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blobbybirdmans library [382 articles]

Nye artikler sendt til blobbybirdmans bibliotek i prioritert rekkefølge .
  • THE EVOLUTION OF GENETIC REGULATORY SYSTEMS IN BACTERIA
    Nat Rev Genet, Vol. 5, No. 3. (March 2004), pp. 169-178.
    by Harley H Mcadams, Balaji Srinivasan, Adam P Arkin
    posted to bacteria evolution gene-regulatory-networks by blobbybirdman on 2008-01-26 15:31:34 as ***** along with 1 person and 1 group balajis Myxo group
  • Orthologous Transcription Factors in Bacteria Have Different Functions and Regulate Different Genes
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e175.
    by Morgan N Price, Paramvir S Dehal, Adam P Arkin
    posted to bacteria gene-regulation orthology transcription-factors by blobbybirdman on 2008-01-26 15:29:10 as ***** along with 6 people and 3 groups dpollard dquest djkt zwang cabbagezs heliopais EisenLab cis-regulatory-evolution Myxo group
  • Understanding of bat wing evolution takes flight
    Genes Dev., Vol. 22, No. 2. (15 January 2008), pp. 121-124.
    by Kimberly L Cooper, Clifford J Tabin
    posted to development evolution genetics by blobbybirdman on 2008-01-22 11:43:36 as ***** along with 1 group cis-regulatory-evolution
  • Evidence for the Adaptive Evolution of Mutation Rates
    Cell, Vol. 101, No. 6. (9 June 2000), pp. 581-584.
    by David Metzgar, Christopher Wills
    posted to evolution genomics mutation-rates by blobbybirdman on 2007-10-29 16:49:01 as ***** along with 1 person and 1 group rebeccamancy ColDyn
  • Ultraconserved elements in the human genome.
    Science, Vol. 304, No. 5675. (28 May 2004), pp. 1321-1325.
    by G Bejerano, M Pheasant, I Makunin, S Stephen, WJ Kent, JS Mattick, D Haussler
    posted to evolutionary-comparisons genomics multiple-alignment by blobbybirdman on 2007-10-16 17:10:30 as ***** along with 13 people and 5 groups pradiptaray karbak barry ujh alexisgallagher bpb aprasad balicea dchughes djkt sujaikumar cisevol fpattyn structural_bioinformatics Bioinformatics G4ID Genetics-of-Gambling cis-regulatory-evolution
  • Functional Analysis of Chicken Sox2 Enhancers Highlights an Array of Diverse Regulatory Elements that Are Conserved in Mammals
    Developmental Cell, Vol. 4, No. 4. (April 2003), pp. 509-519.
    by Masanori Uchikawa, Yoshiko Ishida, Tatsuya Takemoto, Yusuke Kamachi, Hisato Kondoh
    posted to chicken cis-regulatory-elements evolutionary-comparison mammals by blobbybirdman on 2007-10-15 12:49:57 as *****
  • Discovering DNA regulatory elements with bacteria
    Nature Biotechnology, Vol. 23, No. 8., pp. 942-944.
    by Martha L Bulyk
    posted to bacterial binding-site-prediction by blobbybirdman on 2007-10-11 15:25:41 as ***** along with 1 person yevishere
  • DNA microarray technologies for measuring protein-DNA interactions
    Current Opinion in Biotechnology, Vol. 17, No. 4. (August 2006), pp. 422-430.
    by Martha L Bulyk
    posted to binding-site-prediction chip-chip microarray by blobbybirdman on 2007-10-11 15:23:49 as ***** along with 2 people and 2 groups kristallreiner dchughes G4ID Genetics-of-Gambling
  • A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes.
