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Nøkkelord: domain [384 articles]

Nye artikler klassifisert med nøkkelordet domain.
  • Reuse of structural domain-domain interactions in protein networks
    BMC Bioinformatics, Vol. 8 (18 July 2007), 259.
    by Benjamin Schuster-Bockler, Alex Bateman
  • Sequence Similarity Network Reveals Common Ancestry of Multidomain Proteins
    PLoS Comput Biol, Vol. 4, No. 5. (16 May 2008), e1000063.
    by Nan Song, Jacob M Joseph, George B Davis, Dannie Durand
    posted to domain protein by zwang on 2008-06-27 04:08:47 as **** along with 2 people tmmurali Ema
  • Detecting Coevolution in and among Protein Domains
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e211.
    by Chen-Hsiang Yeang, David Haussler
  • Prediction of structures of multidomain proteins from structures of the individual domains.
    Protein Sci (22 December 2006)
    by Andrew M M Wollacott, Alexandre Zanghellini, Paul Murphy, David Baker
  • Detecting the Coevolution in and among Protein Domains
    PLoS Computational Biology, Vol. preprint, No. 2007. (1 September 2007), e211.eor.
    by Chen-Hsiang Yeang, David Haussler
    posted to co-evolution domain protein by zwang on 2007-09-22 08:05:24 as ***
  • Identification of Protein Domains by Shotgun Proteolysis
    Journal of Molecular Biology, Vol. In Press, Corrected Proof
    by Daniel Christ, Greg Winter
    posted to structure protein domain by zwang on 2008-09-16 14:28:20 as ** along with 1 person tny
  • The Modular Organization of Domain Structures: Insights into Protein–Protein Binding
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e239.
    by Del, Pablo Carbonell
  • Evolution of Function in the “Two Dinucleotide Binding Domains” Flavoproteins
    PLoS Computational Biology, Vol. 3, No. 7. (1 July 2007), e121.
    by Sunil Ojha, Elaine C Meng, Patricia C Babbitt
  • Structure of the Chloroplast Ribosome: Novel Domains for Translation Regulation
    PLoS Biology, Vol. 5, No. 8. (1 August 2007), e209.
    by Andrea L Manuell, Joel Quispe, Stephen P Mayfield
    posted to domain regulation structure translation by zwang on 2007-08-15 06:29:51 as *
  • Domain-enhanced analysis of microarray data using GO annotations
    Bioinformatics, Vol. 23, No. 10. (15 May 2007), pp. 1225-1234.
    by Jiajun Liu, Jacqueline M Hughes-Oliver, Alan J Menius
    posted to annotation domain microarray by zwang on 2007-05-29 02:25:26 as ** along with 2 people jyuh jfr
  • PDZ Domain Binding Selectivity Is Optimized Across the Mouse Proteome
    Science, Vol. 317, No. 5836. (20 July 2007), pp. 364-369.
    by Michael A Stiffler, Jiunn R Chen, Viara P Grantcharova, Ying Lei, Daniel Fuchs, John E Allen, Lioudmila A Zaslavskaia, Gavin Macbeath
  • An intramolecular FRET system monitors fingers subdomain opening in Klentaq1
    Protein Sci, Vol. 17, No. 3. (1 March 2008), pp. 401-408.
    by William J Allen, Paul J Rothwell, Gabriel Waksman
    posted to domain fret invivo subunit by zwang on 2008-02-22 12:42:25 as ***
  • Evolution of protein domain promiscuity in eukaryotes
    Genome Res. (29 January 2008), gr.6943508.
    by Malay K Basu, Liran Carmel, Igor B Rogozin, Eugene V Koonin
  • Analysis on multi-domain cooperation for predicting protein-protein interactions
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Rui S Wang, Yong Wang, Ling Y Wu, Xiang S Zhang, Luonan Chen
  • Modeling the Evolution of Protein Domain Architectures Using Maximum Parsimony
    Journal of Molecular Biology, Vol. 366, No. 1. (9 February 2007), pp. 307-315.
    by Jessica H Fong, Lewis Y Geer, Anna R Panchenko, Stephen H Bryant
  • Predicting protein function from domain content
    Bioinformatics (30 June 2008), btn312.
    by Kristoffer Forslund, Erik L Sonnhammer
    posted to domain prediction protein by zwang on 2008-07-01 02:44:42 as *** along with 3 people druvus phoenixzxl reyez
  • A Protein Domain-Based Interactome Network for C. elegans Early Embryogenesis
    Cell, Vol. 134, No. 3. (8 August 2008), pp. 534-545.
    by Mike Boxem, Zoltan Maliga, Niels Klitgord, Na Li, Irma Lemmens, Miyeko Mana, Lorenzo de Lichtervelde, Joram D Mul, Diederik van de Peut, Maxime Devos, Nicolas Simonis, Muhammed A Yildirim, Murat Cokol, Huey-Ling Kao, Anne-Sophie de Smet, Haidong Wang, Anne-Lore Schlaitz, Tong Hao, Stuart Milstein, Changyu Fan, Mike Tipsword, Kevin Drew, Matilde Galli, Kahn Rhrissorrakrai, David Drechsel, Daphne Koller, Frederick P Roth, Lilia M Iakoucheva, Keith A Dunker, Richard Bonneau, Kristin C Gunsalus, David E Hill, Fabio Piano, Jan Tavernier, Sander van den Heuvel, Anthony A Hyman, Marc Vidal
  • Message-Passing Algorithms for the Prediction of Protein Domain Interactions from Protein-Protein Interaction Data
    Bioinformatics (17 July 2008), btn366.
