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RamuAnandakrishnans genome [43 articles]

Artikler nylig sendt til RamuAnandakrishnans bibliotek klassifisert med nøkkelordet genome. You can also see everyone's genome.
  • Use and misuse of the gene ontology annotations.
    Nature reviews. Genetics (13 May 2008)
    by Seung Yon Rhee, Valerie Wood, Kara Dolinski, Sorin Draghici
    posted to genome by RamuAnandakrishnan on 2008-06-18 12:34:50 as ** along with 21 people and 2 groups jfr djkt jyuh aheilbut mariakmejia cmzmasek A_Olympia realzhang carlk roys gjuggler fpattyn ptrobajo giovenko cabbagesofdoom tmmurali renatomilani capitall marck rvosa bpcusack logics of knowledge FAB-lab
  • Improved Detection of Overrepresentation of Gene-Ontology Annotations with Parent-Child Analysis.
    Bioinformatics (11 September 2007)
    by Steffen Grossmann, Sebastian Bauer, Peter N N Robinson, Martin Vingron
    posted to evolution genome by RamuAnandakrishnan on 2008-05-05 20:35:38 as ** along with 6 people dandaman tmmurali sgoetz grahamc heliopais marck
  • A general method applicable to the search for similarities in the amino acid sequence of two proteins
    Journal of Molecular Biology, Vol. 48, No. 3. (28 March 1970), pp. 443-453.
    by Saul B Needleman, Christian D Wunsch
    posted to evolution genome by RamuAnandakrishnan on 2008-05-05 15:17:53 as ** along with 3 people BioNica adijr granujilla
  • Scheffe's More Powerful F-Protected Post Hoc Procedure
    Journal of Educational and Behavioral Statistics, Vol. 25, No. 1. (2000), pp. 13-19.
    by Alan J Klockars, Gregory R Hancock
    posted to evolution genome statistics by RamuAnandakrishnan on 2008-04-29 20:45:51 as **
  • Why highly expressed proteins evolve slowly.
    Proc Natl Acad Sci U S A (21 September 2005)
    by D Allan A Drummond, Jesse D D Bloom, Christoph Adami, Claus O O Wilke, Frances H H Arnold
    posted to evolution genome by RamuAnandakrishnan on 2008-04-29 18:59:09 as ** along with 14 people and 5 groups rklancer stevanspringer bjorns imouthesmp aprasad dayjm Einat marcius xwbcn penka balabu malcook balicea wilbur structural_bioinformatics Nie FAB-lab BioinfoCIPF SGU-CIPF
  • A Combined Empirical and Mechanistic Codon Model
    Molecular Biology and Evolution, Vol. 24, No. 2. (February 2007), pp. 388-397.
    by Doron-Faigenboim, Adi, Pupko, Tal
    posted to evolution genome by RamuAnandakrishnan on 2008-04-29 17:20:40 as **
  • The correlation between relatives on the supposition of mendelian inheritence
    Transactions of the Royal Society of Edinburgh, Vol. 52 (1918), pp. 399-433.
    by RA Fisher
    posted to evolution general_interest genome by RamuAnandakrishnan on 2008-04-28 19:36:47 as **
  • Evolutionary systems biology: links between gene evolution and function
    Current Opinion in Biotechnology, Vol. 17, No. 5. (October 2006), pp. 481-487.
    by Eugene V Koonin, Yuri Wolf
    posted to ewald genome by RamuAnandakrishnan on 2008-04-28 17:41:20 as ** along with 1 person tny
  • The rates of evolution in some ribosomal components
    Journal of Molecular Evolution, Vol. 9, No. 3. (1977), pp. 191-201.
    by Hiroshi Hori, Ken-Ichi Higo, Syozo Osawa
    posted to evolution genome by RamuAnandakrishnan on 2008-04-28 17:10:40 as **
  • Fluctuating mutation bias and the evolution of base composition in Drosophila.