    PLoS Comput Biol, Vol. 1, No. 6. (November 2005)
    by DH Haft, J Selengut, EF Mongodin, KE Nelson
    posted to prokaryotes genomics crispr by blobbybirdman on 2008-04-29 16:45:13 as **** along with 1 person and 1 group saru Myxo group
  • Combinatorial regulation of genes essential for Myxococcus xanthus development involves a response regulator and a LysR-type regulator
    Proceedings of the National Academy of Sciences, Vol. 104, No. 19. (8 May 2007), pp. 7969-7974.
    by Poorna Viswanathan, Toshiyuki Ueki, Sumiko Inouye, Lee Kroos
    posted to response-regulators myxobacteria m_xanthus gene-regulation development by blobbybirdman on 2008-04-29 16:43:21 as **** along with 1 group Myxo group
  • Defining the sequence-recognition profile of DNA-binding molecules
    PNAS, Vol. 103, No. 4. (24 January 2006), pp. 867-872.
    by Christopher L Warren, Natasha C Kratochvil, Karl E Hauschild, Shane Foister, Mary L Brezinski, Peter B Dervan, George N Phillips, Aseem Z Ansari
    posted to dna-binding microarray molecular-biology-techniques transcription-factors by blobbybirdman on 2008-01-24 20:27:11 as **** along with 4 people and 1 group indigoviolet emilyhare samal stsaft EisenLab
  • Functional Specificity of a Hox Protein Mediated by the Recognition of Minor Groove Structure
    Cell, Vol. 131, No. 3. (2 November 2007), pp. 530-543.
    by Rohit Joshi, Jonathan M Passner, Remo Rohs, Rinku Jain, Alona Sosinsky, Michael A Crickmore, Vinitha Jacob, Aneel K Aggarwal, Barry Honig, Richard S Mann
    posted to binding-site-prediction dna-binding hox transcription-factors by blobbybirdman on 2008-01-24 20:01:55 as **** along with 2 people and 1 group cwbrown oelemento EisenLab
  • Animal Evolution: When Did the `Hox System' Arise?
    Current Biology, Vol. 16, No. 14. (25 July 2006), pp. R546-R548.
    by Chris T Amemiya, Gunter P Wagner
    posted to development evolution evolutionary-comparision hox by blobbybirdman on 2008-01-24 17:34:05 as **** along with 1 person BioMaxi
  • Genomic evolution of Hox gene clusters.
    Science, Vol. 313, No. 5795. (29 September 2006), pp. 1918-1922.
    by D Lemons, W McGinnis
    posted to evolution gene-cluster hox rna-interference by blobbybirdman on 2008-01-24 17:32:08 as **** along with 4 people and 1 group nsamways tardigrade mtagaya adepace EisenLab
  • Predicting prokaryotic ecological niches using genome sequence analysis.
    PLoS ONE, Vol. 2, No. 1. (2007)
    by G Suen, BS Goldman, RD Welch
    posted to ecological-niches genomics prokaryotes sequence-analysis by blobbybirdman on 2008-01-24 16:30:32 as **** along with 5 people and 3 groups druvus djkt jdelcampo Thaverkamp kroos iSEEM Microbial-Ecology Myxo group
  • Functional genome annotation through phylogenomic mapping
    Nature Biotechnology, Vol. 23, No. 6. (06 June 2005), pp. 691-698.
    by Balaji S Srinivasan, Nora B Caberoy, Garret Suen, Rion G Taylor, Radhika Shah, Farah Tengra, Barry S Goldman, Anthony G Garza, Roy D Welch
    posted to annotation evolutionary-comparision genome by blobbybirdman on 2008-01-24 16:28:32 as **** along with 11 people and 1 group shoshin operon setar tmmurali pggm aprasad balajis nuke2005 lyongu nedwards kroos Myxo group
  • Bacterial response regulators: versatile regulatory strategies from common domains
    Trends in Biochemical Sciences, Vol. 32, No. 5. (May 2007), pp. 225-234.
    by Rong Gao, Timothy R Mack, Ann M Stock
    posted to bacteria gene-regulation response-regulators by blobbybirdman on 2008-01-24 16:26:13 as **** along with 2 people and 1 group jjray kroos Myxo group
  • MazF, an mRNA Interferase, Mediates Programmed Cell Death during Multicellular Myxococcus Development.
    Cell, Vol. 132, No. 1. (11 January 2008), pp. 55-66.
    by H Nariya, M Inouye
    posted to gene-regulation mrna-interference myxobacteria by blobbybirdman on 2008-01-24 16:24:16 as **** along with 1 person and 1 group kroos Myxo group
  • Noncoding RNA genes.
