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Nøkkelord: chromatin [576 articles]

Nye artikler klassifisert med nøkkelordet chromatin.
  • Genome-wide approaches to studying chromatin modifications
    Nat Rev Genet, Vol. 9, No. 3. (March 2008), pp. 179-191.
    by Dustin E Schones, Keji Zhao
  • A genome-wide analysis in Saccharomyces cerevisiae demonstrates the influence of chromatin modifiers on transcription
    Nature Genetics, Vol. 39, No. 3. (26 February 2007), pp. 303-309.
    by Israel Steinfeld, Ron Shamir, Martin Kupiec
    posted to chromatin genome-wide transcription yeast by zwang on 2007-03-19 13:32:22 as **
  • Integration of Genome and Chromatin Structure with Gene Expression Profiles To Predict c-MYC Recognition Site Binding and Function.
    PLoS Comput Biol, Vol. 3, No. 4. (6 April 2007)
    by Yili Chen, Thomas W W Blackwell, Ji Chen, Jing Gao, Angel W W Lee, David J J States
  • Identification and Characterization of Cell Type-Specific and Ubiquitous Chromatin Regulatory Structures in the Human Genome.
    PLoS Genet, Vol. 3, No. 8. (17 August 2007)
    by Hualin Xi, Hennady P P Shulha, Jane M M Lin, Teresa R R Vales, Yutao Fu, David M M Bodine, Ronald D G D McKay, Josh G G Chenoweth, Paul J J Tesar, Terrence S S Furey, Bing Ren, Zhiping Weng, Gregory E E Crawford
  • Trawler: de novo regulatory motif discovery pipeline for chromatin immunoprecipitation
    Nature Methods, Vol. 4, No. 7. (24 June 2007), pp. 563-565.
    by Laurence Ettwiller, Benedict Paten, Mirana Ramialison, Ewan Birney, Joachim Wittbrodt
  • How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers
    Nature Structural & Molecular Biology, Vol. 14, No. 11. (05 November 2007), pp. 1025-1040.
    by Sean D Taverna, Haitao Li, Alexander J Ruthenburg, David C Allis, Dinshaw J Patel
  • Cross-regulation of histone modifications
    Nature Structural & Molecular Biology, Vol. 14, No. 11. (05 November 2007), pp. 1017-1024.
    by John A Latham, Sharon YR Dent
    posted to chromatin chromatin-remodeling-modification review by zhlei on 2007-12-05 19:36:06 as **
  • Transcription and RNAi in heterochromatic gene silencing
    Nature Structural & Molecular Biology, Vol. 14, No. 11. (05 November 2007), pp. 1041-1048.
    by Marc Bühler, Danesh Moazed
    posted to chromatin chromatin-remodeling-modification review by zhlei on 2007-12-05 19:34:47 as **
  • Covalent modifications of histones during development and disease pathogenesis
    Nature Structural & Molecular Biology, Vol. 14, No. 11. (05 November 2007), pp. 1008-1016.
    by Sukesh R Bhaumik, Edwin Smith, Ali Shilatifard
  • Chromatin remodeling: insights and intrigue from single-molecule studies
    Nature Structural & Molecular Biology, Vol. 14, No. 11. (05 November 2007), pp. 989-996.
    by Bradley R Cairns
  • Chromosomal proteins in the spermatogenesis of Drosophila.
    Chromosoma, Vol. 111, No. 8. (May 2003), pp. 489-494.
    by W Hennig
    posted to chromatin drosophila spermatogenesis by zhlei on 2005-04-20 02:52:02 as ** along with 1 person RMGraze
  • The DNA Damage Response: Ten Years After
    Molecular Cell, Vol. 28, No. 5. (14 December 2007), pp. 739-745.
    by Wade J Harper, Stephen J Elledge
  • RNF8 Transduces the DNA-Damage Signal via Histone Ubiquitylation and Checkpoint Protein Assembly.
    Cell, Vol. 131, No. 5. (30 November 2007), pp. 901-914.
    by MS Huen, R Grant, I Manke, K Minn, X Yu, MB Yaffe, J Chen
  • Chromatin modifications and their function.
    Cell, Vol. 128, No. 4. (23 February 2007), pp. 693-705.
  • Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin.
