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aprasads library [501 articles]

Nye artikler sendt til aprasads bibliotek.
  • Reduced purifying selection prevails over positive selection in human copy number variant evolution.
    Genome research (7 August 2008)
    by Duc-Quang Q Nguyen, Caleb P P Webber, Jayne Hehir-Kwa, Rolph Pfundt, Joris Veltman, Chris P P Ponting
    posted to selection human genomics genome_evolution genome evolution cnv by aprasad on 2008-08-19 22:52:06 as ** along with 1 person bpcusack
  • Selective Constraints in Experimentally Defined Primate Regulatory Regions
    PLoS Genet, Vol. 4, No. 8. (2008), e1000157.
    by Daniel J Gaffney, Ran Blekhman, Jacek Majewski
    posted to selection regulatory cns by aprasad on 2008-08-15 20:10:22 as ** along with 6 people and 2 groups cisevol maximilianh caseybrown pradiptaray bpcusack djkt cis-regulatory-evolution BergmanLab
  • Mitogenomic relationships of placental mammals and molecular estimates of their divergences.
    Gene, Vol. 421, No. 1-2. (15 September 2008), pp. 37-51.
    by U Arnason, JA Adegoke, A Gullberg, EH Harley, A Janke, M Kullberg
    posted to tree time_tree mitochondria mammal by aprasad on 2008-08-13 20:43:43 as **
  • Segment-based multiple sequence alignment
    Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i187-192.
    by Tobias Rausch, Anne-Katrin Emde, David Weese, Andreas Doring, Cedric Notredame, Knut Reinert
    posted to tools msa methods alignment by aprasad on 2008-08-13 18:59:33 as ** along with 5 people chad_davis Ema zwang APRegier djkt
  • Subdivision in an ancestral species creates asymmetry in gene trees.
    Molecular biology and evolution (9 August 2008)
    by Montgomery Slatkin, Joshua L L Pollack
    posted to phylogenetics model incongruence horizontal_gene_transfer by aprasad on 2008-08-13 16:56:30 as **
  • Comparative analysis of testis protein evolution in rodents
    Genetics (9 August 2008), genetics.107.085902.
    by Leslie M Turner, Edward B Chuong, Hopi E Hoekstra
    posted to selection rodents protein evolution by aprasad on 2008-08-11 16:22:58 as ** along with 2 people dchughes djkt
  • Genomic medicine in Mexico: Initial steps and the road ahead.
    Genome research, Vol. 18, No. 8. (August 2008), pp. 1191-1198.
    by G Jimenez-Sanchez, I Silva-Zolezzi, A Hidalgo, S March
    posted to mexico genomics by aprasad on 2008-08-07 22:08:30 as **
  • Genome size evolution: Within-species variation in genome size
    Heredity, Vol. aop, No. current.
    by C Biémont
    posted to intraspecifc_variation genome_size comment by aprasad on 2008-08-03 20:54:47 as **
  • NcDNAlign: Plausible multiple alignments of non-protein-coding genomic sequences.
    Genomics (27 May 2008)
    by Dominic Rose, Jana Hertel, Kristin Reiche, Peter F F Stadler, Jörg Hackermüller
    posted to tools msa methods alignment by aprasad on 2008-07-30 16:16:50 as ** along with 1 person maximilianh
  • Reduced Number of Ribosomal Sites in Bats: Evidence for a Mechanism to Contain Genome Size
    Journal of Mammalogy, Vol. 73, No. 4. (1992), pp. 847-858.
    by Robert J Baker, Mary Maltbie, James G Owen, Meredith J Hamilton, Robert D Bradley
    posted to genome_size genome_evolution flying_dna bat by aprasad on 2008-07-28 18:57:09 as **
  • The Chromosomal Polymorphism Linked to Variation in Social Behavior in the White-Throated Sparrow (Zonotrichia albicollis) Is a Complex Rearrangement and Suppressor of Recombination
    Genetics, Vol. 179, No. 3. (1 July 2008), pp. 1455-1468.
    by James W Thomas, Mario Caceres, Joshua J Lowman, Caroline B Morehouse, Meghan E Short, Erin L Baldwin, Donna L Maney, Christa L Martin
    posted to thomas rearrangement evolution chromosome by aprasad on 2008-07-23 19:11:43 as **
  • Comparative physical mapping: Universal overgo hybridization probe design and BAC library hybridization.
    Methods in molecular biology (Clifton, N.J.), Vol. 422 (2008), pp. 119-132.
    by JW Thomas
    posted to overgo methods bac_mapping by aprasad on 2008-07-20 21:28:28 as **
  • Coexpression of Linked Genes in Mammalian Genomes Is Generally Disadvantageous
    Mol Biol Evol, Vol. 25, No. 8. (1 August 2008), pp. 1555-1565.
    by Ben-Yang Liao, Jianzhi Zhang
    posted to selection linkage expression evolution by aprasad on 2008-07-17 00:31:56 as ** along with 3 people zwang bpcusack djkt
  • Automated mapping of large-scale chromatin structure in ENCODE.
