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allmenschs library [372 articles]

Nye artikler sendt til allmenschs bibliotek.
  • Simulating temperature jumps for protein folding.
    The journal of physical chemistry. B, Vol. 112, No. 5. (7 February 2008), pp. 1525-1532.
    by S Kim, AE Roitberg
    posted to trpzip tjump by allmensch on 2008-09-04 10:15:09 as **
  • Biophysics: Proteins hunt and gather
    Nature, Vol. 447, No. 7147. (20 June 2007), pp. 920-921.
    by David Eliezer, Arthur G Palmer
    posted to usa by allmensch on 2008-08-29 08:58:34 as **
  • Conformational changes in protein loops and helices induced by post-translational phosphorylation.
    PLoS computational biology, Vol. 2, No. 4. (April 2006)
    posted to usa by allmensch on 2008-08-20 10:30:35 as **
  • A hierarchical approach to all-atom protein loop prediction.
    Proteins, Vol. 55, No. 2. (1 May 2004), pp. 351-367.
    by MP Jacobson, DL Pincus, CS Rapp, TJ Day, B Honig, DE Shaw, RA Friesner
  • Conformational selection in silico: loop latching motions and ligand binding in enzymes.
    Proteins, Vol. 71, No. 1. (April 2008), pp. 153-164.
    by S Wong, MP Jacobson
    posted to usa by allmensch on 2008-08-20 10:27:00 as **
  • Induced Fit, Folding, and Recognition of the NF-κB-Nuclear Localization Signals by IκBgreek small letter alpha and IκBβ.
    Journal of molecular biology, Vol. 367, No. 1. (16 March 2007), pp. 262-274.
    by J Lätzer, GA Papoian, MC Prentiss, EA Komives, PG Wolynes
    posted to usa by allmensch on 2008-07-30 21:15:04 as **
  • Intrinsically Disordered Proteins in Human Diseases: Introducing the D(2) Concept.
    Annual review of biophysics, Vol. 37 (9 June 2008), pp. 215-246.
    by Vladimir N N Uversky, Christopher J J Oldfield, A Keith K Dunker
    posted to usa by allmensch on 2008-07-30 18:10:07 as ** along with 1 person chad_davis
  • Molecular Principles of the Interactions of Disordered Proteins
    Journal of Molecular Biology, Vol. 372, No. 2. (14 September 2007), pp. 549-561.
    by Balint Meszaros, Peter Tompa, Istvan Simon, Zsuzsanna Dosztanyi
    posted to usa by allmensch on 2008-07-30 18:02:45 as ** along with 3 people jyuh cjeans higueruelo
  • Structural disorder serves as a weak signal for intracellular protein degradation.
    Proteins (14 November 2007)
    by P Tompa, J Prilusky, I Silman, J L L Sussman
  • Operational definition of intrinsically unstructured protein sequences based on susceptibility to the 20S proteasome.
    Proteins, Vol. 70, No. 4. (March 2008), pp. 1357-1366.
    by P Tsvetkov, G Asher, A Paz, N Reuven, JL Sussman, I Silman, Y Shaul
    posted to usa by allmensch on 2008-07-30 17:57:46 as **
  • Intrinsic disorder as a mechanism to optimize allosteric coupling in proteins.
    Proc Natl Acad Sci U S A, Vol. 104, No. 20. (9 May 2007), pp. 8311-8315.
    by Vincent JJ Hilser, Brad
  • Structured proteins and proteins with intrinsic disorder
    Molecular Biology, Vol. 41, No. 2. (April 2007), pp. 262-277.
    by IN Serdyuk
    posted to usa by allmensch on 2008-07-30 17:50:07 as **
  • Binding of intrinsically disordered proteins is not necessarily accompanied by a structural transition to a folded form.