    by Mudassar Iqbal, Alex A Freitas, Colin G Johnson, Massimo Vergassola
  • Phylogenetic analysis of condensation domains in NRPS sheds light on their functional evolution
    BMC Evolutionary Biology, Vol. 7 (16 May 2007), 78.
    by Chrstian Rausch, Ilka Hoof, Tilmann Weber, Wolfgang Wohlleben, Daniel H Huson
    posted to domain evolution phylogeny by zwang on 2007-06-14 02:21:21 as **
  • Design of protein function leaps by directed domain interface evolution
    Proceedings of the National Academy of Sciences (29 April 2008), 0801097105.
    by Jin Huang, Akiko Koide, Koki Makabe, Shohei Koide
  • Functional evaluation of domain-domain interactions and human protein interaction networks
    Bioinformatics, Vol. 23, No. 7. (1 April 2007), pp. 859-865.
    by Andreas Schlicker, Carola Huthmacher, Fidel Ramirez, Thomas Lengauer, Mario Albrecht
    posted to domain interaction network protein by zwang on 2007-04-29 05:10:56 as *** along with 1 person carlk
  • Evolutionary Genomics: Transdomain Gene Transfers
    Current Biology, Vol. 17, No. 21. (6 November 2007), pp. R935-R936.
    by Seth R Bordenstein
    posted to domain evolution genome by zwang on 2007-11-16 06:44:29 as ** along with 3 people skhadar mblwhoi hpaces
  • Predicting PDZ domain–peptide interactions from primary sequences
    Nature Biotechnology, Vol. 26, No. 9. (17 August 2008), pp. 1041-1045.
    by Jiunn R Chen, Bryan H Chang, John E Allen, Michael A Stiffler, Gavin Macbeath
  • Built-in loops allow versatility in domain–domain interactions: Lessons from self-interacting domains
    Proceedings of the National Academy of Sciences, Vol. 105, No. 36. (2008), pp. 13292-13297.
    by Eyal Akiva, Zohar Itzhaki, Hanah Margalit
    posted to interaction domain by zwang on 2008-09-11 02:51:51 as ** along with 2 people icq242500260 marck
  • Specific binding of a Pop6/Pop7 heterodimer to the P3 stem of the yeast RNase MRP and RNase P RNAs
    RNA (23 August 2007), rna.654407.
    by Anna Perederina, Olga Esakova, Hasan Koc, Mark E Schmitt, Andrey S Krasilnikov
    posted to binding domain rna rnasep site yeast by zwang on 2007-09-02 07:31:22 as *****
  • Interaction of signal-recognition particle 54 GTPase domain and signal-recognition particle RNA in the free signal-recognition particle
    Proceedings of the National Academy of Sciences, Vol. 104, No. 38. (18 September 2007), pp. 14911-14916.
    by Tobias Hainzl, Shenghua Huang, Elisabeth A Sauer-Eriksson
    posted to domain interaction rna by zwang on 2007-11-01 02:11:19 as **
  • An integrative approach for predicting interactions of protein regions
    Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i35-41.
    by Sven-Eric Schelhorn, Thomas Lengauer, Mario Albrecht
    posted to domain interaction prediction protein by zwang on 2008-08-11 04:13:26 as **** along with 2 people neils kluck
  • Functional coherence in domain interaction networks
    Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i28-34.
    by Jayesh Pandey, Mehmet Koyuturk, Shankar Subramaniam, Ananth Grama
    posted to domain interaction network by zwang on 2008-08-11 03:58:01 as ** along with 1 person phoenixzxl
  • Structural insights into the interaction of the evolutionarily conserved ZPR1 domain tandem with eukaryotic EF1A, receptors, and SMN complexes
    Proceedings of the National Academy of Sciences, Vol. 104, No. 35. (28 August 2007), pp. 13930-13935.
    by Ashwini K Mishra, Laxman Gangwani, Roger J Davis, David G Lambright
    posted to complex domain eukaryota evolution interaction structure by zwang on 2007-11-01 02:01:47 as ***
  • Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners
    PLoS Computational Biology, Vol. 3, No. 4. (1 April 2007), e43.
    by Benjamin A Shoemaker, Anna R Panchenko
  • The Leucine-Rich Repeat Domain of Internalin B Folds along a Polarized N-Terminal Pathway
    Structure, Vol. 16, No. 5. (7 May 2008), pp. 705-714.
    by Naomi Courtemanche, Doug Barrick
    posted to domain protein by zwang on 2008-06-26 04:08:33 as **
  • Detecting Coevolution in and among Protein Domains
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e211.
