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Nøkkelord: ppi [665 articles]

Nye artikler klassifisert med nøkkelordet ppi.
  • Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e178.
    by Ramon Aragues, Andrej Sali, Jaume Bonet, Marc A Marti-Renom, Baldo Oliva
    posted to ppi motif hubs by winterschlaefer on 2008-05-11 12:17:02 as ** along with 2 people Ema zwang
  • Structure-Templated Predictions of Novel Protein Interactions from Sequence Information
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e182.
    by Doron Betel, Kevin E Breitkreuz, Ruth Isserlin, Danielle Dewar-Darch, Mike Tyers, Christopher W Hogue
    posted to structure prediction ppi by winterschlaefer on 2008-04-24 13:46:44 as ** along with 2 people cjeans zwang
  • Specificity in protein interactions and its relationship with sequence diversity and coevolution.
    Proc Natl Acad Sci U S A (27 April 2007)
    by Luke Hakes, Simon C C Lovell, Stephen G G Oliver, David L L Robertson
    posted to evolution ismb08 ppi by winterschlaefer on 2008-02-17 16:48:12 as ** along with 9 people and 2 groups stevanspringer bjorns cjeans zwang Garamonfok cursonivel1 tale phoenixzxl chrys FAB-lab cursonivel1
  • Still Stratus Not Altocumulus: Further Evidence against the Date/Party Hub Distinction
    PLoS Biology, Vol. 5, No. 6. (1 June 2007), e154.
    by Nizar N Batada, Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, Bobby-Joe Breitkreutz, Laurence D Hurst, Mike Tyers
    posted to hubs ppi by winterschlaefer on 2008-03-03 10:42:40 as ** along with 3 people cdeane antonkratz carlk
  • Confirmation of Organized Modularity in the Yeast Interactome
    PLoS Biology, Vol. 5, No. 6. (1 June 2007), e153.
    by Nicolas Bertin, Nicolas Simonis, Denis Dupuy, Michael E Cusick, Jing-Dong J Han, Hunter B Fraser, Frederick P Roth, Marc Vidal
    posted to hubs ppi by winterschlaefer on 2008-03-03 10:41:41 as ** along with 1 person kintoki
  • Stratus Not Altocumulus: A New View of the Yeast Protein Interaction Network.
    PLoS Biol, Vol. 4, No. 10. (19 September 2006)
    by Nizar N N Batada, Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, Bobby-Joe J Breitkreutz, Laurence D D Hurst, Mike Tyers
    posted to hubs ppi by winterschlaefer on 2008-03-03 10:40:57 as ** along with 6 people cdeane carlk aswin jpoyatos iris_2001 Evangelia
  • Evidence for dynamically organized modularity in the yeast protein-protein interaction network
    Nature, Vol. 430, No. 6995. (01 July 2004), pp. 88-93.
    by Jing-Dong J Han, Nicolas Bertin, Tong Hao, Debra S Goldberg, Gabriel F Berriz, Lan V Zhang, Denis Dupuy, Albertha JM Walhout, Michael E Cusick, Frederick P Roth, Marc Vidal
    posted to hubs ppi by winterschlaefer on 2008-03-03 10:39:28 as ** along with 23 people and 2 groups carlk ksiek kintoki ellakat frohike shikin dragonrez lfriedl balajis yoh j3xucite koller mikaelhuss ruvido gcalda grahamc iris_2001 lpfernandes Evangelia cdeane shung phoenixzxl stefanoallesina GeneGo kdl
  • Unequal evolutionary conservation of human protein interactions in interologous networks
    Genome Biology, Vol. 8 (29 May 2007), R95.
    by Kevin R Brown, Igor Jurisica
    posted to evolution interologs ppi by winterschlaefer on 2007-08-24 11:21:34 as ** along with 2 people and 1 group grahamc zwang ParkinsonLab_at_MaRS
  • A network of protein-protein interactions in yeast.
    Nat Biotechnol, Vol. 18, No. 12. (December 2000), pp. 1257-1261.
    by B Schwikowski, P Uetz, S Fields
    posted to high-throughput ppi yeast by winterschlaefer on 2007-08-27 10:51:26 as ** along with 4 people carlk dragonrez ichbins81 jiny
  • Principles of Protein-Protein Interactions: What are the Preferred Ways For Proteins To Interact?