    Biochimie (22 November 2006)
    by Alexander B B Sigalov, Anastasia V V Zhuravleva, Vladislav Yu Y Orekhov
    posted to usa by allmensch on 2008-07-30 17:45:42 as ** along with 1 person nm
  • Intrinsic Disorder and Functional Proteomics
    Biophys. J., Vol. 92, No. 5. (1 March 2007), pp. 1439-1456.
    by Predrag Radivojac, Lilia M Iakoucheva, Christopher J Oldfield, Zoran Obradovic, Vladimir N Uversky, Keith A Dunker
    posted to usa by allmensch on 2008-07-30 17:43:08 as ** along with 2 people cjeans biehl
  • DisProt: the Database of Disordered Proteins.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by M Sickmeier, JA Hamilton, T LeGall, V Vacic, MS Cortese, A Tantos, B Szabo, P Tompa, J Chen, VN Uversky, Z Obradovic, AK Dunker
    posted to usa by allmensch on 2008-07-30 17:40:02 as ** along with 3 people chad_davis higueruelo choonpeng
  • Statistical coil model of the unfolded state: Resolving the reconciliation problem.
    Proc Natl Acad Sci U S A (30 August 2005)
    by Abhishek K K Jha, Andrés Colubri, Karl F F Freed, Tobin R R Sosnick
  • Amyloidogenesis of Natively Unfolded Proteins
    Current Alzheimer Research, Vol. 5, No. 3. (June 2008), pp. 260-287.
    by VN Uversky
    posted to alzheimer amyloidaggregation usa by allmensch on 2008-07-30 17:04:45 as **
  • Conserved Folding Pathways of [alpha]-Lactalbumin and Lysozyme Revealed by Kinetic CD, Fluorescence, NMR, and Interrupted Refolding Experiments
    Journal of Molecular Biology, Vol. 378, No. 3. (2 May 2008), pp. 686-698.
    by Kai Schlepckow, Julia Wirmer, Annett Bachmann, Thomas Kiefhaber, Harald Schwalbe
    posted to lysozyme nmr by allmensch on 2008-07-30 12:43:58 as **
  • Site-specific relaxation kinetics of a tryptophan zipper hairpin peptide using temperature-jump IR spectroscopy and isotopic labeling.
    Journal of the American Chemical Society, Vol. 130, No. 10. (12 March 2008), pp. 2984-2992.
    by K Hauser, C Krejtschi, R Huang, L Wu, TA Keiderling
    posted to trpzip by allmensch on 2008-06-30 10:02:41 as **
  • Announcing the worldwide Protein Data Bank
    Nat Struct Mol Biol, Vol. 10, No. 12. (December 2003), pp. 980-980.
    by Helen Berman, Kim Henrick, Haruki Nakamura
    posted to pdb usa by allmensch on 2008-06-24 16:24:55 as ** along with 2 people massivemayhem reyez
  • Free energy landscape of A-DNA to B-DNA conversion in aqueous solution.
    Journal of the American Chemical Society, Vol. 127, No. 18. (11 May 2005), pp. 6866-6876.
    by NK Banavali, B Roux
    posted to pmf usa by allmensch on 2008-06-24 15:06:52 as **
  • The N-terminal end of the catalytic domain of SRC kinase hck is a conformational switch implicated in long-range allosteric regulation.
    Structure (Camb), Vol. 13, No. 11. (November 2005), pp. 1715-1723.
    by NK Banavali, B Roux
    posted to pmf usa by allmensch on 2008-06-24 15:04:42 as ** along with 1 person kentsis
  • THE weighted histogram analysis method for free-energy calculations on biomolecules. I. The method
    Journal of Computational Chemistry, Vol. 13, No. 8. (1992), pp. 1011-1021.
    by Shankar Kumar, John M Rosenberg, Djamal Bouzida, Robert H Swendsen, Peter A Kollman
  • Efficient Monte Carlo methods for the computer simulation of biological molecules.
    Physical review. A, Vol. 45, No. 12. (15 June 1992), pp. 8894-8901.
    by D Bouzida, S Kumar, RH Swendsen
    posted to fluorobases usa wham by allmensch on 2008-06-23 14:42:02 as **
  • How Ras-related proteins talk to their effectors.