    Curr Opin Genet Dev, Vol. 9, No. 6. (December 1999), pp. 695-699.
    by SR Eddy
    posted to mirna review by blobbybirdman on 2007-10-16 19:45:55 as **** along with 5 people and 3 groups evaf marcius arcticrasta mtagaya cmm FAB-lab BioinfoCIPF SGU-CIPF
  • Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray
    Genome Res. (4 September 2007), gr.6611807.
    by Housheng He, Jie Wang, Tao Liu, Shirley X Liu, Tiantian Li, Yunfei Wang, Zuwei Qian, Haixia Zheng, Xiaopeng Zhu, Tao Wu, Baochen Shi, Wei Deng, Wei Zhou, Geir Skogerbo, Runsheng Chen
    posted to c_elegans genomics microarray mirna by blobbybirdman on 2007-10-16 19:45:10 as **** along with 2 people cabbagezs xingxu
  • A Computational Pipeline for High- Throughput Discovery of cis-Regulatory Noncoding RNA in Prokaryotes
    PLoS Computational Biology, Vol. 3, No. 7. (1 July 2007), e126.
    by Zizhen Yao, Jeffrey Barrick, Zasha Weinberg, Shane Neph, Ronald Breaker, Martin Tompa, Walter L Ruzzo
    posted to algorithms bioinformatics genomics mirna prokaryotes by blobbybirdman on 2007-10-16 19:42:47 as **** along with 4 people sebastien_vigneau zwang lp2 cabbagezs
  • Comparative genomics at the vertebrate extremes.
    Nat Rev Genet, Vol. 5, No. 6. (June 2004), pp. 456-465.
    by D Boffelli, MA Nobrega, EM Rubin
    posted to evolutionary-comparisons genomics vertebrates by blobbybirdman on 2007-10-16 17:26:51 as **** along with 2 people olympos emptyhb
  • Repeated morphological evolution through cis-regulatory changes in a pleiotropic gene
    Nature, Vol. 440, No. 7087., pp. 1050-1053.
    by Benjamin Prud'homme, Nicolas Gompel, Antonis Rokas, Victoria A Kassner, Thomas M Williams, Shu-Dan Yeh, John R True, Sean B Carroll
    posted to cis-regulatory-elements development evolution gene-regulation by blobbybirdman on 2007-10-16 15:10:13 as **** along with 8 people and 1 group RMGraze dpollard balicea tny adepace ranb Garamonfok emptyhb EisenLab
  • Gene duplication and the adaptive evolution of a classic genetic switch
    Nature, Vol. 449, No. 7163. (11 October 2007), pp. 677-681.
    by Chris T Hittinger, Sean B Carroll
    posted to evolution genomics by blobbybirdman on 2007-10-16 15:08:51 as **** along with 9 people and 2 groups bpcusack clearbluespring skumagai mcphee dpollard dchughes djkt biomcgary kjlipin EisenLab cis-regulatory-evolution
  • Colloquium Papers: Emerging principles of regulatory evolution.
    Proc Natl Acad Sci U S A, Vol. 104 Suppl 1 (15 May 2007), pp. 8605-8612.
    by B Prud'homme, N Gompel, SB Carroll
    posted to cis-regulatory-elements development evolution gene-regulation gene-regulatory-networks morphogenesis by blobbybirdman on 2007-10-16 15:07:30 as **** along with 3 people and 2 groups dpollard cisevol emptyhb EisenLab cis-regulatory-evolution
  • An evolutionary constraint: Strongly disfavored class of change in DNA sequence during divergence of cis-regulatory modules
    Proceedings of the National Academy of Sciences, Vol. 102, No. 33. (16 August 2005), pp. 11769-11774.
    by Andrew R Cameron, Suk H Chow, Kevin Berney, Tsz-Yeung Chiu, Qiu-Autumn Yuan, Alexander Kramer, Argelia Helguero, Andrew Ransick, Mirong Yun, Eric H Davidson
    posted to cis-regulatory-elements evolution evolutionary-comparison non-coding-dna by blobbybirdman on 2007-10-15 12:53:52 as **** along with 2 people and 1 group cisevol emptyhb cis-regulatory-evolution
  • Combinatorial epigenetics, "junk DNA", and the evolution of complex organisms.