    Chem. Rev. (21 March 2008)
    by O Keskin, A Gursoy, B Ma, R Nussinov
    posted to ppi by winterschlaefer on 2008-05-09 12:32:53 as ** along with 5 people and 1 group kintoki higueruelo GermanErlenkamp allmensch jmrivort Supramolecular
  • Coverage and error models of protein-protein interaction data by directed graph analysis
    Genome Biology, Vol. 8 (10 September 2007), R186.
    by Tony Chiang, Denise Scholtens, Deepayan Sarkar, Robert Gentleman, Wolfgang Huber
    posted to error ppi by winterschlaefer on 2007-09-18 10:33:02 as ** along with 5 people Yanno jfr chad_davis grahamc Pao-Yang
  • Localization of protein-binding sites within families of proteins.
    Protein Sci, Vol. 14, No. 9. (September 2005), pp. 2350-2360.
    by D Korkin, FP Davis, A Sali
    posted to scop ppi by wilbur on 2008-05-16 10:19:45 as ** along with 5 people and 4 groups barry tjimenez bicko chad_davis marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Predicting protein--protein interactions from primary structure.
    Bioinformatics, Vol. 17, No. 5. (May 2001), pp. 455-460.
    by JR Bock, DA Gough
    posted to structure ppi by wilbur on 2008-04-28 08:29:54 as ** along with 5 people iris_2001 maryee leelarcombe cjeans Evangelia
  • Development of unified statistical potentials describing protein-protein interactions.
    Biophys J, Vol. 84, No. 3. (March 2003), pp. 1895-1901.
    by H Lu, L Lu, J Skolnick
    posted to usp ppi by wilbur on 2008-04-28 08:28:32 as ** along with 6 people kgutwin iris_2001 mdimmic chad_davis cjeans selrac
  • ProteomicsProtein complexes take the bait
    Nature, Vol. 415, No. 6868. (10 January 2002), pp. 123-124.
    by Anuj Kumar, Michael Snyder
    posted to ppi by wilbur on 2008-04-21 14:50:59 as read along with 2 people and 1 group marcio lfriedl kdl
  • Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets
    Nature Genetics, Vol. 38, No. 3. (24 February 2006), pp. 285-293.
    by TKB Gandhi, Jun Zhong, Suresh Mathivanan, L Karthick, KN Chandrika, Sujatha S Mohan, Salil Sharma, Stefan Pinkert, Shilpa Nagaraju, Balamurugan Periaswamy, Goparani Mishra, Kannabiran Nandakumar, Beiyi Shen, Nandan Deshpande, Rashmi Nayak, Malabika Sarker, Jef D Boeke, Giovanni Parmigiani, Jörg Schultz, Joel S Bader, Akhilesh Pandey
    posted to comparative domain_interaction human ppi by tny on 2006-02-28 07:39:35 as ** along with 11 people and 2 groups TheresaNiederberger cerca carlk balajis indigoviolet spavey cjeans alwinpremanand dejori Pao-Yang pmendes EisenLab FAB-lab
  • Discovering functional interaction patterns in protein-protein interaction networks
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Mehmet Turanalp, Tolga Can
    posted to ppi network mining graph frequent bioinfpdl by Tingting on 2008-06-12 06:38:45 as **** along with 3 people and 1 group aprildh31 maralena renatomilani Proteasome
  • Functional centrality: detecting lethality of proteins in protein interaction networks.
    Genome informatics. International Conference on Genome Informatics, Vol. 19 (2007), pp. 166-177.
    by KL Tew, XL Li, SH Tan
    posted to ppi by Takayuki on 2008-06-15 10:15:58 as ***
  • Comparative assessment of large-scale data sets of protein-protein interactions.
    Nature, Vol. 417, No. 6887. (23 May 2002), pp. 399-403.
    by C von Mering, R Krause, B Snel, M Cornell, SG Oliver, S Fields, P Bork
    posted to ppi systems_biology by shikin on 2008-04-17 12:38:49 as ** along with 21 people and 6 groups ethkim cerca carlk camster barry dragonrez bicko lfriedl chad_davis alexg j3xucite bundschu yeastyboy ruvido raiyar grahamc iris_2001 cmor shu Evangelia Pao-Yang dbk-lab structural_bioinformatics kdl Bioinformatics generif_paper GeneGo
  • Protein interactions: two methods for assessment of the reliability of high throughput observations.
