Registrer deg | Logg på | FAQ      [?] 

Nøkkelord: tandem-mass-spectrometry [154 articles]

Nye artikler klassifisert med nøkkelordet tandem-mass-spectrometry.
  • Generating Peptide Candidates from Amino-Acid Sequence Databases for Protein Identification via Mass Spectrometry
    Algorithms in Bioinformatics: Second International Workshop, WABI 2002, Rome, Italy, September 17-21, 2002. Proceedings (2002), pp. 68-81.
    by Nathan Edwards, Ross Lippert
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-12-10 16:29:41 as **
  • PepNovo: De Novo Peptide Sequencing via Probabilistic Network Modeling
    Anal. Chem., Vol. 77, No. 4. (15 February 2005), pp. 964-973.
    by A Frank, P Pevzner
    posted to denovo-interpretation peptide-identification peptide-spectrum-score proteomics tandem-mass-spectrometry by nedwards on 2007-11-07 21:13:46 as **
  • Mass spectrometry allows direct identification of proteins in large genomes.
    Proteomics, Vol. 1, No. 5. (May 2001), pp. 641-650.
    by B Küster, P Mortensen, JS Andersen, M Mann
    posted to genome-annotation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-14 16:08:02 as **
  • Prediction of Error Associated with False-Positive Rate Determination for Peptide Identification in Large-Scale Proteomics Experiments Using a Combined Reverse and Forward Peptide Sequence Database Strategy
    J. Proteome Res., Vol. 6, No. 1. (5 January 2007), pp. 392-398.
    by EL Huttlin, AD Hegeman, AC Harms, MR Sussman
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-11 18:51:56 as **
  • Improving gene annotation using peptide mass spectrometry
    Genome Res., Vol. 17, No. 2. (1 February 2007), pp. 231-239.
    by Stephen Tanner, Zhouxin Shen, Julio Ng, Liliana Florea, Roderic Guigo, Steven P Briggs, Vineet Bafna
    posted to genome-annotation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-07 15:33:42 as *** along with 2 people and 1 group brant wenhan EisenLab
  • SPIDER: software for protein identification from sequence tags with de novo sequencing error.
    J Bioinform Comput Biol, Vol. 3, No. 3. (June 2005), pp. 697-716.
    by Y Han, B Ma, K Zhang
    posted to denovo-interpretation peptide-identification proteomics proteomics-software tandem-mass-spectrometry by nedwards on 2007-08-09 15:33:42 as **
  • On de novo interpretation of tandem mass spectra for peptide identification
    (2003), pp. 9-18.
    by Vineet Bafna, Nathan Edwards
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-09 15:16:37 as **
  • MyriMatch: Highly Accurate Tandem Mass Spectral Peptide Identification by Multivariate Hypergeometric Analysis
    J. Proteome Res., Vol. 6, No. 2. (2 February 2007), pp. 654-661.
    by DL Tabb, CG Fernando, MC Chambers
    posted to peptide-identification proteomics proteomics-software tandem-mass-spectrometry by nedwards on 2007-08-08 20:08:31 as ** along with 1 person jyuh
  • Method To Compare Collision-Induced Dissociation Spectra of Peptides: Potential for Library Searching and Subtractive Analysis
    Anal. Chem., Vol. 70, No. 17. (1 September 1998), pp. 3557-3565.
    by JR Yates, SF Morgan, CL Gatlin, PR Griffin, JK Eng
    posted to peptide-identification proteomics spectral-matching tandem-mass-spectrometry by nedwards on 2007-08-08 20:20:03 as **
  • A dynamic programming approach to de novo peptide sequencing via tandem mass spectrometry
    (2000), pp. 389-398.
    by Ting Chen, Ming-Yang Kao, Matthew Tepel, John Rush, George M Church
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 20:36:21 as ** along with 1 person antoniochiao
  • Sequence optimization as an alternative to de novo analysis of tandem mass spectrometry data.
    Bioinformatics, Vol. 20, No. 14. (22 September 2004), pp. 2296-2304.
    by A Heredia-Langner, WR Cannon, KD Jarman, KH Jarman
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:36:44 as **
  • Improved classification of mass spectrometry database search results using newer machine learning approaches.
    Mol Cell Proteomics, Vol. 5, No. 3. (March 2006), pp. 497-509.
    by PJ Ulintz, J Zhu, ZS Qin, PC Andrews
    posted to machine-learning peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-08-08 15:17:26 as ** along with 1 person mass
  • Calibrating E-values for MS2 database search methods
    Biology Direct, Vol. 2 (05 November 2007), 26.
    by Gelio Alves, Aleksey Y Ogurtsov, Wells W Wu, Guanghui Wang, Rong-Fong Shen, Yi-Kuo Yu
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-04-02 19:37:35 as ** along with 1 person brianb
  • Searching sequence databases via de novo peptide sequencing by tandem mass spectrometry.