    Gene, Vol. 390, No. 1-2. (1 April 2007), pp. 232-242.
    by E Zuckerkandl, G Cavalli
    posted to epigenetics evolution gene-regulation non-coding-dna by blobbybirdman on 2007-10-14 11:55:32 as **** along with 2 people and 1 group margaritis cisevol cis-regulatory-evolution
  • Scanning Human Gene Deserts for Long-Range Enhancers
    Science, Vol. 302, No. 5644. (17 October 2003), 413.
    by Marcelo A Nobrega, Ivan Ovcharenko, Veena Afzal, Edward M Rubin
    posted to evolutionary-comparisons non-coding-dna by blobbybirdman on 2007-10-13 08:28:53 as **** along with 4 people djkt elzodw maximilianh heliopais
  • A supervised hidden Markov model framework for efficiently segmenting tiling array data in transcriptional and ChIP-chip experiments: systematically incorporating validated biological knowledge.
    Bioinformatics (12 October 2006)
    by Jiang Du, Joel S S Rozowsky, Jan O O Korbel, Zhengdong D D Zhang, Thomas E E Royce, Martin H H Schultz, Michael Snyder, Mark Gerstein
    posted to binding-site-prediction chip-chip hmm integration by blobbybirdman on 2007-10-11 14:49:26 as **** along with 7 people and 2 groups xingxu miguel tuck eckart_bindewald djkt SeungjoonOh inesdesantiago Bioinformatics UH - Computational Biology
  • Mapping of transcription factor binding regions in mammalian cells by ChIP: Comparison of array- and sequencing-based technologies
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 898-909.
    by Ghia M Euskirchen, Joel S Rozowsky, Chia-Lin Wei, Wah H Lee, Zhengdong D Zhang, Stephen Hartman, Olof Emanuelsson, Viktor Stolc, Sherman Weissman, Mark B Gerstein, Yijun Ruan, Michael Snyder
    posted to binding-site-predictions chip-chip chip-seq genomics microarray by blobbybirdman on 2007-10-11 14:47:14 as **** along with 6 people and 4 groups isimpson kengg jtaylor ghattem epigenetics idonaldson Bioinformatics Plantandetc UH - Computational Biology BergmanLab
  • Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 787-797.
    by Zhengdong D Zhang, Alberto Paccanaro, Yutao Fu, Sherman Weissman, Zhiping Weng, Joseph Chang, Michael Snyder, Mark B Gerstein
    posted to chip-chip cis-regulatory-elements encode genomics h_sapiens by blobbybirdman on 2007-10-11 14:40:46 as **** along with 7 people and 4 groups inesdesantiago jasonflannick ana Borelli kengg ghattem epigenetics structural_bioinformatics Bioinformatics Plantandetc UH - Computational Biology
  • The ENCODE Project at UC Santa Cruz.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by DJ Thomas, KR Rosenbloom, H Clawson, AS Hinrichs, H Trumbower, BJ Raney, D Karolchik, GP Barber, RA Harte, J Hillman-Jackson, RM Kuhn, BL Rhead, KE Smith, A Thakkapallayil, AS Zweig, , D Haussler, WJ Kent
    posted to encode functional-annotation genomics h_sapiens by blobbybirdman on 2007-10-11 14:35:56 as **** along with 2 groups Bioinformatics UH - Computational Biology
  • Genomics: The personal side of genomics
    Nature, Vol. 449, No. 7162. (4 October 2007), pp. 627-630.
    by Nathan Blow
    posted to future genomics by blobbybirdman on 2007-10-09 18:24:50 as **** along with 6 people tharris dchughes rdiaz wenhan PredictER rschulz
  • Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals
    Nature, Vol. 434, No. 7031. (2005), pp. 338-45.
    by X Xie, J Lu, EJ Kulbokas, TR Golub, V Mootha, Lindblad K Toh, ES Lander, M Kellis
    posted to binding-site-prediction evolutionary-comparision mammals mirna by blobbybirdman on 2007-10-09 17:56:40 as ****
  • Transcriptional regulation and the evolution of development
    Int J Dev Biol, Vol. 47, No. 7-8. (2003), pp. 675-84.