    Bioinformatics (Oxford, England) (30 June 2008)
    by Heng Lian, William A A Thompson, Robert Thurman, John A A Stamatoyannopoulos, William Stafford S Noble, Charles E E Lawrence
    posted to regulatory dnasei chromatin by aprasad on 2008-07-17 00:24:20 as ** along with 1 person djkt
  • Characterization of pairwise and multiple sequence alignment errors.
    Gene (3 June 2008)
    by Giddy Landan, Dan Graur
    posted to simulation phylogenetic_accuracy alignment_error alignment by aprasad on 2008-07-14 15:48:01 as **
  • Cell size does not always correspond to genome size: Phylogenetic analysis in geckos questions optimal DNA theories of genome size evolution.
    Zoology (Jena, Germany) (30 June 2008)
    by Zuzana Starostová, Lukáš Kratochvíl, Martin Flajšhans
    posted to nucleotypic_effect genome_size by aprasad on 2008-07-08 16:33:08 as **
  • Phylogenetic Signal in the Eukaryotic Tree of Life
    Science, Vol. 321, No. 5885. (4 July 2008), pp. 121-123.
    by Michael J Sanderson
    posted to phylogenomics phylogenetic_signal phylogenetics by aprasad on 2008-07-07 20:05:55 as ** along with 7 people and 3 groups jlgreen stajich djkt gulsacan dchughes marck caseybrown iSEEM Green Lab Berkeley Mycology
  • Assessing the Evolutionary Impact of Amino Acid Mutations in the Human Genome
    PLoS Genet, Vol. 4, No. 5. (30 May 2008), e1000083.
    by Adam R Boyko, Scott H Williamson, Amit R Indap, Jeremiah D Degenhardt, Ryan D Hernandez, Kirk E Lohmueller, Mark D Adams, Steffen Schmidt, John J Sninsky, Shamil R Sunyaev, Thomas J White, Rasmus Nielsen, Andrew G Clark, Carlos D Bustamante
    posted to selection population_genetics mutation_rate fitness aa by aprasad on 2008-06-30 19:27:26 as ** along with 1 person bpcusack
  • EVOLUTION: Building the Tree of Life, Genome by Genome
    Science, Vol. 320, No. 5884. (27 June 2008), pp. 1716-1717.
    by Elizabeth Pennisi
    posted to review phylogenomics by aprasad on 2008-06-27 23:43:07 as ** along with 3 people and 2 groups jlgreen gulsacan renatomilani iSEEM Green Lab
  • Phylogenetic incongruence in the Drosophila melanogaster species group.
    Molecular phylogenetics and evolution, Vol. 43, No. 3. (June 2007), pp. 1138-1150.
    by A Wong, JD Jensen, JE Pool, CF Aquadro
    posted to phylogenetics incongruence by aprasad on 2008-06-27 19:23:40 as **
  • A Mixed Branch Length Model of Heterotachy Improves Phylogenetic Accuracy
    Mol Biol Evol, Vol. 25, No. 6. (1 June 2008), pp. 1054-1066.
    by Bryan Kolaczkowski, Joseph W Thornton
    posted to simulation phylogenetics model evolution by aprasad on 2008-06-26 21:39:09 as **
  • Fast Evolution of Core Promoters in Primate Genomes
    Mol Biol Evol, Vol. 25, No. 6. (1 June 2008), pp. 1239-1244.
    by Han Liang, Yeong-Shin Lin, Wen-Hsiung Li
    posted to substitution_rate promoter primate evolution by aprasad on 2008-06-26 21:31:30 as ** along with 2 people and 1 group cisevol Stew cis-regulatory-evolution
  • jModelTest: Phylogenetic Model Averaging
    Mol Biol Evol, Vol. 25, No. 7. (1 July 2008), pp. 1253-1256.
    by David Posada
    posted to tools model_choice methods by aprasad on 2008-06-26 21:29:49 as **
  • Morphology and Placental Mammal Phylogeny
    Systematic Biology, Vol. 57, No. 3. (2008), pp. 499-503.
    by Mark S Springer, Robert W Meredith, Eduardo Eizirik, Emma Teeling, William J Murphy
    posted to tree phylogenetics morphology mammal by aprasad on 2008-06-24 21:17:43 as **
  • Hemiplasy: A New Term in the Lexicon of Phylogenetics
    Systematic Biology, Vol. 57, No. 3. (2008), pp. 503-507.
