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austins rna [88 articles]

Artikler nylig sendt til austins bibliotek klassifisert med nøkkelordet rna. You can also see everyone's rna.
  • Self-splicing of a group I intron reveals partitioning of native and misfolded RNA populations in yeast.
    RNA (New York, N.Y.), Vol. 12, No. 12. (December 2006), pp. 2149-2159.
    by SA Jackson, S Koduvayur, SA Woodson
    posted to tetrahymena rna kinetictrap groupi folding by austin on 2008-07-21 04:10:19 as read
  • notes Circular mRNA can direct translation of extremely long repeating-sequence proteins in vivo.
    RNA (New York, N.Y.), Vol. 4, No. 9. (September 1998), pp. 1047-1054.
    by R Perriman, M Ares
    posted to rna ribozyme groupi by austin on 2008-07-17 02:45:38 as read
  • Synthesis of circular RNA in bacteria and yeast using RNA cyclase ribozymes derived from a group I intron of phage T4.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 91, No. 8. (12 April 1994), pp. 3117-3121.
    by E Ford, M Ares
    posted to rna ribozyme groupi by austin on 2008-07-17 02:32:47 as read
  • CONTRAfold: RNA secondary structure prediction without physics-based models.
    Bioinformatics, Vol. 22, No. 14. (15 July 2006)
    by CB Do, DA Woods, S Batzoglou
    posted to structure secondary rna prediction folding by austin on 2008-07-17 02:09:45 as read along with 6 people and 3 groups balajis marcius tardigrade penka condon acarbo beta BioinfoCIPF SGU-CIPF
  • notes Specificity of RNA-RNA helix recognition.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 18. (3 September 2002), pp. 11676-11681.
    by DJ Battle, JA Doudna
    posted to structure rna a-minor by austin on 2008-07-14 02:05:16 as read
  • 5' exon replacement and repair by spliceosome-mediated RNA trans-splicing.
    RNA (New York, N.Y.), Vol. 9, No. 10. (October 2003), pp. 1290-1297.
    by SG Mansfield, RH Clark, M Puttaraju, J Kole, JA Cohn, LG Mitchell, MA Garcia-Blanco
    posted to trans-splicing spliceosome rna by austin on 2008-07-13 20:28:03 as read
  • Generalized RNA-directed recombination of RNA.
    Chemistry & biology, Vol. 10, No. 12. (December 2003), pp. 1233-1243.
    by CA Riley, N Lehman
    posted to rna ribozyme recombination by austin on 2008-07-13 19:44:36 as read
  • RNA-catalyzed RNA ligation on an external RNA template.
    Chemistry & biology, Vol. 9, No. 3. (March 2002), pp. 297-307.
    by KE McGinness, GF Joyce
    posted to rna ribozyme ligation evolution by austin on 2008-07-13 19:07:19 as read
  • Controlling messenger RNA stability in bacteria: strategies for engineering gene expression.
    Biotechnology progress, Vol. 13, No. 6. (c 1997), pp. 699-708.
    by TA Carrier, JD Keasling
    posted to syntheticbiology stability rna by austin on 2008-07-12 13:54:40 as read
  • RNA synthetic biology
    Nature Biotechnology, Vol. 24, No. 5. (05 May 2006), pp. 545-554.
    by Farren J Isaacs, Daniel J Dwyer, James J Collins
    posted to syntheticbiology rna by austin on 2008-07-11 21:54:51 as read along with 5 people and 4 groups rklancer lingchong marcius balabu dbikard BioinfoCIPF SGU-CIPF Centre de Recherches Interdisciplinaires SynBioSys
  • Ribozyme-mediated selective induction of new gene activity in hepatitis C virus internal ribosome entry site-expressing cells by targeted trans-splicing.
    Molecular therapy : the journal of the American Society of Gene Therapy, Vol. 7, No. 3. (March 2003), pp. 386-395.
    by KJ Ryu, JH Kim, SW Lee
    posted to trans-splicing rna ribozyme groupi genetherapy by austin on 2008-07-11 21:31:18 as read
  • A versatile communication module for controlling RNA folding and catalysis.