    Mol Cell Proteomics, Vol. 1, No. 5. (May 2002), pp. 349-356.
    by CM Deane, Ł Salwiński, I Xenarios, D Eisenberg
    posted to network ppi systems_biology by shikin on 2008-04-17 14:59:39 as ** along with 10 people and 1 group chasmand ras tmmurali lfriedl bluto henschel ruvido iris_2001 cdeane Pao-Yang kdl
  • How complete are current yeast and human protein-interaction networks?
    Genome Biology, Vol. 7 (01 December 2006), 120.
    by Traver G Hart, Arun K Ramani, Edward M Marcotte
    posted to network ppi systems_biology by shikin on 2008-04-17 14:25:58 as ** along with 4 people and 1 group phoenixzxl carlk eukfn Pao-Yang GeneGo
  • A comprehensive two-hybrid analysis to explore the yeast protein interactome.
    Proc Natl Acad Sci U S A, Vol. 98, No. 8. (10 April 2001), pp. 4569-4574.
    by T Ito, T Chiba, R Ozawa, M Yoshida, M Hattori, Y Sakaki
    posted to ppi systems_biology by shikin on 2008-04-17 18:35:59 as ** along with 14 people and 2 groups carlk csanford adiel dragonrez okarsligil lfriedl chad_davis balajis nuke2005 kengg ruvido gcalda lpfernandes hplatero kdl Bioinformatics
  • Profile of the Polish poultry industry
    World's Poultry Science Journal, Vol. 61, No. 4. (December 2005), pp. 694-694.
    by J Sobczak, A Nowak
    posted to ppi by sauerkraut on 2008-07-26 10:41:01 as **
  • A text-mining perspective on the requirements for electronically annotated abstracts.
    FEBS letters, Vol. 582, No. 8. (9 April 2008), pp. 1178-1181.
    by F Leitner, A Valencia
    posted to textmining ppi bionlp biocreative annotation by satre on 2008-07-22 16:27:49 as *** along with 2 people ianturton jyuh
  • Extracting Protein-Protein Interactions from the Literature Using the Hidden Vector State Model
    Computational Science – ICCS 2006 (2006), pp. 718-725.
    by Deyu Zhou, Yulan He, Chee Kwoh
    posted to textmining svm ppi bionlp by satre on 2008-07-22 03:07:27 as ***
  • Extracting Protein-Protein Interaction Information from Biomedical Text with SVM
    IEICE - Trans. Inf. Syst., Vol. E89-D, No. 8. (2006), pp. 2464-2466.
    by Tomohiro Mitsumori, Masaki Murata, Yasushi Fukuda, Kouichi Doi, Hirohumi Doi
    posted to textmining svm ppi bionlp by satre on 2008-07-22 03:03:44 as **
  • RelExRelation extraction using dependency parse trees
    Bioinformatics, Vol. 23, No. 3. (1 February 2007), pp. 365-371.
    by Fundel, Katrin, Kuffner, Robert, Zimmer, Ralf
    posted to textmining ppi parsing bionlp by satre on 2008-07-19 07:12:54 as ** along with 5 people gilesc TheresaNiederberger chad_davis bhaddow vlachmore
  • Learning Relations from Biomedical Corpora Using Dependency Trees
    Knowledge Discovery and Emergent Complexity in Bioinformatics (2007), pp. 61-80.
    by Sophia Katrenko, Pieter Adriaans
    posted to textmining ppi bionlp aimed by satre on 2008-07-19 07:01:10 as read
  • Identifying the Interaction between Genes and Gene Products Based on Frequently Seen Verbs in Medline Abstracts.
    Genome informatics. Workshop on Genome Informatics, Vol. 9 (1998), pp. 62-71.
    by T Sekimizu, HS Park, J Tsujii
    posted to textmining rulebased ppi parsing bionlp by satre on 2008-07-22 08:25:43 as **
  • ALIBABA: PubMed as a graph
    Bioinformatics, Vol. 22, No. 19. (1 October 2006), pp. 2444-2445.
    by Conrad Plake, Torsten Schiemann, Marcus Pankalla, Jorg Hakenberg, Ulf Leser
    posted to textmining ppi bionlp by satre on 2008-07-22 22:43:17 as ** along with 5 people and 2 groups jyuh ianturton avivagabriel dagmar A_Hoogendam dIEMoSIRIS compneur
  • Extracting Protein-Protein Interactions from MEDLINE using the Hidden Vector State model.