    Cell, Vol. 123, No. 2. (21 October 2005), pp. 233-248.
    by RM Raisner, PD Hartley, MD Meneghini, MZ Bao, CL Liu, SL Schreiber, OJ Rando, HD Madhani
    posted to acetylation chromatin histone histone-modification by zhlei on 2007-11-29 04:55:55 as **
  • Heterochromatin is refractory to gamma-H2AX modification in yeast and mammals
    J. Cell Biol., Vol. 178, No. 2. (16 July 2007), pp. 209-218.
    by Jung-Ae Kim, Michael Kruhlak, Farokh Dotiwala, Andre Nussenzweig, James E Haber
  • Single-nucleosome mapping of histone modifications in S. cerevisiae.
    PLoS Biol, Vol. 3, No. 10. (October 2005)
    by CL Liu, T Kaplan, M Kim, S Buratowski, SL Schreiber, N Friedman, OJ Rando
  • Acetylation by Tip60 is required for selective histone variant exchange at DNA lesions.
    Science, Vol. 306, No. 5704. (17 December 2004), pp. 2084-2087.
    by T Kusch, L Florens, WH Macdonald, SK Swanson, RL Glaser, JR Yates, SM Abmayr, MP Washburn, JL Workman
  • Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF
    Nature, Vol. 442, No. 7098. (21 May 2006), pp. 91-95.
    by Haitao Li, Serge Ilin, Wooikoon Wang, Elizabeth M Duncan, Joanna Wysocka, David C Allis, Dinshaw J Patel
  • PHD Domain-Mediated E3 Ligase Activity Directs Intramolecular Sumoylation of an Adjacent Bromodomain Required for Gene Silencing.
    Mol Cell, Vol. 28, No. 5. (14 December 2007), pp. 823-837.
    by AV Ivanov, H Peng, V Yurchenko, KL Yap, DG Negorev, DC Schultz, E Psulkowski, WJ Fredericks, DE White, GG Maul, MJ Sadofsky, MM Zhou, FJ Rauscher
    posted to bromodomain chromatin chromatin-remodeling-modification phd by zhlei on 2007-12-19 19:26:21 as **
  • Chromatin challenges during DNA replication and repair.
    Cell, Vol. 128, No. 4. (23 February 2007), pp. 721-733.
    posted to chromatin chromatin-remodeling-modification dna-damage repair review by zhlei on 2007-11-24 02:58:27 as **
  • A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling
    Nature, Vol. 442, No. 7098. (21 May 2006), pp. 86-90.
    by Joanna Wysocka, Tomek Swigut, Hua Xiao, Thomas A Milne, So Y Kwon, Joe Landry, Monika Kauer, Alan J Tackett, Brian T Chait, Paul Badenhorst, Carl Wu, David C Allis
  • Gene regulationA finger on the mark
    Nature, Vol. 442, No. 7098. (05 July 2006), pp. 31-32.
    by Peter B Becker
  • Acetylation of H2AZ Lys 14 is associated with genome-wide gene activity in yeast.
    Genes Dev, Vol. 20, No. 6. (15 March 2006), pp. 711-722.
    by CB Millar, F Xu, K Zhang, M Grunstein
    posted to chromatin histone histone-modification by zhlei on 2007-11-29 15:40:19 as **
  • The effect of poly(ADP-ribosyl)ation on native and H1-depleted chromatin. A role of poly(ADP-ribosyl)ation on core nucleosome structure.
    J Biol Chem, Vol. 264, No. 15. (25 May 1989), pp. 8878-8886.
    posted to chromatin chromatinremodeling histones par parp by yedmonds on 2005-06-22 20:37:41 as **
  • Poly(ADP-ribose) may signal changing metabolic conditions to the chromatin of mammalian cells.
    Proc Natl Acad Sci U S A, Vol. 84, No. 5. (March 1987), pp. 1286-1289.
    posted to chromatin par by yedmonds on 2005-06-22 20:26:46 as read
  • Nuclear protein modification and chromatin substructure. 2. Internucleosomal localization of poly(adenosine diphosphate-ribose) polymerase.