    Nucleic acids research, Vol. 30, No. 21. (1 November 2002), pp. 4599-4606.
    by A Kertsburg, GA Soukup
    posted to rna ribozyme control by austin on 2008-07-11 18:52:06 as read
  • Rube Goldberg goes (ribo)nuclear? Molecular switches and sensors made from RNA
    RNA, Vol. 9, No. 4. (1 April 2003), pp. 377-383.
    by Scott K Silverman
    posted to switches rna ribozyme by austin on 2008-07-11 18:49:47 as read along with 1 person eckart_bindewald
  • RNA visualization in live bacterial cells using fluorescent protein complementation
    Nat Meth, Vol. 4, No. 5. (May 2007), pp. 421-427.
    by Maria Valencia-Burton, Ron M Mccullough, Charles R Cantor, Natalia E Broude
    posted to rna reporter aptamer by austin on 2008-07-11 00:03:53 as read along with 4 people medelyan jyuh madhadron zwang
  • RNA folding: models and perspectives.
    Curr Opin Struct Biol, Vol. 13, No. 3. (June 2003), pp. 309-316.
    by TR Sosnick, T Pan
    posted to rna folding by austin on 2008-07-04 23:59:38 as read along with 3 people and 2 groups evaf marcius Hosna BioinfoCIPF SGU-CIPF
  • The structural basis of ribozyme-catalyzed RNA assembly.
    Science, Vol. 315, No. 5818. (16 March 2007), pp. 1549-1553.
    by MP Robertson, WG Scott
    posted to structure rna ribozyme ligase by austin on 2008-07-04 23:59:09 as read along with 1 person jwm
  • Prediction of RNA secondary structure by free energy minimization.
    Curr Opin Struct Biol, Vol. 16, No. 3. (June 2006), pp. 270-278.
    by DH Mathews, DH Turner
    posted to rna folding by austin on 2008-07-04 23:58:34 as ** along with 1 person onufriev
  • Predicting a set of minimal free energy RNA secondary structures common to two sequences.
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2246-2253.
    by DH Mathews
    posted to rna folding by austin on 2008-07-04 23:58:21 as read along with 3 people and 2 groups marcius eckart_bindewald arcticrasta BioinfoCIPF SGU-CIPF
  • Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization.
    RNA, Vol. 10, No. 8. (August 2004), pp. 1178-1190.
    by DH Mathews
    posted to rna folding by austin on 2008-07-04 23:58:02 as read along with 5 people and 1 group evaf arcticrasta condon Hosna Kiarostami beta
  • Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure.
    Proc Natl Acad Sci U S A, Vol. 101, No. 19. (11 May 2004), pp. 7287-7292.
    by DH Mathews, MD Disney, JL Childs, SJ Schroeder, M Zuker, DH Turner
    posted to rna folding by austin on 2008-07-04 23:57:43 as read along with 4 people and 1 group eckart_bindewald arcticrasta condon Hosna beta
  • A method for rapid similarity analysis of RNA secondary structures
    BMC Bioinformatics, Vol. 7 (08 November 2006), 493.
    by Na Liu, Tianming Wang
    posted to rna folding by austin on 2008-07-04 23:57:22 as read along with 1 person dquest
  • How do RNA folding algorithms work?
    Nature Biotechnology, Vol. 22, No. 11., 1457.
    by Sean R Eddy
    posted to rna folding by austin on 2008-07-04 23:56:18 as read along with 10 people and 2 groups cambray evaf marcius tardigrade mtagaya 3times3 cthachuk magnolia maralena guxiyou BioinfoCIPF SGU-CIPF
  • Clustering of RNA Secondary Structures with Application to Messenger RNAs
    Journal of Molecular Biology, Vol. 359, No. 3. (9 June 2006), pp. 554-571.
    by Ye Ding, Chi Y Chan, Charles E Lawrence
    posted to structure sfold secondary rna by austin on 2008-07-04 23:55:51 as read along with 1 person tardigrade
  • Revolutions in RNA Secondary Structure Prediction
    Journal of Molecular Biology, Vol. 359, No. 3. (9 June 2006), pp. 526-532.
    by David H Mathews
    posted to structure secondary rna prediction by austin on 2008-07-04 22:44:48 as read along with 9 people and 2 groups winterschlaefer marcius arcticrasta penka Eonwe cthachuk emidio_capriotti physics maralena BioinfoCIPF SGU-CIPF
  • RNA folding during transcription.
    Annual review of biophysics and biomolecular structure, Vol. 35 (2006), pp. 161-175.
    by T Pan, T Sosnick
    posted to transcription rna ribozyme folding by austin on 2008-07-04 14:00:08 as **
  • Ribozyme-mediated revision of RNA and DNA.