    by John C Avise, Terence J Robinson
    posted to lineage_sorting by aprasad on 2008-06-24 21:13:18 as **
  • Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635.
    by Ari Loytynoja, Nick Goldman
    posted to methods indel alignment by aprasad on 2008-06-23 19:05:48 as ** along with 22 people and 3 groups marti nuin emptyhb michaelbarton jlgreen AbnerCYH bpcusack bmaust gulsacan Schmidtc bpb zwang imtechnology marck ArtemPankin djkt gjuggler hpaces dinnes chad_davis jago phoenixzxl iSEEM Green Lab Khavkin's lab
  • primetv: A viewer for reconciled trees
    BMC Bioinformatics, Vol. 8 (07 May 2007), 148.
    by Bengt Sennblad, Eva Schreil, Ann-Charlotte B Sonnhammer, Jens Lagergren, Lars Arvestad
    posted to tree_visualization tools methods by aprasad on 2008-06-19 22:45:22 as **
  • A mobile element based phylogeny of Old World monkeys
    Molecular Phylogenetics and Evolution, Vol. 37, No. 3. (December 2005), pp. 872-880.
    by Jinchuan Xing, Hui Wang, Kyudong Han, David A Ray, Cheney H Huang, Leona G Chemnick, Caro-Beth Stewart, Todd R Disotell, Oliver A Ryder, Mark A Batzer
    posted to tree rare_genomic_characters phylogenetics catarrhini by aprasad on 2008-06-19 22:19:37 as **
  • Moving primate genomics beyond the chimpanzee genome
    Trends in Genetics, Vol. 21, No. 9. (September 2005), pp. 511-517.
    by Morris Goodman, Lawrence I Grossman, Derek E Wildman
    posted to tree review primate by aprasad on 2008-06-19 22:16:40 as ****
  • More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy.
    Molecular biology and evolution, Vol. 22, No. 5. (May 2005), pp. 1337-1344.
    by A Rokas, SB Carroll
    posted to taxon_sampling phylogenomics phylogenetics phylogenetic_accuracy by aprasad on 2008-06-19 21:49:06 as **
  • Molecular phylogeny and divergence times of Malagasy tenrecs: influence of data partitioning and taxon sampling on dating analyses.
    BMC Evolutionary Biology, Vol. 8 (31 March 2008), 102.
    by Celine Poux, Ole Madsen, Julian Glos, Wilfried W de Jong, Miguel Vences
    posted to time_tree time methods afrotheria by aprasad on 2008-06-19 20:24:39 as **
  • Uprobe 2008: an online resource for universal overgo hybridization-based probe retrieval and design.
    Nucleic acids research (30 May 2008)
    by Robert T T Sullivan, Caroline B B Morehouse, , James W W Thomas
    posted to uprobe overgo by aprasad on 2008-06-17 21:56:22 as **
  • Genome size diversity in the family Drosophilidae
    Heredity, Vol. aop, No. current.
    by TR Gregory, JS Johnston
    posted to genome_size drosophila by aprasad on 2008-06-17 21:54:27 as **
  • A diversity profile of the human skin microbiota.
    Genome research (23 May 2008)
    by Elizabeth A A Grice, Heidi H H Kong, Gabriel Renaud, Alice C C Young, , Gerard G G Bouffard, Robert W W Blakesley, Tyra G G Wolfsberg, Maria L L Turner, Julia A A Segre
    posted to skin human_microbiome bacteria by aprasad on 2008-05-28 15:47:29 as ** along with 3 people and 1 group sconlan djkt caseybrown iSEEM
  • Flying lemurs - the "flying tree shrews"? Molecular cytogenetic evidence for a Scandentia-Dermoptera sister clade
    BMC Biology, Vol. 6 (01 May 2008), 18.
    by Wenhui Nie, Beiyuan Fu, Patricia CM O'Brien, Jinhuan Wang, Weiting Su, Alongklod Tanomtong, Vitaly Volobouev, Malcolm A Ferguson-Smith, Fengtang Yang
    posted to primate phylogenetics cytogenetics by aprasad on 2008-05-28 14:15:04 as **
  • Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements
    Proceedings of the National Academy of Sciences (11 December 2007), 0705658104.
    by Sergey I Nikolaev, Juan I Montoya-Burgos, Konstantin Popadin, Leila Parand, Elliott H Margulies, National, Stylianos E Antonarakis
    posted to substitution_rate evolution coding cns by aprasad on 2008-05-22 20:05:25 as ** along with 4 people and 1 group djkt cjeans zwang cisevol cis-regulatory-evolution
  • Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes
    PLoS Computational Biology, Vol. 4, No. 4. (2008), e1000057.
    by Jon Bohlin, Eystein Skjerve, David W Ussery
    posted to motif gc by aprasad on 2008-05-22 19:38:54 as ** along with 1 person djkt
  • Sequence Context affects the rate of short insertions and deletions in flies and primates
    Genome Biology, Vol. 9 (21 February 2008), R37.