    Biochemistry, Vol. 17, No. 17. (22 August 1978), pp. 3501-3504.
    by CP Giri, MH West, ML Ramirez, M Smulson
    posted to chromatin par by yedmonds on 2005-06-22 18:05:13 as *
  • Nuclear protein modification and chromatin substructure. 1. Differential poly(adenosine diphosphate) ribosylation of chromosomal proteins in nuclei versus isolated nucleosomes.
    Biochemistry, Vol. 17, No. 17. (22 August 1978), pp. 3495-3500.
    by CP Giri, MH West, M Smulson
    posted to chromatin par by yedmonds on 2005-06-22 18:04:52 as *
  • Poly(ADP-ribosyl)ation of chromatin in an in-vitro poly(ADP-ribose)-turnover system.
    Biochim Biophys Acta, Vol. 1137, No. 2. (27 October 1992), pp. 171-181.
    posted to chromatin par by yedmonds on 2005-06-27 17:38:54 as **
  • RNA meets chromatin.
    Genes Dev, Vol. 19, No. 14. (15 July 2005), pp. 1635-1655.
    by E Bernstein, CD Allis
  • Chromatin structure and evolution in the human genome
    BMC Evolutionary Biology, Vol. 7 (09 May 2007), 72.
    by James GD Prendergast, Harry Campbell, Nick Gilbert, Malcolm G Dunlop, Wendy A Bickmore, Colin AM Semple
    posted to evolution chromatin by vega on 2008-04-25 06:32:30 as **
  • High-throughput mapping of the chromatin structure of human promoters
    Nat Biotech, Vol. 25, No. 2. (February 2007), pp. 244-248.
    by Fatih Ozsolak, Jun S Song, Shirley X Liu, David E Fisher
  • EPIGENOMICS: BEYOND CPG ISLANDS
    Nat Rev Genet, Vol. 5, No. 6. (June 2004), pp. 446-455.
    by Melissa J Fazzari, John M Greally
    posted to chromatin by vega on 2008-04-07 08:09:18 as ** along with 2 people rdiaz olympos
  • Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
    Nature (07 May 2008)
    by Lars Guelen, Ludo Pagie, Emilie Brasset, Wouter Meuleman, Marius B Faza, Wendy Talhout, Bert H Eussen, Annelies de Klein, Lodewyk Wessels, Wouter de Laat, Bas van Steensel
    posted to nucleosome epigenetic chromatin by vega on 2008-06-20 06:22:00 as ** along with 1 person rschulz
  • Cyclical DNA methylation of a transcriptionally active promoter
    Nature, Vol. 452, No. 7183. (6 March 2008), pp. 45-50.
    by Raphael Metivier, Rozenn Gallais, Christophe Tiffoche, Christine Le Peron, Renata Z Jurkowska, Richard P Carmouche, David Ibberson, Peter Barath, Florence Demay, George Reid, Vladimir Benes, Albert Jeltsch, Frank Gannon, Gilles Salbert
    posted to chromatin tfbs by vega on 2008-03-06 10:38:31 as ** along with 3 people djkt epigenetics clearbluespring
  • Transient cyclical methylation of promoter DNA
    Nature, Vol. 452, No. 7183. (6 March 2008), pp. 112-115.
    by Sara Kangaspeska, Brenda Stride, Raphael Metivier, Maria Polycarpou-Schwarz, David Ibberson, Richard P Carmouche, Vladimir Benes, Frank Gannon, George Reid
    posted to chromatin tfbs by vega on 2008-03-06 10:38:18 as ** along with 4 people djkt maximilianh clearbluespring dunnp
  • A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning
    Genome Res. (13 May 2008), gr.076463.108.
    by Anton Valouev, Jeffrey Ichikawa, Thaisan Tonthat, Jeremy Stuart, Swati Ranade, Heather Peckham, Kathy Zeng, Joel A Malek, Gina Costa, Kevin Mckernan, Arend Sidow, Andrew Fire, Steven M Johnson
  • A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
    Genome Res. (12 June 2008), gr.078261.108.
    by Travis N Mavrich, Ilya P Ioshikhes, Bryan J Venters, Cizhong Jiang, Lynn P Tomsho, Ji Qi, Stephan C Schuster, Istvan Albert, Franklin B Pugh
    posted to histone epigenetic chromatin bioinformatics by vega on 2008-06-13 04:06:08 as *** along with 1 person aalibes
  • Translational and rotational settings of H2A.Z nucleosomes across the Saccharomycescerevisiae genome
    Nature, Vol. 446, No. 7135., pp. 572-576.