    by Chen-Hsiang Yeang, David Haussler
    posted to co-evolution domain prediction protein by zwang on 2007-11-03 03:07:56 as **** along with 1 person cjeans
  • Photonic Generation of Ultrawideband Signals
    Lightwave Technology, Journal of, Vol. 25, No. 11. (2007), pp. 3219-3235.
    by Jianping Yao, Fei Zeng, Qing Wang
    posted to domain frequency generate optical range signals techniques ultrawideband uwb by ze on 2008-02-29 17:57:30 as read
  • The Domain Theory for Requirements Engineering
    IEEE Trans. Softw. Eng., Vol. 24, No. 3. (March 1998), pp. 174-196.
    by Alistair Sutcliffe, Neil Maiden
    posted to domain requirements theory by yijunyu on 2006-12-30 13:13:40 as **
  • A MADS domain gene involved in the transition to flowering in Arabidopsis.
    Plant J, Vol. 24, No. 5. (December 2000), pp. 591-599.
  • The PANTHER database of protein families, subfamilies, functions and pathways.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
  • Statistical analysis of domains in interacting protein pairs
    Bioinformatics, Vol. 21, No. 7. (01 April 2005), pp. 993-1001.
    by MW Nye, Berzuini Carlo, R Gilks, Babu M Madan, A Teichmann
  • Empirical estimates of adaptation: the chance of two noriegas is closer to p/2 than p<sup>2</sup>
    (2000), pp. 180-186.
    by Kenneth W Church
    posted to adaptation domain language modelling by vlachmore on 2007-10-24 14:25:02 as read
  • Structure-function relationships in human Class III alcohol dehydrogenase (formaldehyde dehydrogenase)
    Chemico-Biological Interactions, Vol. 143-144 (1 February 2003), pp. 195-200.
    by Paresh C Sanghani, Howard Robinson, Riccardo Bennett-Lovsey, Thomas D Hurley, WF Bosron
    posted to active domain structure by unglee on 2008-04-29 05:13:49 as **
  • Evolutionary history and higher order classification of AAA+ ATPases
    Journal of Structural Biology, Vol. 146, No. 1-2. (April 2004), pp. 11-31.
    by Lakshminarayan M Iyer, Detlef D Leipe, Eugene V Koonin, L Aravind
    posted to domain evolution p-loop by tny on 2006-05-07 05:59:41 as ** along with 1 person leemary4
  • Evolution of the protein repertoire.
    Science, Vol. 300, No. 5626. (13 June 2003), pp. 1701-1703.
    by C Chothia, J Gough, C Vogel, SA Teichmann
  • Novel specificities emerge by stepwise duplication of functional modules.
    Genome Res, Vol. 15, No. 4. (April 2005), pp. 552-559.
    posted to domain duplication by tny on 2006-01-23 12:53:19 as ** along with 3 people ushishir choonpeng cjeans
  • SCOPEC: a database of protein catalytic domains.
    Bioinformatics, Vol. 20 Suppl 1 (4 August 2004)
    posted to catalytic database_issue domain enzyme by tny on 2006-05-19 19:09:52 as ** along with 1 person gbart
  • GTOP: a database of protein structures predicted from genome sequences
    Nucl. Acids Res., Vol. 30, No. 1. (1 January 2002), pp. 294-298.
    by Takeshi Kawabata, Satoshi Fukuchi, Keiichi Homma, Motonori Ota, Jiro Araki, Takehiko Ito, Nobuyuki Ichiyoshi, Ken Nishikawa
    posted to database_issue domain prediction protein by tny on 2006-01-23 12:15:12 as **
  • Interaction and domain networks of yeast.
    Proteomics, Vol. 2, No. 12. (December 2002), pp. 1715-1723.
    by S Wuchty
    posted to domain network by tny on 2006-05-23 10:56:39 as **
  • The Relationship Between Domain Duplication and Recombination
    Journal of Molecular Biology, Vol. 346, No. 1. (11 February 2005), pp. 355-365.
    by Christine Vogel, Sarah A Teichmann, Jose Pereira-Leal
  • Comparative Genomics and Protein Domain Graph Analyses Link Ubiquitination and RNA Metabolism
    Journal of Molecular Biology, Vol. 357, No. 1. (17 March 2006), pp. 9-17.
    by Ignasi J Lucas, Vicente Arnau, Ignacio Marin
    posted to comparative domain metabolism by tny on 2006-06-06 10:20:02 as **
  • Different evolutionary histories of kringle and protease domains in serine proteases: a typical example of domain evolution.
    Journal of molecular evolution, Vol. 40, No. 3. (March 1995), pp. 331-336.
    posted to domain evolution protease by tny on 2008-08-18 06:53:42 as **
  • A novel family of P-loop NTPases with an unusual phyletic distribution and transmembrane segments inserted within the NTPase domain.
    Genome Biol, Vol. 5, No. 5. (2004)
    by L Aravind, LM Iyer, DD Leipe, EV Koonin
  • Domain combinations in archaeal, eubacterial and eukaryotic proteomes.
    J Mol Biol, Vol. 310, No. 2. (6 July 2001), pp. 311-325.
    by G Apic, J Gough, SA Teichmann
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