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Group: Bioinformatics - with tag genome [117 articles]

Nye artikler sendt inn av medlemmer i Bioinformatics -gruppen with tag genome
  • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816.
    posted to project human genome encode by pengchy to the group Bioinformatics on 2008-10-02 02:50:26 as ** along with 25 people and 2 groups timflutre raistrick jyuh cmmorel dpollard ilh djkt plofje ramensky joepickrell massivemayhem fishtank Garamonfok jmuhlich bioyang cabbagezs xingxu antonkratz mimulus_99 julianjonker gjuggler drbal maralena ep161302 jasonflannick EisenLab SorgerLab
  • A new pheromone trail-based genetic algorithm for comparative genome assembly
    Nucl. Acids Res. (29 April 2008), gkn168.
    by Fangqing Zhao, Fanggeng Zhao, Tao Li, Donald A Bryant
    posted to assembly bioinformatics genome genomics by fqzhao to the group Bioinformatics on 2008-05-07 21:28:04 as read
  • Organization and Evolution of Primate Centromeric DNA from Whole-Genome Shotgun Sequence Data
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e181.
    by Can Alkan, Mario Ventura, Nicoletta Archidiacono, Mariano Rocchi, Cenk S Sahinalp, Evan E Eichler
    posted to 2007 bioinformatics evolution genome genomics by hpaces to the group Bioinformatics on 2007-11-03 18:38:16 as ** along with 1 person zwang
  • Genome sequence, comparative analysis and haplotype structure of the domestic dog
    Nature, Vol. 438, No. 7069., pp. 803-819.
    by Kerstin Lindblad-Toh, Claire M Wade, Tarjei S Mikkelsen, Elinor K Karlsson, David B Jaffe, Michael Kamal, Michele Clamp, Jean L Chang, Edward J Kulbokas, Michael C Zody, Evan Mauceli, Xiaohui Xie, Matthew Breen, Robert K Wayne, Elaine A Ostrander, Chris P Ponting, Francis Galibert, Douglas R Smith, Pieter J Dejong, Ewen Kirkness, Pablo Alvarez, Tara Biagi, William Brockman, Jonathan Butler, Chee-Wye Chin, April Cook, James Cuff, Mark J Daly, David Decaprio, Sante Gnerre, Manfred Grabherr, Manolis Kellis, Michael Kleber, Carolyne Bardeleben, Leo Goodstadt, Andreas Heger, Christophe Hitte, Lisa Kim, Klaus-Peter Koepfli, Heidi G Parker, John P Pollinger, Stephen MJ Searle, Nathan B Sutter, Rachael Thomas, Caleb Webber, Eric S Lander
    posted to genome by neveaire to the group Bioinformatics on 2007-07-11 17:46:20 as ** along with 5 people and 6 groups aprasad indigoviolet dchughes mini1000srule djkt Biostatistics Computational-Genomics EisenLab Neuroscience G4ID Genetics-of-Gambling
  • Why Are There Still Over 1000 Uncharacterized Yeast Genes?
    Genetics, Vol. 176, No. 1. (1 May 2007), pp. 7-14.
    by Lourdes Pena-Castillo, Timothy R Hughes
    posted to yeast genome by neveaire to the group Bioinformatics on 2007-06-08 09:30:05 as ** along with 3 people and 6 groups dchughes cjeans biomcgary Biostatistics Computational-Genomics Neuroscience G4ID Genetics-of-Gambling Marcotte_Lab
  • Gene targeting in plants: fingers on the move.
    Trends Plant Sci, Vol. 11, No. 4. (2006), pp. 159-61.
    by S Kumar, GC Allen, WF Thompson
    posted to genome-chromatin zinc us targetingmethods support research repair recombination plantsgenetics plant non-us non-phs govt genome genetic gene fingersphysiology endodeoxyribonucleaseschemistrymetabolism dna disassembly chromatin assembly and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:43 as **** along with 1 group ProkaryoteInterestGroup
  • Transition nuclear proteins are required for normal chromatin condensation and functional sperm development.
    Genesis, Vol. 38, No. 4. (2004), pp. 200-13.
    by M Zhao, CR Shirley, S Hayashi, L Marcon, B Mohapatra, R Suganuma, RR Behringer, G Boissonneault, R Yanagimachi, ML Meistrich
    posted to genome fluorescence disassembly developmentmetabolismpathology chromosomal chromatingeneticsmetabolism chromatin assembly animals and agingphysiology genome-chromatin us support spermatozoacytologygrowth spermatogenesis research proteins protaminesmetabolism phs non-us non-histonedeficiencygeneticsmetabolism mutationgenetics microscopy mice malegeneticspathology male knockout infertility histonesmetabolism govt by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:29 as **** along with 1 group ProkaryoteInterestGroup
  • Chromatin remodeling and the maintenance of genome integrity.