    Journal of molecular evolution, Vol. 50, No. 1. (January 2000), pp. 1-10.
    by F Rodríguez-Trelles, R Tarrío, FJ Ayala
    posted to evolution genome by RamuAnandakrishnan on 2008-04-28 16:53:07 as **
  • Expected Relationship Between the Silent Substitution Rate and the GC Content: Implications for the Evolution of Isochores
    Journal of Molecular Evolution, Vol. 54, No. 1. (24 January 2002), pp. 129-133.
    by Gwenaël Piganeau, Dominique Mouchiroud, Laurent Duret, Christian Gautier
    posted to evolution genome by RamuAnandakrishnan on 2008-04-28 16:31:00 as **
  • The Covariation Between TpA Deficiency, CpG Deficiency, and G+C Content of Human Isochores Is Due to a Mathematical Artifact
    Mol Biol Evol, Vol. 17, No. 11. (1 November 2000), pp. 1620-1625.
    by Laurent Duret, Nicolas Galtier
    posted to evolution genome by RamuAnandakrishnan on 2008-04-28 16:22:21 as **
  • Population genetics of duplicated disease-defense genes, hm1 and hm2, in maize (Zea mays ssp. mays L.) and its wild ancestor (Zea mays ssp. parviglumis).
    Genetics, Vol. 162, No. 2. (October 2002), pp. 851-860.
    by L Zhang, AS Peek, D Dunams, BS Gaut
    posted to evolution genome by RamuAnandakrishnan on 2008-04-28 15:21:58 as **
  • PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments.
    Nucleic Acids Research, Vol. 34, No. web server issue. (2006), pp. W609-W612.
    by Mikita Suyama, David Torrents, Peer Bork
    posted to evolution genome by RamuAnandakrishnan on 2008-04-28 02:15:38 as **
  • PAML 4: Phylogenetic Analysis by Maximum Likelihood
    Mol Biol Evol (4 May 2007), msm088.
    by Ziheng Yang
    posted to evolution genome by RamuAnandakrishnan on 2008-04-28 01:57:13 as ** along with 9 people and 1 group druvus operon akifumi hdopazo BioNica stajich ryanraaum CharlesM Ema Berkeley Mycology
  • The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant.
    Nucleic Acids Res, Vol. 29, No. 1. (1 January 2001), pp. 102-105.
    by E Huala, AW Dickerman, M Garcia-Hernandez, D Weems, L Reiser, F LaFond, D Hanley, D Kiphart, M Zhuang, W Huang, LA Mueller, D Bhattacharyya, D Bhaya, BW Sobral, W Beavis, DW Meinke, CD Town, C Somerville, SY Rhee
    posted to evolution genome by RamuAnandakrishnan on 2008-04-27 14:23:44 as ** along with 1 person natstreet
  • Chromosomal location effects on gene sequence evolution in mammals
    Vol. 9, pp. 786-791.
    by Giorgio Matassi, Paul M Sharp, Christian Gautier
    posted to evolution genome by RamuAnandakrishnan on 2008-04-27 02:05:51 as **
  • The proteins of linked genes evolve at similar rates
    Nature, Vol. 407 (2000), pp. 900-903.
    by Elizabeth JB Williams, Laurence D Hurst
    posted to evolution genome by RamuAnandakrishnan on 2008-04-27 00:47:56 as **
  • Evolution by gene duplication: an update
    Trends in Ecology & Evolution, Vol. 18, No. 6. (June 2003), pp. 292-298.
    by Jianzhi Zhang
    posted to evolution genome by RamuAnandakrishnan on 2008-04-26 22:50:31 as ** along with 2 people ruvido BioNica
  • Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models.
    Mol Biol Evol, Vol. 17, No. 1. (January 2000), pp. 32-43.
    by Z Yang, R Nielsen
    posted to evolution genome by RamuAnandakrishnan on 2008-04-21 21:50:04 as ** along with 8 people and 1 group bjorns fernan hdopazo BioNica timflutre Garamonfok ankur_iitg Ema BioinfoCIPF
  • Local conservation scores without a priori assumptions on neutral substitution rates
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Janis Dingel, Pavol Hanus, Niccolo Leonardi, Joachim Hagenauer, Juergen Zech, Jakob Mueller
    posted to evolution genome by RamuAnandakrishnan on 2008-04-11 14:25:54 as ** along with 3 people and 2 groups aprasad maximilianh cisevol cis-regulatory-evolution BergmanLab
  • Conditional clustering of temporal expression profiles
    BMC Bioinformatics, Vol. 9 (11 March 2008), 147.