    Mol Biotechnol, Vol. 22, No. 3. (November 2002), pp. 301-315.
    by RS Johnson, JA Taylor
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:37:05 as **
  • Empirical Statistical Model To Estimate the Accuracy of Peptide Identifications Made by MS/MS and Database Search
    Anal. Chem., Vol. 74, No. 20. (15 October 2002), pp. 5383-5392.
    by A Keller, AI Nesvizhskii, E Kolker, R Aebersold
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-09-19 18:47:39 as **
  • A model for random sampling and estimation of relative protein abundance in shotgun proteomics.
    Anal Chem, Vol. 76, No. 14. (15 July 2004), pp. 4193-4201.
    by H Liu, RG Sadygov, JR Yates
    posted to peptide-identification peptide-identification-statistics protein-quantitation proteomics tandem-mass-spectrometry by nedwards on 2007-08-20 17:35:14 as ** along with 1 person kentsis
  • Achieving in-depth proteomics profiling by mass spectrometry.
    ACS Chem Biol, Vol. 2, No. 1. (23 January 2007), pp. 39-52.
    by NG Ahn, JB Shabb, WM Old, KA Resing
    posted to mass-spectrometry peptide-identification protein-quantitation proteomics tandem-mass-spectrometry by nedwards on 2007-09-05 16:05:40 as ** along with 1 person jyuh
  • Nonlinear Fitting Method for Determining Local False Discovery Rates from Decoy Database Searches
    J. Proteome Res. (14 August 2008)
    by Wilfred H Tang, Ignat V Shilov, Sean L Seymour
    posted to tandem-mass-spectrometry proteomics peptide-identification-statistics peptide-identification by nedwards on 2008-10-03 16:58:55 as ** along with 1 person brianb
  • Comprehensive yeast proteome analysis using a capillary isoelectric focusing-based multidimensional separation platform coupled with ESI-MS/MS
    PROTEOMICS, Vol. 7, No. 8. (2007), pp. 1178-1187.
    by Weijie Wang, Tong Guo, Tao Song, Cheng S Lee, Brian M Balgley
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-09-13 20:29:28 as **
  • Intensity-Based Statistical Scorer for Tandem Mass Spectrometry
    Anal. Chem., Vol. 75, No. 3. (1 February 2003), pp. 435-444.
    by M Havilio, Y Haddad, Z Smilansky
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:37:53 as **
  • Artificial Neural Network Analysis for Evaluation of Peptide MS/MS Spectra in Proteomics
    Anal. Chem., Vol. 76, No. 6. (15 March 2004), pp. 1726-1732.
    by T Baczek, A Bucinski, AR Ivanov, R Kaliszan
    posted to machine-learning peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-09-20 18:12:53 as **
  • Top down mass spectrometry of < 60-kDa proteins from Methanosarcina acetivorans using quadrupole FRMS with automated octopole collisionally activated dissociation.
    Molecular & cellular proteomics : MCP, Vol. 5, No. 1. (January 2006), pp. 14-25.
    by SM Patrie, JT Ferguson, DE Robinson, D Whipple, M Rother, WW Metcalf, NL Kelleher
    posted to top-down tandem-mass-spectrometry proteomics by nedwards on 2008-10-07 18:30:37 as **
  • Analysis of human liver proteome using replicate shotgun strategy
    PROTEOMICS, Vol. 7, No. 14. (2007), pp. 2479-2488.
    by Ming Chen, Wantao Ying, Yanping Song, Xin Liu, Bing Yang, Songfeng Wu, Ying Jiang, Yun Cai, Fuchu He, Xiaohong Qian
    posted to proteomics proteomics-projects tandem-mass-spectrometry by nedwards on 2007-08-27 19:05:13 as **
  • Online Microwave D-Cleavage LC-ESI-MS/MS of Intact Proteins: Site-Specific Cleavages at Aspartic Acid Residues and Disulfide Bonds
    J. Proteome Res., Vol. 7, No. 3. (7 March 2008), pp. 1012-1026.
    by Nicolas J Hauser, Franco Basile
    posted to acid-cleavage proteomics tandem-mass-spectrometry by nedwards on 2008-03-24 18:44:55 as **
  • A suboptimal algorithm for de novo peptide sequencing via tandem mass spectrometry.
    J Comput Biol, Vol. 10, No. 1. (2003), pp. 1-12.
    by B Lu, T Chen
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:22:07 as **
  • DirecTag: Accurate Sequence Tags from Peptide MS/MS through Statistical Scoring
    J. Proteome Res. (17 July 2008)
    by David L Tabb, Ze-Qiang Ma, Daniel B Martin, Amy-Joan L Ham, Matthew C Chambers
    posted to tandem-mass-spectrometry proteomics peptide-identification by nedwards on 2008-10-03 17:02:05 as ** along with 1 person brianb
  • Development and validation of a spectral library searching method for peptide identification from MS/MS.