    Biochim Biophys Acta, Vol. 1677, No. 1-3. (2004), pp. 158-64.
    by S Allard, JY Masson, J Cote
    posted to genome-chromatin variation u1 triphosphatemetabolism support substances small rna-binding ribonucleoprotein research repairgenetics proteins nucleargeneticsmetabolism non-us macromolecular humans histonesgeneticsmetabolism histone govt genome genetics drosophila dna disassembly chromatin assembly animals and adenosine acetyltransferasesgeneticsmetabolism acetyltransferases by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:12 as **** along with 1 group ProkaryoteInterestGroup
  • Gene identification in novel eukaryotic genomes by self-training algorithm
    Nucleic Acids Res, Vol. 33, No. 20. (2005), pp. 6494-6506.
    by A Lomsadze, Ter V Hovhannisyan, YO Chernoff, M Borodovsky
    posted to 0900 20051220 algorithms animals chains comparative exons extramural genes genome genomicsmethods markov nih of phylogeny reproducibility research results study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:02 as **
  • A non-EST-based method for exon-skipping prediction
    Genome Res, Vol. 14, No. 8. (Aug 2004), pp. 1617-1623.
    by R Sorek, R Shemesh, Y Cohen, O Basechess, G Ast, R Shamir
    posted to 0500 20040924 acid alternative animals biologymethods comparative computational databases exons expressed genetic genome human humans introns messengergenetics mice models nucleic rna sequence splicing study tags by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:02 as **
  • Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays
    Science, Vol. 302, No. 5653. (Dec 2003), pp. 2141-2144.
    by JM Johnson, J Castle, Garrett P Engele, Z Kan, PM Loerch, CD Armour, R Santos, EE Schadt, R Stoughton, DD Shoemaker
    posted to 0500 20040107 alternative amyloid analysis array beta-protein cell chain coa complementary curve data distribution dna exons expressed genome human humans hydrolases hydroxymethylglutaryl isoformsanalysis line molecular monoester oligonucleotide phosphoric polymerase precursoranalysisgenetics precursorsgenetics protein proteinsanalysisgenetics reaction reductasesanalysisgenetics reverse rna roc sequence splicing tags tissue transcriptase by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:00 as **
  • Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice
    Science, Vol. 301, No. 5631. (Jul 2003), pp. 376-379.
    by S Kikuchi, K Satoh, T Nagata, N Kawagashira, K Doi, N Kishimoto, J Yazaki, M Ishikawa, H Yamada, H Ooka, I Hotta, K Kojima, T Namiki, E Ohneda, W Yahagi, K Suzuki, CJ Li, K Ohtsuki, T Shishiki, Y Otomo, K Murakami, Y Iida, S Sugano, T Fujimura, Y Suzuki, Y Tsunoda, T Kurosaki, T Kodama, H Masuda, M Kobayashi, Q Xie, M Lu, R Narikawa, A Sugiyama, K Mizuno, S Yokomizo, J Niikura, R Ikeda, J Ishibiki, M Kawamata, A Yoshimura, J Miura, T Kusumegi, M Oka, R Ryu, M Ueda, K Matsubara, J Kawai, P Carninci, J Adachi, K Aizawa, T Arakawa, S Fukuda, A Hara, W Hashizume, N Hayatsu, K Imotani, Y Ishii, M Itoh, I Kagawa, S Kondo, H Konno, A Miyazaki, N Osato, Y Ota, R Saito, D Sasaki, K Sato, K Shibata, A Shinagawa, T Shiraki, M Yoshino, Y Hayashizaki, A Yasunishi
    posted to 0500 20030802 acid alternative amino analysis antisensegenetics biology cloning complementary computational data databases dna factorschemistrygenetics frames genes genetic genome govt homology molecular non-us nucleic open oryza plant protein proteinschemistrygeneticsphysiology reading research rna sativagenetics sequence splicing structure support tertiary transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:00 as **
  • Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences
    Nucleic Acids Res, Vol. 32, No. 17. (2004), pp. 5096-5103.
    by K Iida, M Seki, T Sakurai, M Satou, K Akiyama, T Toyoda, A Konagaya, K Shinozaki
    posted to 0900 20041013 alternative arabidopsisgeneticsgrowth base chromosome cold complementarychemistry developmentmetabolism dna genome govt mapping messengermetabolism non-us plant plantmetabolism precursorsmetabolism research rna sequence splicing support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as **
  • Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome
    Genome Res, Vol. 13, No. 6B. (Jun 2003), pp. 1290-1300.