    Trends Biochem Sci, Vol. 21, No. 12. (December 1996), pp. 488-491.
    posted to ras usa by allmensch on 2008-06-17 13:43:48 as ** along with 1 person laurabailey
  • Nonphysical sampling distributions in Monte Carlo free-energy estimation - Umbrella sampling
    Journal of Computational Physics, Vol. 23 (February 1977), pp. 187-199.
    by GM Torrie, JP Valleau
    posted to fluorobases umbrellasampling usa by allmensch on 2008-06-15 16:15:52 as **
  • Protein conformational transitions coupled to binding in molecular recognition of unstructured proteins: Hierarchy of structural loss from all-atom Monte Carlo simulations of p27Kip1 unfolding-unbinding and structural determinants of the binding mechanism
    Biopolymers, Vol. 75, No. 5. (October 2004), pp. 420-433.
    posted to usa by allmensch on 2008-05-26 17:55:47 as **
  • Binding-Induced Folding of a Natively Unstructured Transcription Factor
    PLOS Computational Biology, Vol. 4, No. 4. (April 2008), e1000060.
    by AG Turjanski, JS Gutkind, RB Best, G Hummer
    posted to usa by allmensch on 2008-05-26 17:50:59 as **
  • Inherent flexibility and protein function: the open/closed conformational transition of the N-terminal domain of calmodulin
    (5 Nov 2007)
    by Swarnendu Tripathi, John J Portman
    posted to usa by allmensch on 2008-05-26 17:45:43 as **
  • Theory of protein folding.
    Curr Opin Struct Biol, Vol. 14, No. 1. (February 2004), pp. 70-75.
    by JN Onuchic, PG Wolynes
    posted to usa by allmensch on 2008-05-26 17:39:51 as ** along with 4 people dgront choonpeng rabio Diego_Prada
  • The interplay between structure and function in intrinsically unstructured proteins.
    FEBS Lett, Vol. 579, No. 15. (13 June 2005), pp. 3346-3354.
    by P Tompa
    posted to usa by allmensch on 2008-05-26 17:39:15 as ** along with 1 person perrywoo
  • Preformed structural elements feature in partner recognition by intrinsically unstructured proteins.
    J Mol Biol, Vol. 338, No. 5. (14 May 2004), pp. 1015-1026.
    posted to usa by allmensch on 2008-05-26 17:37:22 as ** along with 1 person chad_davis
  • The physics and bioinformatics of binding and folding-an energy landscape perspective.
    Biopolymers, Vol. 68, No. 3. (March 2003), pp. 333-349.
    by GA Papoian, PG Wolynes
    posted to usa by allmensch on 2008-05-26 17:36:55 as ** along with 1 person GermanErlenkamp
  • How common is the funnel-like energy landscape in protein-protein interactions?
    Protein science : a publication of the Protein Society, Vol. 10, No. 8. (August 2001), pp. 1572-1583.
    posted to usa by allmensch on 2008-05-26 17:35:49 as **
  • The Many Faces of Protein–Protein Interactions: A Compendium of Interface Geometry
    PLoS Computational Biology, Vol. 2, No. 9. (1 September 2006), e124.
    by Wan K Kim, Andreas Henschel, Christof Winter, Michael Schroeder
  • Identification of transient hub proteins and the possible structural basis for their multiple interactions
    Protein Sci, Vol. 17, No. 1. (1 January 2008), pp. 72-78.
    by Miho Higurashi, Takashi Ishida, Kengo Kinoshita
    posted to usa by allmensch on 2008-05-26 15:58:45 as ** along with 4 people bicko chad_davis balicea marti
  • Insights into protein structure and function from disorder-complexity space.
    Proteins (16 October 2006)
    by Edward A A Weathers, Michael E E Paulaitis, Thomas B B Woolf, Jan H H Hoh
    posted to usa by allmensch on 2008-05-26 15:55:50 as ** along with 1 person aalibes
  • A mobile loop order-disorder transition modulates the speed of chaperonin cycling.