    by Istvan Albert, Travis N Mavrich, Lynn P Tomsho, Ji Qi, Sara J Zanton, Stephan C Schuster, Franklin B Pugh
  • Dynamic Remodeling of Individual Nucleosomes Across a Eukaryotic Genome in Response to Transcriptional Perturbation
    PLoS Biology, Vol. 6, No. 3. (1 March 2008), e65.
    by Sushma Shivaswamy, Akshay Bhinge, Yongjun Zhao, Steven Jones, Martin Hirst, Vishwanath R Iyer
  • DNA Immunoprecipitation (DIP) for the Determination of DNA-Binding Specificity
    Cold Spring Harbor Protocols, Vol. 2008, No. 4. (1 March 2008), pdb.prot4972.
    by Andrea J Gossett, Jason D Lieb
    posted to tfbs chromatin by vega on 2008-06-18 09:40:17 as ** along with 2 people jyuh dacrotty
  • ChIP-Seq Data Reveal Nucleosome Architecture of Human Promoters
    Cell, Vol. 131, No. 5. (30 November 2007), pp. 831-832.
    by Christoph D Schmid, Philipp Bucher
  • Dynamic Regulation of Nucleosome Positioning in the Human Genome
    Cell, Vol. 132, No. 5. (7 March 2008), pp. 887-898.
    by Dustin E Schones, Kairong Cui, Suresh Cuddapah, Tae-Young Roh, Artem Barski, Zhibin Wang, Gang Wei, Keji Zhao
  • An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)
    Genome Res. (24 June 2008), gr.077479.108.
    by Vardhman Rakyan, Thomas Down, Natalie Thorne, Paul Flicek, Eugene Kulesha, Stefan Graf, Eleni Tomazou, Liselotte Backdahl, Nathan Johnson, Marils Herberth, Kevin Howe, David Jackson, Marcos Miretti, Heike Fiegler, John Marioni, Ewan Birney, Tim Hubbard, Nigel Carter, Simon Tavare, Stephan Beck
  • An intact histone 3'-processing site is required for transcription termination in a mouse histone H2a gene.
    Molecular and cellular biology, Vol. 11, No. 1. (January 1991), pp. 497-509.
    by N Chodchoy, NB Pandey, WF Marzluff
    posted to transcription-termination histone epigenetic chromatin by vega on 2008-05-15 10:27:58 as **
  • Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
    Nature (01 July 2007)
    by Tarjei S Mikkelsen, Manching Ku, David B Jaffe, Biju Issac, Erez Lieberman, Georgia Giannoukos, Pablo Alvarez, William Brockman, Tae-Kyung Kim, Richard P Koche, William Lee, Eric Mendenhall, Aisling O’donovan, Aviva Presser, Carsten Russ, Xiaohui Xie, Alexander Meissner, Marius Wernig, Rudolf Jaenisch, Chad Nusbaum, Eric S Lander, Bradley E Bernstein
  • 3' Processing and termination of mouse histone transcripts synthesized in vitro by RNA polymerase II
    Nucl. Acids Res., Vol. 24, No. 19. (1 October 1996), pp. 3797-3805.
    by X Gu, WF Marzluff
    posted to transcription-termination histone epigenetic chromatin by vega on 2008-05-15 09:32:11 as **
  • Transcription termination and 3' processing: the end is in site!
    Cell, Vol. 41, No. 2. (June 1985), pp. 349-359.
    posted to transcription-termination epigenetic chromatin by vega on 2008-05-15 09:30:17 as **
  • The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II.
    Nature, Vol. 432, No. 7016. (25 November 2004), pp. 517-522.
    by M Kim, NJ Krogan, L Vasiljeva, OJ Rando, E Nedea, JF Greenblatt, S Buratowski
    posted to transcription-termination epigenetic chromatin by vega on 2008-05-15 09:25:39 as **
  • Human 5' --> 3' exonuclease Xrn2 promotes transcription termination at co-transcriptional cleavage sites.
    Nature, Vol. 432, No. 7016. (25 November 2004), pp. 522-525.
    by S West, N Gromak, NJ Proudfoot
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