    by M Zavolan, S Kondo, C Schonbach, J Adachi, DA Hume, Y Hayashizaki, T Gaasterland
    posted to 0500 20030812 alternative analysis animals biologymethodsstatistics cluster comparative computational data databases exonsgenetics genes geneticgenetics geneticsgeneticsphysiology geneticstatistics genome govt initiation messengergeneticsphysiology mice non-phs non-us numerical phs polypyrimidine proteingenetics proteomegenetics research rna sitephysiology sitesgenetics splice splicinggenetics splicinggeneticsphysiology structuralgeneticsphysiology study support tract-binding transcription us variation by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as **
  • Computational analysis of full-length mouse cDNAs compared with human genome sequences
    Mamm Genome, Vol. 12, No. 9. (Sep 2001), pp. 673-677.
    by S Kondo, A Shinagawa, T Saito, H Kiyosawa, I Yamanaka, K Aizawa, S Fukuda, A Hara, M Itoh, J Kawai, K Shibata, Y Hayashizaki
    posted to 1001 20020105 acid algorithms analysis animals biologymethods comparative complementarygenetics computational data databases dna dnamethods exons factual genome govt homology human humans introns mice molecular non-us nucleic research sequence study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as **
  • Integrative annotation of 21,037 human genes validated by full-length cDNA clones
    PLoS Biol, Vol. 2, No. 6. (Jun 2004)
    by T Imanishi, T Itoh, Y Suzuki, C O'Donovan, S Fukuchi, KO Koyanagi, RA Barrero, T Tamura, Yamaguchi Y Kabata, M Tanino, K Yura, S Miyazaki, K Ikeo, K Homma, A Kasprzyk, T Nishikawa, M Hirakawa, Thierry J Mieg, Thierry D Mieg, J Ashurst, L Jia, M Nakao, MA Thomas, N Mulder, Y Karavidopoulou, L Jin, S Kim, T Yasuda, B Lenhard, E Eveno, Y Suzuki, C Yamasaki, J Takeda, C Gough, P Hilton, Y Fujii, H Sakai, S Tanaka, C Amid, M Bellgard, Bonaldo F Mde, H Bono, SK Bromberg, AJ Brookes, E Bruford, P Carninci, C Chelala, C Couillault, SJ de Souza, MA Debily, MD Devignes, I Dubchak, T Endo, A Estreicher, E Eyras, Fukami K Kobayashi, GR Gopinath, E Graudens, Y Hahn, M Han, ZG Han, K Hanada, H Hanaoka, E Harada, K Hashimoto, U Hinz, M Hirai, T Hishiki, I Hopkinson, S Imbeaud, H Inoko, A Kanapin, Y Kaneko, T Kasukawa, J Kelso, P Kersey, R Kikuno, K Kimura, B Korn, V Kuryshev, I Makalowska, T Makino, S Mano, Mariage R Samson, J Mashima, H Matsuda, HW Mewes, S Minoshima, K Nagai, H Nagasaki, N Nagata, R Nigam, O Ogasawara, O Ohara, M Ohtsubo, N Okada, T Okido, S Oota, M Ota, T Ota, T Otsuki, Piatier D Tonneau, A Poustka, SX Ren, N Saitou, K Sakai, S Sakamoto, R Sakate, I Schupp, F Servant, S Sherry, R Shiba, N Shimizu, M Shimoyama, AJ Simpson, B Soares, C Steward, M Suwa, M Suzuki, A Takahashi, G Tamiya, H Tanaka, T Taylor, JD Terwilliger, P Unneberg, V Veeramachaneni, S Watanabe, L Wilming, N Yasuda, HS Yoo, M Stodolsky, W Makalowski, M Go, K Nakai, T Takagi, M Kanehisa, Y Sakaki, J Quackenbush, Y Okazaki, Y Hayashizaki, W Hide, R Chakraborty, K Nishikawa, H Sugawara, Y Tateno, Z Chen, M Oishi, P Tonellato, R Apweiler, K Okubo, L Wagner, S Wiemann, RL Strausberg, T Isogai, C Auffray, N Nomura, T Gojobori, S Sugano
    posted to 0900 20050208 alternative biologymethods complementarygenetics computational databases dna framesgenetics genesgeneticsphysiology genetic genome govt human humans internet microsatellite non-phs non-us nucleotide open phs polymorphism protein reading repeatsgenetics research single splicinggenetics structure support tertiary us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:58 as **
  • Genome-wide assembly and analysis of alternative transcripts in mouse
    Genome Res, Vol. 15, No. 5. (May 2005), pp. 748-754.