    by Ling Wang, Monty Montano, Matt Rarick, Paola Sebastiani
    posted to evolution genome by RamuAnandakrishnan on 2008-03-12 20:52:05 as ** along with 1 person grahamc
  • GOSim - An R-package for computation of information theoretic GO similarities between terms and gene products
    BMC Bioinformatics, Vol. 8 (22 May 2007), 166.
    by Holger Froehlich, Nora Speer, Annemarie Poustka, Tim Beissbarth
    posted to evolution genome by RamuAnandakrishnan on 2008-03-10 21:46:44 as ** along with 4 people jyuh jfr macavity1g sgoetz
  • External factors accelerate expression divergence between duplicate genes
    Trends in Genetics, Vol. 23, No. 4. (April 2007), pp. 162-166.
    by Misook Ha, Wen-Hsiung Li, Jeffrey Z Chen
    posted to evolution genome by RamuAnandakrishnan on 2008-03-01 14:44:50 as ** along with 2 people echinotrix TaqSys
  • Selective Constraints, Amino Acid Composition, and the Rate of Protein Evolution
    Mol Biol Evol, Vol. 17, No. 4. (1 April 2000), pp. 656-664.
    by Nicolas J Tourasse, Wen-Hsiung Li
    posted to evolution genome by RamuAnandakrishnan on 2008-02-05 20:39:08 as ** along with 3 people and 1 group penka cdeane sebk Nie
  • Substitution rates in alpha-helical transmembrane proteins
    Protein Sci, Vol. 10, No. 12. (1 December 2001), pp. 2507-2517.
    by Timothy J Stevens, Isaiah T Arkin
    posted to evolution genome by RamuAnandakrishnan on 2008-02-05 20:28:58 as **
  • Amino acid substitutions in the human genome: evolutionary implications of single nucleotide polymorphisms
    Gene, Vol. 305, No. 2. (27 February 2003), pp. 167-173.
    by Jacek Majewski, Jurg Ott
    posted to evolution genome by RamuAnandakrishnan on 2008-02-05 20:16:52 as **
  • Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution.
    Plant Cell, Vol. 16, No. 7. (July 2004), pp. 1679-1691.
    by G Blanc, KH Wolfe
    posted to evolution genome by RamuAnandakrishnan on 2008-02-01 17:29:20 as ** along with 4 people and 1 group pansapiens Schmidtc cmm echinotrix FAB-lab
  • Selection and gene duplication: a view from the genome
    Genome Biology, Vol. 3, No. 5. (2002), pp. reviews1012.1-reviews1012.3.
    by Andreas Wagner
    posted to evolution genome by RamuAnandakrishnan on 2008-02-01 16:45:15 as **
  • Mutations of Different Molecular Origins Exhibit Contrasting Patterns of Regional Substitution Rate Variation
    PLoS Computational Biology, Vol. preprint, No. 2008. (1 January 2008), e15.eor.
    by Navin Elango, Seong-Ho Kim, Nisc Program, Eric Vigoda, Soojin V Yi
    posted to evolution genome by RamuAnandakrishnan on 2008-01-31 17:19:23 as ** along with 1 person djkt
  • Mutation rate variation in multicellular eukaryotes: causes and consequences
    Nature Reviews Genetics, Vol. 8, No. 8., pp. 619-631.
    by Charles F Baer, Michael M Miyamoto, Dee R Denver
    posted to evolution genome by RamuAnandakrishnan on 2008-01-27 22:21:34 as ** along with 4 people and 3 groups dchughes cabbagezs bpcusack gwenknight Bioinformatics G4ID Genetics-of-Gambling
  • Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana.
    Mol Biol Evol, Vol. 19, No. 9. (September 2002), pp. 1464-1473.
    by L Zhang, TJ Vision, BS Gaut
    posted to evolution genome by RamuAnandakrishnan on 2008-01-27 21:15:08 as **
  • The pattern of polymorphism in Arabidopsis thaliana.
    PLoS Biol, Vol. 3, No. 7. (July 2005)
    by M Nordborg, TT Hu, Y Ishino, J Jhaveri, C Toomajian, H Zheng, E Bakker, P Calabrese, J Gladstone, R Goyal, M Jakobsson, S Kim, Y Morozov, B Padhukasahasram, V Plagnol, NA Rosenberg, C Shah, JD Wall, J Wang, K Zhao, T Kalbfleisch, V Schulz, M Kreitman, J Bergelson
    posted to evolution genome by RamuAnandakrishnan on 2008-01-27 15:06:06 as ** along with 2 people arve JAShapiro
  • Functional genomic analysis of the rates of protein evolution.