    The Journal of clinical investigation, Vol. 112, No. 3. (August 2003), pp. 312-318.
    by MB Long, JP Jones, BA Sullenger, J Byun
    posted to rna ribozyme review dna by austin on 2008-07-04 00:40:12 as read
  • The interaction networks of structured RNAs
    Nucleic Acids Research, Vol. 34, No. 22. (December 2006), pp. 6587-6604.
    by Lescoute, , Westhof,
    posted to structure secondary rna by austin on 2008-06-29 02:12:36 as read along with 6 people and 2 groups reyez jennifermbui marcius jarasch debatebob ankur_iitg BioinfoCIPF SGU-CIPF
  • notes Widespread selection for local RNA secondary structure in coding regions of bacterial genes.
    Genome research, Vol. 13, No. 9. (September 2003), pp. 2042-2051.
    by L Katz, CB Burge
    posted to rna interesting codon bias by austin on 2008-06-29 02:11:23 as read
  • Engineering a ligand-dependent RNA transcriptional activator.
    Chem Biol, Vol. 11, No. 8. (August 2004), pp. 1157-1163.
    by AR Buskirk, A Landrigan, DR Liu
    posted to rna aptamer activator by austin on 2008-06-29 01:58:00 as read along with 2 people mdimmic leelarcombe
  • Kinetic Intermediates Trapped by Native Interactions in RNA Folding
    Science, Vol. 279, No. 5358. (20 March 1998), pp. 1943-1946.
    by Daniel K Treiber, Martha S Rook, Patrick P Zarrinkar, James R Williamson
    posted to tetrahymena rna folding by austin on 2008-06-25 22:52:09 as read
  • Folding intermediates of a self-splicing RNA: mispairing of the catalytic core.
    Journal of molecular biology, Vol. 280, No. 4. (24 July 1998), pp. 597-609.
    by J Pan, SA Woodson
    posted to tetrahymena rna ribozyme groupi folding by austin on 2008-06-25 21:57:52 as read
  • notes Rational design and rapid screening of antisense oligonucleotides for prokaryotic gene modulation
    Nucleic Acids Research, Vol. 34, No. 19. (November 2006), pp. 5660-5669.
    by Shao, Yu, Wu, Yan, Chan, Chi Yu, Mcdonough, Kathleen, Ding, Ye
    posted to sfold rna prediction accessibility by austin on 2008-06-24 12:26:54 as read along with 1 person ilh
  • Efficient and specific repair of sickle beta-globin RNA by trans-splicing ribozymes.
    RNA (New York, N.Y.), Vol. 9, No. 10. (October 2003), pp. 1254-1263.
    by J Byun, N Lan, M Long, BA Sullenger
    posted to trans-splicing rna ribozyme repair groupi by austin on 2008-06-22 04:55:40 as read
  • Improved native affinity purification of RNA
    RNA, Vol. 13, No. 8. (1 August 2007), pp. 1384-1389.
    by Robert T Batey, Jeffrey S Kieft
    posted to rna ribozyme purification by austin on 2008-06-11 13:05:46 as read along with 1 person zibdum
  • Recent insights on RNA folding mechanisms from catalytic RNA.
    Cellular and molecular life sciences : CMLS, Vol. 57, No. 5. (May 2000), pp. 796-808.
    by SA Woodson
    posted to rna ribozyme folding by austin on 2008-06-02 20:59:53 as **
  • Switching on and off with RNA.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 18. (29 August 2000), pp. 9824-9826.
    by S Altuvia, EG Wagner
    posted to switch rna riboregulator oxys dsra by austin on 2008-05-29 22:35:36 as read along with 1 person dquest
  • RNA chaperones, RNA annealers and RNA helicases.
    RNA biology, Vol. 4, No. 3. (November 2007), pp. 118-130.
    by L Rajkowitsch, D Chen, S Stampfl, K Semrad, C Waldsich, O Mayer, MF Jantsch, R Konrat, U Bläsi, R Schroeder
    posted to rna review helicase folding chaperone annealing by austin on 2008-05-29 17:13:19 as read
  • RNA chaperone activity and RNA-binding properties of the E. coli protein StpA.
    Nucleic acids research, Vol. 35, No. 4. (2007), pp. 1257-1269.
    by O Mayer, L Rajkowitsch, C Lorenz, R Konrat, R Schroeder
    posted to td stpa rna chaperone by austin on 2008-05-28 00:25:48 as read
  • Influence of RNA structural stability on the RNA chaperone activity of the Escherichia coli protein StpA.