    International journal of bioinformatics research and applications, Vol. 4, No. 1. (2008), pp. 64-80.
    by D Zhou, Y He, CK Kwoh
    posted to textmining svm ppi bionlp by satre on 2008-07-22 07:58:17 as **
  • Finding the evidence for protein-protein interactions from PubMed abstracts.
    Bioinformatics, Vol. 22, No. 14. (15 July 2006)
    by H Jang, J Lim, JH Lim, SJ Park, KC Lee, SH Park
    posted to ppi ner bionlp by satre on 2008-07-22 22:30:50 as ** along with 1 person jyuh
  • New challenges for text mining: mapping between text and manually curated pathways.
    BMC bioinformatics, Vol. 9 Suppl 3 (2008)
    by K Oda, JD Kim, T Ohta, D Okanohara, T Matsuzaki, Y Tateisi, J Tsujii
    posted to textmining ppi pathtext bionlp by satre on 2008-07-19 04:18:01 as read along with 2 people maralena mariakmejia
  • OpenDMAP: An open-source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-specific gene expression
    BMC Bioinformatics, Vol. 9 (31 January 2008), 78.
    by Lawrence Hunter, Zhiyong Lu, James Firby, William A Baumgartner, Helen L Johnson, Philip V Ogren, Bretonnel K Cohen
    posted to uima textmining ppi ner bionlp biocreative by satre on 2008-07-22 14:54:31 as ** along with 4 people and 1 group yas jyuh sobolevnrm thomaskelder baker-group
  • Discovering patterns to extract protein-protein interactions from the literature: Part II.
    Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3294-3300.
    by Y Hao, X Zhu, M Huang, M Li
    posted to textmining ppi parsing corpus bionlp biocreative by satre on 2008-07-22 22:21:54 as *** along with 2 people davidandrzej natsu
  • PIE: an online prediction system for protein-protein interactions from text
    Nucl. Acids Res. (28 May 2008), gkn281.
    by Sun Kim, Soo-Yong Shin, In-Hee Lee, Soo-Jin Kim, Ram Sriram, Byoung-Tak Zhang
    posted to textmining ppi bionlp by satre on 2008-07-22 14:40:56 as ** along with 3 people jyuh tharris neils
  • Detecting gene relations from Medline abstracts.
    Pac Symp Biocomput (2001), pp. 483-495.
    by M Stephens, M Palakal, S Mukhopadhyay, R Raje, J Mostafa
    posted to textmining ppi ner bionlp by satre on 2008-07-22 21:53:55 as ** along with 1 person and 1 group yas T_lab
  • Literature mining for the biologist: from information retrieval to biological discovery
    Nature Reviews Genetics, Vol. 7, No. 2. (2006), pp. 119-129.
    by Lars J Jensen, Jasmin Saric, Peer Bork
    posted to system-biology survey review ppi pathway nlp ner bionlp annotation by satre on 2008-07-27 14:17:17 as ** along with 25 people and 3 groups ibuch akastrin skumagai TheresaNiederberger Enro jyuh kuhn yas dullhunk hpiwowar dgront caporaso zlu jacky957 lynnefox jdiggans cjeans ghattem michaelmampaey dejori jandot mircea farzanehs larsjuhljensen adoms T_lab biomedical-nlp ADMiRes
  • Discovery of protein-protein interactions using a combination of linguistic, statistical and graphical information.
    BMC Bioinformatics, Vol. 6, No. 1. (7 June 2005)
    by James W Cooper, Aaron Kershenbaum
    posted to textmining svm rulebased ppi ibm bionlp by satre on 2008-07-22 12:46:44 as *** along with 3 people snuppepuppan pggm chad_davis
  • PreBIND and Textomy--mining the biomedical literature for protein-protein interactions using a support vector machine.