    Proteomics, Vol. 7, No. 5. (March 2007), pp. 655-667.
    by H Lam, EW Deutsch, JS Eddes, JK Eng, N King, SE Stein, R Aebersold
    posted to peptide-identification proteomics spectral-matching tandem-mass-spectrometry by nedwards on 2007-08-08 15:11:42 as ** along with 3 people jyuh fishtank olberd
  • General framework for developing and evaluating database scoring algorithms using the TANDEM search engine.
    Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2830-2832.
    by B MacLean, JK Eng, RC Beavis, M McIntosh
    posted to peptide-identification proteomics proteomics-software tandem tandem-mass-spectrometry by nedwards on 2007-08-08 15:13:45 as **
  • A novel scoring schema for peptide identification by searching protein sequence databases using tandem mass spectrometry data.
    BMC Bioinformatics, Vol. 7 (2006)
    by Z Zhang, S Sun, X Zhu, S Chang, X Liu, C Yu, D Bu, R Chen
    posted to peptide-identification peptide-spectrum-score proteomics tandem-mass-spectrometry by nedwards on 2007-08-09 15:27:22 as **
  • Estimating the Statistical Significance of Peptide Identifications from Shotgun Proteomics Experiments
    J. Proteome Res., Vol. 6, No. 5. (4 May 2007), pp. 1758-1767.
    by RE Higgs, MD Knierman, A Bonnerfreeman, LM Gelbert, ST Patil, JE Hale
    posted to machine-learning peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-09-04 18:56:09 as **
  • De novo analysis of peptide tandem mass spectra by spectral graph partitioning.
    J Comput Biol, Vol. 13, No. 2. (March 2006), pp. 364-378.
    by M Bern, D Goldberg
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:24:27 as **
  • De Novo Peptide Identification via Tandem Mass Spectrometry and Integer Linear Optimization
    Anal. Chem., Vol. 79, No. 4. (15 February 2007), pp. 1433-1446.
    by PA Dimaggio, CA Floudas
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-01-03 21:02:10 as **
  • Robust accurate identification of peptides (RAId): deciphering MS2 data using a structured library search with de novo based statistics.
    Bioinformatics, Vol. 21, No. 19. (1 October 2005), pp. 3726-3732.
    by G Alves, YK Yu
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:36:24 as **
  • TANDEM: matching proteins with tandem mass spectra.
    Bioinformatics, Vol. 20, No. 9. (12 June 2004), pp. 1466-1467.
    by R Craig, RC Beavis
    posted to peptide-identification proteomics proteomics-software tandem tandem-mass-spectrometry by nedwards on 2007-08-08 15:14:42 as **
  • Decoding protein modifications using top-down mass spectrometry
    Nat Meth, Vol. 4, No. 10. (October 2007), pp. 817-821.
    by Nertila Siuti, Neil L Kelleher
    posted to top-down tandem-mass-spectrometry proteomics by nedwards on 2008-10-07 18:23:26 as ** along with 1 person jyuh
  • Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry
    Genome Biology, Vol. 6, No. 1. (2004)
    by Frank Desiere, Eric Deutsch, Alexey Nesvizhskii, Parag Mallick, Nichole King, Jimmy Eng, Alan Aderem, Rose Boyle, Erich Brunner, Samuel Donohoe, Nelson Fausto, Ernst Hafen, Lee Hood, Michael Katze, Kathleen Kennedy, Floyd Kregenow, Hookeun Lee, Biaoyang Lin, Dan Martin, Jeffrey Ranish, David Rawlings, Lawrence Samelson, Yuzuru Shiio, Julian Watts, Bernd Wollscheid, Michael Wright, Wei Yan, Lihong Yang, Eugene Yi, Hui Zhang, Ruedi Aebersold
    posted to genome-annotation peptide-atlas peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-08 13:40:47 as **
  • ProSight PTM 2.0: improved protein identification and characterization for top down mass spectrometry.
    Nucleic acids research, Vol. 35, No. Web Server issue. (July 2007)
    by L Zamdborg, RD LeDuc, KJ Glowacz, YB Kim, V Viswanathan, IT Spaulding, BP Early, EJ Bluhm, S Babai, NL Kelleher
    posted to top-down tandem-mass-spectrometry proteomics by nedwards on 2008-10-07 18:30:07 as **
  • Semi-supervised learning for peptide identification from shotgun proteomics datasets
    Nature Methods, Vol. 4, No. 11. (21 October 2007), pp. 923-925.
    by Lukas Käll, Jesse D Canterbury, Jason Weston, William S Noble, Michael J Maccoss
    posted to machine-learning peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-01-31 20:55:27 as ** along with 1 person tmmurali
  • How Much Peptide Sequence Information Is Contained in Ion Trap Tandem Mass Spectra?