    Nucleic acids research, Vol. 33, No. 7. (2005), pp. 2280-2289.
    by R Grossberger, O Mayer, C Waldsich, K Semrad, S Urschitz, R Schroeder
    posted to td stpa splicing rna ribozyme chaperone by austin on 2008-05-27 23:52:37 as read
  • Evidence for kinetic effects in the folding of large RNA molecules
    The Journal of Chemical Physics, Vol. 105, No. 16. (1996), pp. 7152-7157.
    by Steven R Morgan, Paul G Higgs
    posted to rna kinetics folding by austin on 2008-05-25 18:25:00 as read
  • Comprehensive features of natural and in vitro selected GNRA tetraloop-binding receptors
    Nucl. Acids Res. (23 December 2007), gkm1048.
    by Cody Geary, Stephanie Baudrey, Luc Jaeger
    posted to tetraloop rna gnra folding by austin on 2008-05-11 21:34:27 as read
  • The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data
    Nature, Vol. 452, No. 7183., pp. 51-55.
    by Marc Parisien, François Major
    posted to structure software rna prediction folding by austin on 2008-05-10 17:34:39 as read along with 3 people reyez zwang elfar
  • Dissecting RNA chaperone activity.
    RNA (New York, N.Y.), Vol. 13, No. 12. (December 2007), pp. 2053-2060.
    by L Rajkowitsch, R Schroeder
    posted to stpa s1 rnarna rna hfq chaperone by austin on 2008-04-28 23:56:54 as read
  • Isolation of small RNA-binding proteins from E. coli : evidence for frequent interaction of RNAs with RNA polymerase.
    RNA biology, Vol. 5, No. 1. (4 February 2008)
    by Nikolai Windbichler, Frederike von Pelchrzim, Oliver Mayer, Edina Csaszar, Renée Schroeder
    posted to srna rna hfq coli by austin on 2008-04-28 23:26:34 as read
  • The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs.
    Molecular cell, Vol. 9, No. 1. (January 2002), pp. 11-22.
    by A Zhang, KM Wassarman, J Ortega, AC Steven, G Storz
    posted to rna hfq chaperone by austin on 2008-04-28 20:52:29 as read
  • Rfam: annotating non-coding RNAs in complete genomes.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by S Griffiths-Jones, S Moxon, M Marshall, A Khanna, SR Eddy, A Bateman
    posted to rna rfam database by austin on 2008-04-25 22:54:28 as read along with 5 people ppgardne mtagaya Hosna raylim dandaman
  • Displaying the information contents of structural RNA alignments: the structure logos.
    Comput Appl Biosci, Vol. 13, No. 6. (December 1997), pp. 583-586.
    by J Gorodkin, LJ Heyer, S Brunak, GD Stormo
    posted to structure sequence rna logos alignment by austin on 2008-04-24 22:50:14 as read along with 1 person LeightonP
  • Direct multiplexed measurement of gene expression with color-coded probe pairs.
    Nat Biotechnol (17 February 2008)
    by Gary K K Geiss, Roger E E Bumgarner, Brian Birditt, Timothy Dahl, Naeem Dowidar, Dwayne L L Dunaway, H Perry P Fell, Sean Ferree, Renee D D George, Tammy Grogan, Jeffrey J J James, Malini Maysuria, Jeffrey D D Mitton, Paola Oliveri, Jennifer L L Osborn, Tao Peng, Amber L L Ratcliffe, Philippa J J Webster, Eric H H Davidson, Leroy Hood
    posted to digital measurement quantification rna by austin on 2008-04-16 02:24:47 as read along with 6 people and 2 groups jfr psique jyuh vplagnol GeeSharpMinor shikin parkinson's disease references GeneGo
  • Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations.
    Proc Natl Acad Sci U S A, Vol. 100, No. 26. (23 December 2003), pp. 15310-15315.
    by A Xayaphoummine, T Bucher, F Thalmann, H Isambert
    posted to kinefold kinetics modeling pseudoknot rna by austin on 2008-04-15 18:02:44 as read along with 6 people and 3 groups evaf marcius arcticrasta condon Hosna Kiarostami beta BioinfoCIPF SGU-CIPF
  • RNA folding at elementary step resolution.
    RNA, Vol. 6, No. 3. (March 2000), pp. 325-338.
    by C Flamm, W Fontana, IL Hofacker, P Schuster
    posted to folding kinetics kinfold rna by austin on 2008-04-15 16:44:38 as read along with 4 people arcticrasta ilh mtw Kiarostami
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