    BMC Bioinformatics, Vol. 4 (27 March 2003)
    by I Donaldson, J Martin, B de Bruijn, C Wolting, V Lay, B Tuekam, S Zhang, B Baskin, GD Bader, K Michalickova, T Pawson, CW Hogue
    posted to ui-system svm ppi bionlp by satre on 2008-07-18 17:52:28 as *** along with 2 people chad_davis blackbart
  • Toward Routine Automatic Pathway Discovery from On-line Scientific Text Abstracts.
    Genome informatics. Workshop on Genome Informatics, Vol. 10 (1999), pp. 104-112.
    by SK Ng, M Wong
    posted to ui-system textmining ppi pathtext ner dictionary bionlp by satre on 2008-07-21 15:09:46 as read
  • Assisted curation: does text mining really help?
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 556-567.
    by B Alex, C Grover, B Haddow, M Kabadjov, E Klein, M Matthews, S Roebuck, R Tobin, X Wang
    posted to ppi ner bionlp by satre on 2008-07-20 11:40:07 as *** along with 1 person and 1 group henk-cul dbmi-nlp
  • Automatic extraction of biological information from scientific text: protein-protein interactions.
    Proc Int Conf Intell Syst Mol Biol (1999), pp. 60-67.
    by C Blaschke, MA Andrade, C Ouzounis, A Valencia
    posted to textmining ppi ner bionlp by satre on 2008-07-22 11:57:46 as *** along with 6 people and 3 groups TheresaNiederberger Enro miguel yas helliontroy bundschu T_lab biomedical-nlp generif_paper
  • Developing a Robust Part-of-Speech Tagger for Biomedical Text
    Advances in Informatics (2005), pp. 382-392.
    by Yoshimasa Tsuruoka, Yuka Tateishi, Jin-Dong Kim, Tomoko Ohta, John Mcnaught, Sophia Ananiadou, Jun’ichi Tsujii
    posted to textmining ppi parsing ner maximum-entropy-modeling bionlp by satre on 2008-07-26 14:21:22 as **
  • APID: Agile Protein Interaction DataAnalyzer.
    Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006)
    by C Prieto, J De Las Rivas
    posted to ui-system ppi database bionlp by satre on 2008-07-26 14:17:43 as **
  • BIND--The Biomolecular Interaction Network Database.
    Nucleic Acids Res, Vol. 29, No. 1. (1 January 2001), pp. 242-245.
    by GD Bader, I Donaldson, C Wolting, BF Ouellette, T Pawson, CW Hogue
    posted to ppi pathway ner database by satre on 2008-07-26 13:52:22 as *** along with 4 people carlk wnpx blackbart ruvido
  • Extracting human protein interactions from MEDLINE using a full-sentence parser.
    Bioinformatics, Vol. 20, No. 5. (22 March 2004), pp. 604-611.
    by N Daraselia, A Yuryev, S Egorov, S Novichkova, A Nikitin, I Mazo
    posted to textmining ppi parsing bionlp by satre on 2008-07-22 18:59:46 as *** along with 5 people and 1 group irenas Enro miguel natsu zlu dbk-lab
  • Mining MEDLINE: abstracts, sentences, or phrases?
    Pac Symp Biocomput (2002), pp. 326-337.
    by J Ding, D Berleant, D Nettleton, E Wurtele
    posted to textmining ppi informationextraction bionlp annotation by satre on 2008-07-24 14:39:52 as ** along with 4 people and 2 groups ianturton yas zlu bundschu T_lab generif_paper
  • Manual curation is not sufficient for annotation of genomic databases
    Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i41-48.
    by William A Baumgartner, Bretonnel K Cohen, Lynne M Fox, George Acquaah-Mensah, Lawrence Hunter
    posted to ppi database annotation by satre on 2008-07-24 14:31:21 as ** along with 1 person sgoetz
  • IntAct: an open source molecular interaction database.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by H Hermjakob, L Montecchi-Palazzi, C Lewington, S Mudali, S Kerrien, S Orchard, M Vingron, B Roechert, P Roepstorff, A Valencia, H Margalit, J Armstrong, A Bairoch, G Cesareni, D Sherman, R Apweiler
    posted to ppi annotation by satre on 2008-07-24 14:25:19 as *** along with 7 people and 1 group jeremymiller irenas fisherp frohike grahamc lpfernandes wilbur dbk-lab
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