    by Amos Tanay, Eric D Siggia
    posted to mutation_rate indel human_genome evolution drosophila by aprasad on 2008-05-19 15:38:57 as ** along with 5 people brant djkt lusk biomcgary gjuggler
  • Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting
    PLoS Genetics, Vol. 2, No. 10. (1 October 2006), e173.
    by Daniel A Pollard, Venky N Iyer, Alan M Moses, Michael B Eisen
    posted to phylogenetics lineage_sorting drosophila by aprasad on 2008-05-16 21:17:53 as ** along with 1 person mailund
  • Darwin's dilemma: the realities of the Cambrian ‘explosion’
    Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 361, No. 1470. (29 June 2006), pp. 1069-1083.
    by Simon C Morris
    posted to molecular_clock evolution cambrian by aprasad on 2008-05-16 21:02:17 as **
  • The impact of recombination on nucleotide substitutions in the human genome.
    PLoS genetics, Vol. 4, No. 5. (May 2008)
    by L Duret, PF Arndt
    posted to recombination mutation_rate isochore human_genome gc by aprasad on 2008-05-15 15:46:09 as ** along with 2 people balicea gjuggler
  • Physical mapping in large genomes: accelerating anchoring of BAC contigs to genetic maps through in silico analysis.
    Funct Integr Genomics, Vol. 8, No. 1. (February 2008), pp. 29-32.
    by E Paux, F Legeai, N Guilhot, AF Adam-Blondon, M Alaux, J Salse, P Sourdille, P Leroy, C Feuillet
    posted to fpc bac_mapping bac by aprasad on 2008-05-13 15:45:28 as ** along with 1 person urgi
  • Analysis of Sequence Conservation at Nucleotide Resolution
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e254.
    by Saurabh Asthana, Mikhail Roytberg, John Stamatoyannopoulos, Shamil Sunyaev
    posted to methods mcs conservation comparative_genomics by aprasad on 2008-05-13 15:42:29 as ** along with 4 people djkt GustavoLacerda nklee maximilianh
  • Genomic clocks and evolutionary timescales.
    Trends Genet, Vol. 19, No. 4. (April 2003), pp. 200-206.
    by S Blair Hedges, S Kumar
    posted to review molecular_clock methods by aprasad on 2008-05-13 01:20:45 as ** along with 1 person bandrewfox
  • Selection on Major Components of Angiosperm Genomes
    Science, Vol. 320, No. 5875. (25 April 2008), pp. 484-486.
    by Brandon S Gaut, Jeffrey Ross-Ibarra
    posted to selection plant genome_size evolution by aprasad on 2008-05-12 20:01:54 as ** along with 4 people and 1 group echinotrix ArtemPankin timflutre biomcgary Khavkin's lab
  • Population size and genome size in fishes: a closer look.
    Genome / National Research Council Canada = Génome / Conseil national de recherches Canada, Vol. 51, No. 4. (April 2008), pp. 309-313.
    by TR Gregory, JD Witt
    posted to population_genetics genome_size fish by aprasad on 2008-05-12 19:04:02 as **
  • High-Resolution Mapping and Characterization of Open Chromatin across the Genome.
    Cell, Vol. 132, No. 2. (25 January 2008), pp. 311-322.
    by AP Boyle, S Davis, HP Shulha, P Meltzer, EH Margulies, Z Weng, TS Furey, GE Crawford
    posted to human_genome epigenetics chromatin by aprasad on 2008-05-10 14:23:20 as ** along with 3 people djkt bootsy epigenetics
  • Genome size, cell size, and the evolution of enucleated erythrocytes in attenuate salamanders.
    Zoology (Jena, Germany), Vol. 111, No. 3. (1 May 2008), pp. 218-230.
    by Rachel Lockridge L Mueller, T Ryan Gregory, Sean M M Gregory, Alice Hsieh, Jeffrey L L Boore
    posted to nucleotypic_effect genome_size by aprasad on 2008-05-09 18:02:15 as **
  • The evolution of genome size in ants
    BMC Evolutionary Biology, Vol. 8 (26 February 2008), 64.
    by Neil D Tsutsui, Andrew V Suarez, Joseph C Spagna, Spencer J Johnston
    posted to nucleotypic_effect genome_size evolution by aprasad on 2008-05-09 17:59:11 as **
  • Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?
    BMC Evolutionary Biology, Vol. 8 (26 March 2008), 95.
    by Stefanie Hartmann, Todd J Vision
    posted to phylogenomics phylogenetics indel est alignment by aprasad on 2008-05-09 17:56:28 as ** along with 2 people and 1 group stajich Patola Berkeley Mycology
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