    Journal of the American Society for Mass Spectrometry (7 August 2008)
    by Jürgen Cox, Nina C C Hubner, Matthias Mann
    posted to tandem-mass-spectrometry proteomics peptide-identification by nedwards on 2008-10-03 16:49:44 as ** along with 1 person brianb
  • A hypergeometric probability model for protein identification and validation using tandem mass spectral data and protein sequence databases.
    Anal Chem, Vol. 75, No. 15. (1 August 2003), pp. 3792-3798.
    by RG Sadygov, JR Yates
    posted to peptide-identification-statistics protein-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-08 14:00:03 as **
  • Analysis and validation of proteomic data generated by tandem mass spectrometry
    Nat Meth, Vol. 4, No. 10. (October 2007), pp. 787-797.
    by Alexey Nesvizhskii, Olga Vitek, Ruedi Aebersold
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-11-07 16:03:29 as ** along with 2 people jyuh fishtank
  • Exploring the Precursor Ion Exclusion Feature of Liquid Chromatography&#x2212;Electrospray Ionization Quadrupole Time-of-Flight Mass Spectrometry for Improving Protein Identification in Shotgun Proteome Analysis
    Anal. Chem., Vol. 80, No. 12. (15 June 2008), pp. 4696-4710.
    by Nan Wang, Liang Li
    posted to dynamic-exclusion proteomics tandem-mass-spectrometry by nedwards on 2008-07-03 21:08:53 as **
  • Semisupervised model-based validation of Peptide identifications in mass spectrometry-based proteomics.
    J Proteome Res, Vol. 7, No. 1. (January 2008), pp. 254-265.
    by H Choi, AI Nesvizhskii
    posted to machine-learning peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-02-01 18:47:35 as ** along with 1 person jyuh
  • A New Algorithm for the Evaluation of Shotgun Peptide Sequencing in Proteomics: Support Vector Machine Classification of Peptide MS/MS Spectra and SEQUEST Scores
    J. Proteome Res., Vol. 2, No. 2. (1 April 2003), pp. 137-146.
    by DC Anderson, W Li, DG Payan, WS Noble
    posted to machine-learning peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-08-08 16:06:11 as **
  • Improving Protein Identification Sensitivity by Combining MS and MS/MS Information for Shotgun Proteomics Using LTQ-Orbitrap High Mass Accuracy Data
    Anal. Chem., Vol. 80, No. 6. (15 March 2008), pp. 2018-2025.
    by B Lu, A Motoyama, C Ruse, J Venable, JR Yates
    posted to tandem-mass-spectrometry proteomics peptide-identification high-accuracy by nedwards on 2008-10-03 17:15:12 as ** along with 1 person brianb
  • Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
    Nature Methods, Vol. 4, No. 3. (27 February 2007), pp. 207-214.
    by Joshua E Elias, Steven P Gygi
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-08 13:33:24 as ** along with 1 person csardas
  • NovoHMM: A Hidden Markov Model for de Novo Peptide Sequencing
    Anal. Chem., Vol. 77, No. 22. (15 November 2005), pp. 7265-7273.
    by B Fischer, V Roth, F Roos, J Grossmann, S Baginsky, P Widmayer, W Gruissem, JM Buhmann
    posted to denovo-interpretation hidden-markov-models peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-08 15:54:19 as **
  • Genome annotation of Anopheles gambiae using mass spectrometry-derived data.
    BMC Genomics, Vol. 6 (2005)
    by DE Kalume, S Peri, R Reddy, J Zhong, M Okulate, N Kumar, A Pandey
    posted to genome-annotation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-08 14:08:37 as **
  • A fast coarse filtering method for peptide identification by mass spectrometry
    Bioinformatics, Vol. 22, No. 12. (15 June 2006), pp. 1524-1531.
    by Smriti R Ramakrishnan, Rui Mao, Aleksey A Nakorchevskiy, John T Prince, Willard S Willard, Weijia Xu, Edward M Marcotte, Daniel P Miranker
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-09-05 16:13:35 as **
  • PepNovo: de novo peptide sequencing via probabilistic network modeling.
    Anal Chem, Vol. 77, No. 4. (15 February 2005), pp. 964-973.
    by A Frank, P Pevzner
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:20:54 as **
    • NB: Du kan sitere denne siden som: http://www.citeulike.org/tag/tandem-mass-spectrometry

    Result page: 1 2 3 4 Next RIS BibTeX
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.