    Protein science : a publication of the Protein Society, Vol. 13, No. 8. (August 2004), pp. 2139-2148.
    posted to usa by allmensch on 2008-05-26 15:54:05 as **
  • Analysis of ordered and disordered protein complexes reveals structural features discriminating between stable and unstable monomers.
    J Mol Biol, Vol. 341, No. 5. (27 August 2004), pp. 1327-1341.
    posted to usa by allmensch on 2008-05-26 15:51:39 as ** along with 2 people chad_davis marti
  • Recent successes of the energy landscape theory of protein folding and function.
    Quarterly reviews of biophysics, Vol. 38, No. 4. (November 2005), pp. 405-410.
    by PG Wolynes
    posted to usa by allmensch on 2008-05-26 15:42:39 as **
  • Mechanism of coupled folding and binding of an intrinsically disordered protein
    Nature (23 May 2007)
    by Kenji Sugase, Jane H Dyson, Peter E Wright
    posted to usa by allmensch on 2008-05-26 15:40:29 as ** along with 4 people cjeans amwands hsekiguc cactus
  • Simulating disorder-order transitions in molecular recognition of unstructured proteins: where folding meets binding.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 9. (29 April 2003), pp. 5148-5153.
    by GM Verkhivker, D Bouzida, DK Gehlhaar, PA Rejto, ST Freer, PW Rose
    posted to usa by allmensch on 2008-05-26 15:38:08 as **
  • Speeding molecular recognition by using the folding funnel: the fly-casting mechanism.
    Proc Natl Acad Sci U S A, Vol. 97, No. 16. (1 August 2000), pp. 8868-8873.
    by BA Shoemaker, JJ Portman, PG Wolynes
  • Refined crystal structure of the triphosphate conformation of H-ras p21 at 1.35 A resolution: implications for the mechanism of GTP hydrolysis.
    EMBO J, Vol. 9, No. 8. (August 1990), pp. 2351-2359.
    by EF Pai, U Krengel, GA Petsko, RS Goody, W Kabsch, A Wittinghofer
    posted to gtpbound ras usa xray by allmensch on 2008-05-23 12:58:07 as ** along with 1 person laurabailey
  • Structural and mechanistic insights into ras association domains of phospholipase C epsilon.
    Molecular cell, Vol. 21, No. 4. (17 February 2006), pp. 495-507.
    posted to complex ras usa xray by allmensch on 2008-05-23 12:55:10 as **
  • Tumour prevention by a single antibody domain targeting the interaction of signal transduction proteins with RAS
    The EMBO Journal, Vol. 26, No. 13. (14 June 2007), pp. 3250-3259.
    by Tomoyuki Tanaka, Roger L Williams, Terence H Rabbitts
    posted to complex ras usa xray by allmensch on 2008-05-22 12:54:18 as **
  • Structural evidence for feedback activation by Ras.GTP of the Ras-specific nucleotide exchange factor SOS.
    Cell, Vol. 112, No. 5. (7 March 2003), pp. 685-695.
    posted to complex ras usa xray by allmensch on 2008-05-22 12:47:02 as **
  • The structural basis of the activation of Ras by Sos.
    Nature, Vol. 394, No. 6691. (23 July 1998), pp. 337-343.
    posted to complex ras usa xray by allmensch on 2008-05-22 10:13:04 as ** along with 1 person barry
  • Crystal structure and functional analysis of Ras binding to its effector phosphoinositide 3-kinase gamma.
    Cell, Vol. 103, No. 6. (8 December 2000), pp. 931-943.
    posted to complex ras usa xray by allmensch on 2008-05-22 09:47:43 as **
  • The Ras-RasGAP complex: structural basis for GTPase activation and its loss in oncogenic Ras mutants.
    Science (New York, N.Y.), Vol. 277, No. 5324. (18 July 1997), pp. 333-338.
    posted to complex ras usa xray by allmensch on 2008-05-22 09:45:20 as **
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