    by AA Sharov, DB Dudekula, MS Ko
    posted to 0900 20050610 algorithms alternative analysis animals base biologymethods comparative computational data databases dna genesgenetics genetic genome micegenetics molecular sequence splicinggenetics study by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:57 as **
  • C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression
    Nat Genet, Vol. 34, No. 1. (May 2003), pp. 35-41.
    by J Reboul, P Vaglio, JF Rual, P Lamesch, M Martinez, CM Armstrong, S Li, L Jacotot, N Bertin, R Janky, T Moore, Hudson, JL Hartley, MA Brasch, J Vandenhaute, S Boulton, GA Endress, S Jenna, E Chevet, V Papasotiropoulos, PP Tolias, J Ptacek, M Snyder, R Huang, MR Chance, H Lee, Doucette L Stamm, DE Hill, M Vidal
    posted to 0500 20030528 alternative animals caenorhabditis cloning complementarygenetics databases dna elegansgenetics exons expressed expression frames gene genes genetic genome genomics govt helminth helminthgenetics humans introns molecular non-us open phs proteinsgenetics proteome proteomics reading research sequence splicing support tags us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:54 as **
  • Genome-wide detection of tissue-specific alternative splicing in the human transcriptome
    Nucleic Acids Res, Vol. 30, No. 17. (Sep 2002), pp. 3754-3766.
    by Q Xu, B Modrek, C Lee
    posted to 0400 20021126 acid alternative amino biologystatistics brainmetabolism cdc42 computational data dna-binding expressed expression factorsgenetics female gene geneticgenetics genome govt gtp-binding homology human humans isoformsgenetics library male molecular non-phs numerical profiling protein proteingenetics proteinsgenetics research sequence splicinggenetics support tags transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:54 as **
  • ISIS, the intron information system, reveals the high frequency of alternative splicing in the human genome
    Nat Genet, Vol. 24, No. 4. (Apr 2000), pp. 340-341.
    by L Croft, S Schandorff, F Clark, K Burrage, P Arctander, JS Mattick
    posted to 0900 20000508 alternative biology computational databases exonsgenetics expressed factualtrends frequency gene genome human humans intronsgenetics isoformsgenetics messengergenetics protein rna sequence splicinggenetics tags by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as **
  • Gene structure prediction and alternative splicing analysis using genomically aligned ESTs
    Genome Res, Vol. 11, No. 5. (May 2001), pp. 889-900.
    by Z Kan, EC Rouchka, WR Gish, DJ States
    posted to 1001 20010629 alignmentinstrumentationmethods alternative biologyinstrumentationmethods comparative computational expressed genes genetic genome govt human humans messengermetabolism non-phs phs research rna sequence software splicinggenetics structuralgenetics study support tags transcription us validation by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as **
  • In silico screening for tumour-specific expressed sequences in human genome
    FEBS Lett, Vol. 508, No. 1. (Nov 2001), pp. 143-148.
    by AV Baranova, AV Lobashev, DV Ivanov, LL Krukovskaya, NK Yankovsky, AP Kozlov
    posted to 1001 20020105 databases expressed expression gene genes genetic genome human humans library neoplasm neoplasmsgenetics profilingmethods sequence structural tags by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as **
  • How prevalent is functional alternative splicing in the human genome?
    Trends Genet, Vol. 20, No. 2. (Feb 2004), pp. 68-71.
    by R Sorek, R Shamir, G Ast
    posted to 0500 20040310 alternative comparative evolution exons expressed genetic genome human humans introns models molecular rna sequence sites splice splicinggenetics study tags by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as **
  • Alternative splicing and genome complexity
    Nat Genet, Vol. 30, No. 1. (Jan 2002), pp. 29-30.
    by D Brett, H Pospisil, J Valcarcel, J Reich, P Bork
    posted to 1001 20020205 alternative animals cattle expressed geneticsgenetics genome humans messengergenetics mice rats rna sequence splicing tags variation by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as **
  • Alternative splicing of conserved exons is frequently species-specific in human and mouse
    Trends Genet, Vol. 21, No. 2. (Feb 2005), pp. 73-77.
    by Q Pan, MA Bakowski, Q Morris, W Zhang, BJ Frey, TR Hughes, BJ Blencowe
    posted to 0900 20050409 alternative animals exons expressed genetic genome govt humans mice models non-us protein research sequence software species specificity splicing structure support tags tertiary by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as **
  • Alternative splicing, the gene concept, and evolution
    Hist Philos Life Sci, Vol. 26, No. 1. (2004)
    by SM Downes
    posted to 0900 20050511 alternative animals biology concept evolution formation genes genome human humans molecular philosophy splicinggenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:52 as **
  • Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments
    Trends Genet, Vol. 21, No. 2. (Feb 2005), pp. 93-102.