    Proc Natl Acad Sci U S A, Vol. 102, No. 15. (12 April 2005), pp. 5483-5488.
    by DP Wall, AE Hirsh, HB Fraser, J Kumm, G Giaever, MB Eisen, MW Feldman
    posted to evolution genome by RamuAnandakrishnan on 2008-01-26 23:32:01 as ** along with 5 people and 1 group bjorns balajis opheliav penka michaelbarton Nie
  • Evolution of chloroplast mononucleotide microsatellites in Arabidopsis thaliana
    Theoretical and Applied Genetics, Vol. 114, No. 2. (January 2007), pp. 223-235.
    by Jakobsson, Mattias, Sall, Torbjorn, Lind-Hallden, Christina, Hallden, Christer
    posted to evolution genome by RamuAnandakrishnan on 2008-01-26 00:15:37 as **
  • Evolution of the archaeal rhodopsins: evolution rate changes by gene duplication and functional differentiation
    Journal of Molecular Biology, Vol. 285, No. 1. (8 January 1999), pp. 163-174.
    by Kunio Ihara, Tohru Umemura, Izumi Katagiri, Tomomi Kitajima-Ihara, Yasuo Sugiyama, Yoshiaki Kimura, Yasuo Mukohata
    posted to evolution genome by RamuAnandakrishnan on 2008-01-25 18:03:16 as **
  • New resampling method for evaluating stability of clusters
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Irina G Dresen, Tanja Boes, Johannes Huesing, Markus Neuhaeuser, Karl H Joeckel
    posted to genome statistics by RamuAnandakrishnan on 2008-01-24 15:13:25 as ** along with 5 people and 1 group derwisch sobolevnrm jfr jyuh aviad_work baker-group
  • Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome.
    Trends Genet, Vol. 20, No. 10. (October 2004), pp. 461-464.
    by C Seoighe, C Gehring
    posted to evolution genome by RamuAnandakrishnan on 2008-01-23 22:06:03 as ** along with 1 person Schmidtc
  • An analysis of the gene complement of a marsupial, Monodelphis domestica: Evolution of lineage-specific genes and giant chromosomes
    Genome Res., Vol. 17, No. 7. (1 July 2007), pp. 969-981.
    by Leo Goodstadt, Andreas Heger, Caleb Webber, Chris P Ponting
    posted to evolution genome by RamuAnandakrishnan on 2008-01-21 15:24:15 as ** along with 2 people operon djkt
  • Mobile elements: drivers of genome evolution.
    Science, Vol. 303, No. 5664. (12 March 2004), pp. 1626-1632.
    by HH Kazazian
    posted to evolution genome by RamuAnandakrishnan on 2008-01-21 15:14:08 as ** along with 4 people aprasad treangen timflutre yoanjacquemin
  • Emergence of Young Human Genes after a Burst of Retroposition in Primates.
    PLoS Biol, Vol. 3, No. 11. (11 October 2005)
    by Ana Claudia C Marques, Isabelle Dupanloup, Nicolas Vinckenbosch, Alexandre Reymond, Henrik Kaessmann
    posted to evolution genome by RamuAnandakrishnan on 2008-01-21 15:08:17 as ** along with 5 people and 3 groups stevanspringer dchughes scroft clearbluespring shoshin FAB-lab G4ID Genetics-of-Gambling
  • t2prhd: a tool to study the patterns of repeat evolution
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Botond Sipos, Kalman Somogyi, Istvan Ando, Zsolt Penzes
    posted to genome by RamuAnandakrishnan on 2008-01-19 14:48:02 as ** along with 1 person and 1 group stajich Berkeley Mycology
  • Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package annotationTools
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Alexandre Kuhn, Ruth L Carter, Mauro Delorenzi
    posted to genome by RamuAnandakrishnan on 2008-01-17 16:28:08 as ** along with 10 people jyuh jfr balicea dullhunk ghattem heliopais ablejec zhouyu bertelsen sanchezbuelna
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