bioinformatics (29 June 2006)
    by Joke Reumers, Sebastian Maurer-Stroh, Joost Schymkowitz, Frederic Rousseau
    posted to structure-prediction by skoddet to the group Nielsen group on 2008-06-20 15:33:38 as ** along with 4 people and 2 groups chad_davis caporaso massivemayhem cat_worth structural_bioinformatics biomedical-nlp
  • Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases.
    Nucleic Acids Res (17 December 2007)
    by Joke Reumers, Lucia Conde, Ignacio Medina, Sebastian Maurer-Stroh, Joost Van V Durme, Joaquin Dopazo, Frederic Rousseau, Joost Schymkowitz
    posted to no-tag by skoddet to the group Nielsen group on 2008-06-20 15:31:29 as ** along with 1 person jyuh
  • Thermodynamic linkage between the binding of protons and inhibitors to HIV-1 protease
    Protein Sci, Vol. 8, No. 1. (1 January 1999), pp. 180-195.
    by J Trylska, J Antosiewicz, M Geller, Cn Hodge, Rm Klabe, Ms Head, Mk Gilson
    posted to hiv pka by skoddet to the group Nielsen group on 2008-06-20 15:29:53 as ** along with 1 person boris_aguilar
  • Binding pathways of ligands to HIV-1 protease: coarse-grained and atomistic simulations.
    Chem Biol Drug Des, Vol. 69, No. 1. (January 2007), pp. 5-13.
    by CE Chang, J Trylska, V Tozzini, JA McCammon
    posted to hiv by skoddet to the group Nielsen group on 2008-06-20 15:28:58 as ** along with 1 person choonpeng
  • Evolutionary analysis of HIV-1 protease inhibitors: Methods for design of inhibitors that evade resistance.
    Proteins, Vol. 48, No. 1. (1 July 2002), pp. 63-74.
    by D Stoffler, MF Sanner, GM Morris, AJ Olson, DS Goodsell
    posted to hiv by skoddet to the group Nielsen group on 2008-06-11 16:52:01 as **
  • Molecular Analysis of the HIV-1 Resistance Development: Enzymatic Activities, Crystal Structures, and Thermodynamics of Nelfinavir-resistant HIV Protease Mutants
    Journal of Molecular Biology, Vol. 374, No. 4. (7 December 2007), pp. 1005-1016.
    by Milan Kozísek, Jenelle Bray, Pavlína Rezácová, Klára Sasková, Jirí Brynda, Jana Pokorná, Fabrizio Mammano, Lubomír Rulísek, Jan Konvalinka
    posted to hiv by skoddet to the group Nielsen group on 2008-06-11 16:50:39 as ** along with 1 person joseph_x_zhou
  • Mapping Local Protein Electrostatics by EPR of pH-Sensitive Thiol-Specific Nitroxide
    Biochemistry, Vol. 47, No. 20. (20 May 2008), pp. 5626-5637.
    by Maxim A Voinov, Andres Ruuge, Vladimir A Reznikov, Igor A Grigor’ev, Alex I Smirnov
    posted to nmr pka_values by skoddet to the group Nielsen group on 2008-05-13 11:04:18 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Microsecond Molecular Dynamics Simulation Shows Effect of Slow Loop Dynamics on Backbone Amide Order Parameters of Proteins
    J. Phys. Chem. B (1 March 2008)
    by P Maragakis, K Lindorff-Larsen, MP Eastwood, RO Dror, JL Klepeis, IT Arkin, MO Jensen, H Xu, N Trbovic, RA Friesner, AG Palmer, DE Shaw
    posted to md by skoddet to the group Nielsen group on 2008-05-08 16:02:47 as ** along with 1 person LamBras
  • Correspondences between low-energy modes in enzymes: Dynamics-based alignment of enzymatic functional families
    Protein Sci, Vol. 17, No. 5. (1 May 2008), pp. 918-929.
    by Andrea Zen, Vincenzo Carnevale, Arthur M Lesk, Cristian Micheletti
    posted to nma by skoddet to the group Nielsen group on 2008-04-26 09:04:42 as ** along with 2 people edvin tny
  • A buried lysine that titrates with a normal pKa : Role of conformational flexibility at the protein-water interface as a determinant of pKa values
    Protein Sci, Vol. 17, No. 5. (1 May 2008), pp. 833-845.
    by Michael J Harms, Jamie L Schlessman, Michael S Chimenti, Gloria R Sue, Ana Damjanovic, Garcia-Moreno
    posted to no-tag by skoddet to the group Nielsen group on 2008-04-25 21:23:03 as *** along with 2 people and 1 group sobolevnrm RamuAnandakrishnan baker-group
  • From the Cover: Consistent blind protein structure generation from NMR chemical shift data
    Proceedings of the National Academy of Sciences, Vol. 105, No. 12. (25 March 2008), pp. 4685-4690.
    by Yang Shen, Oliver Lange, Frank Delaglio, Paolo Rossi, James M Aramini, Gaohua Liu, Alexander Eletsky, Yibing Wu, Kiran K Singarapu, Alexander Lemak, Alexandr Ignatchenko, Cheryl H Arrowsmith, Thomas Szyperski, Gaetano T Montelione, David Baker, Ad Bax
    posted to nmr prediction structure by skoddet to the group Nielsen group on 2008-04-11 10:54:23 as *** along with 5 people dgront zwang biehl sunhwan apaydin
  • A finite element framework for computation of protein normal modes and mechanical response
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Mark Bathe
    posted to nma by skoddet to the group Nielsen group on 2008-04-11 10:44:14 as ** along with 2 people choonpeng RamuAnandakrishnan
  • A knowledge-based forcefield for protein-protein interface design.
    Proteins, Vol. 70, No. 4. (March 2008), pp. 1540-1550.
    by LA Clark, HW van Vlijmen
    posted to design protein by skoddet to the group Nielsen group on 2008-04-11 10:44:01 as ** along with 1 person chad_davis
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