    by JM Johnson, S Edwards, D Shoemaker, EE Schadt
    posted to 0900 20050409 22 analysismethods animals antisensechemistry array biology chromosomes complementarymetabolism computational dna exons genetic genome human humans introns isoforms messengerchemistrymetabolism models oligonucleotide oligonucleotides pair protein rna sequence software statistics transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:50 as **
  • Empirical analysis of transcriptional activity in the Arabidopsis genome
    Science, Vol. 302, No. 5646. (Oct 2003), pp. 842-846.
    by K Yamada, J Lim, JM Dale, H Chen, P Shinn, CJ Palm, AM Southwick, HC Wu, C Kim, M Nguyen, P Pham, R Cheuk, Karlin G Newmann, SX Liu, B Lam, H Sakano, T Wu, G Yu, M Miranda, HL Quach, M Tripp, CH Chang, JM Lee, M Toriumi, MM Chan, CC Tang, CS Onodera, JM Deng, K Akiyama, Y Ansari, T Arakawa, J Banh, F Banno, L Bowser, S Brooks, P Carninci, Q Chao, N Choy, A Enju, AD Goldsmith, M Gurjal, NF Hansen, Y Hayashizaki, Johnson C Hopson, VW Hsuan, K Iida, M Karnes, S Khan, E Koesema, J Ishida, PX Jiang, T Jones, J Kawai, A Kamiya, C Meyers, M Nakajima, M Narusaka, M Seki, T Sakurai, M Satou, R Tamse, M Vaysberg, EK Wallender, C Wong, Y Yamamura, S Yuan, K Shinozaki, RW Davis, A Theologis, JR Ecker
    posted to 0500 20031210 acid analysis arabidopsisgenetics array biology chain chromosome chromosomes cloning complementarygenetics computational dna expressed expression frames gene genes genetic genome genomics govt hybridization intergenic mapping messengergenetics molecular non-phs non-us nucleic oligonucleotide open plant plantgenetics polymerase profiling reaction reading research reverse rna sequence support tags transcriptase transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:49 as **
  • Global identification of human transcribed sequences with genome tiling arrays
    Science, Vol. 306, No. 5705. (Dec 2004), pp. 2242-2246.
    by P Bertone, V Stolc, TE Royce, JS Rozowsky, AE Urban, X Zhu, JL Rinn, W Tongprasit, M Samanta, S Weissman, M Gerstein, M Snyder
    posted to 0900 20050120 acid analysismethods animals array base biology chain complementary computational conserved cpg databases dna exons genetic genome govt homology human humans hybridization intergenic introns islands messengergenetics mice nucleic of oligonucleotide phs polymerase probes proteinschemistrygenetics reaction reproducibility research results reverse rna sequence support transcriptase transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:47 as **
  • Experimental annotation of the human genome using microarray technology
    Nature, Vol. 409, No. 6822. (Feb 2001), pp. 922-927.
    by DD Shoemaker, EE Schadt, CD Armour, YD He, Garrett P Engele, PD Mcdonagh, PM Loerch, A Leonardson, PY Lum, G Cavet, LF Wu, SJ Altschuler, S Edwards, J King, JS Tsang, G Schimmack, JM Schelter, J Koch, M Ziman, MJ Marton, B Li, P Cundiff, T Ward, J Castle, M Krolewski, MR Meyer, M Mao, J Burchard, MJ Kidd, H Dai, JW Phillips, PS Linsley, R Stoughton, S Scherer, MS Boguski
    posted to 1001 20010327 22 algorithms alternative analysis array biology cell chromosomes complementary computational dna exons genome human humans line oligonucleotide pair probes project sequence splicing by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:46 as **
  • A comprehensive transcript index of the human genome generated using microarrays and computational approaches
    Genome Biol, Vol. 5, No. 10. (2004)
    by EE Schadt, SW Edwards, D Guhathakurta, D Holder, L Ying, V Svetnik, A Leonardson, KW Hart, A Russell, G Li, G Cavet, J Castle, P Mcdonagh, Z Kan, R Chen, A Kasarskis, M Margarint, RM Caceres, JM Johnson, CD Armour, Garrett PW Engele, NF Tsinoremas, DD Shoemaker
    posted to 0900 20050729 20genetics 22genetics analysis and array biology chromosomes computational conserved expression gene geneticgenetics genome human humans of oligonucleotide organ pair profiling reproducibility results