    by GA Wray
    posted to development evolution gene-regulation gene-regulatory-networks by blobbybirdman on 2007-10-09 17:56:40 as ****
  • A comparative genomics approach to prediction of new members of regulons
    Genome Res, Vol. 11, No. 4. (2001), pp. 566-84.
    by K Tan, Moreno G Hagelsieb, Collado J Vides, GD Stormo
    posted to bacterial binding-site-prediction evolutionary-comparisons gene-regulation by blobbybirdman on 2007-10-09 17:56:36 as ****
  • Whole-genome analysis of dorsal-ventral patterning in the Drosophila embryo
    Cell, Vol. 111, No. 5. (2002), pp. 687-701.
    by A Stathopoulos, M Van Drenth, A Erives, M Markstein, M Levine
    posted to development drosophila gene-regulatory-network microarray by blobbybirdman on 2007-10-09 17:56:36 as ****
  • Discovery of novel transcription factor binding sites by statistical overrepresentation
    Nucleic Acids Res, Vol. 30, No. 24. (2002), pp. 5549-60.
    by S Sinha, M Tompa
    posted to algorithms binding-site-predictions bioinformatics expression-clustering s_cerevisiae by blobbybirdman on 2007-10-09 17:56:35 as ****
  • PhyME: a probabilistic algorithm for finding motifs in sets of orthologous sequences
    BMC Bioinformatics, Vol. 5 (2004)
    by S Sinha, M Blanchette, M Tompa
    posted to algorithms binding-site-predictions bioinformatics drosophila evolutionary-comparisons expression-clustering h_sapiens s_cerevisiae statistical by blobbybirdman on 2007-10-09 17:56:35 as ****
  • Transcriptional control in the segmentation gene network of Drosophila
    PLoS Biol, Vol. 2, No. 9. (2004)
    by MD Schroeder, M Pearce, J Fak, H Fan, U Unnerstall, E Emberly, N Rajewsky, ED Siggia, U Gaul
    posted to algorithms binding-site-predictions clustering development drosophila modularity by blobbybirdman on 2007-10-09 17:56:35 as ****
  • Information content of individual genetic sequences
    J Theor Biol, Vol. 189, No. 4. (1997), pp. 427-41.
    by TD Schneider
    posted to binding-site-prediction computational-biology dna-binding genomics information-theory by blobbybirdman on 2007-10-09 17:56:35 as ****
  • Evolution of biological information
    Nucleic Acids Res, Vol. 28, No. 14. (2000), pp. 2794-9.
    by TD Schneider
    posted to evolution genomics information-theory sequence-analysis by blobbybirdman on 2007-10-09 17:56:35 as ****
  • Strong minor groove base conservation in sequence logos implies DNA distortion or base flipping during replication and transcription initiation
    Nucleic Acids Res, Vol. 29, No. 23. (2001), pp. 4881-91.
    by TD Schneider
    posted to computational-biology dna-binding information-theory by blobbybirdman on 2007-10-09 17:56:35 as ****
  • What can we learn from noncoding regions of similarity between genomes?
    BMC Bioinformatics, Vol. 5 (2004)
    by TA Down, TJ Hubbard
    posted to evolutionary-comparisions machine-learning rvm by blobbybirdman on 2007-10-09 17:56:18 as **** along with 1 group UH - Computational Biology
  • The evolutionary origin of complex features.
    Nature, Vol. 423, No. 6936. (8 May 2003), pp. 139-144.
    by RE Lenski, C Ofria, RT Pennock, C Adami
    posted to alife complexity evolution by blobbybirdman on 2007-10-09 17:12:04 as **** along with 9 people and 2 groups camster karimlakhani PeterCollins alexisgallagher cmunson balicea rsantana RobMills ms609 dbk-lab MACLab
  • Regulation of dev, an Operon That Includes Genes Essential for Myxococcus xanthus Development and CRISPR-Associated Genes and Repeats.
    J Bacteriol, Vol. 189, No. 10. (May 2007), pp. 3738-3750.
    by P Viswanathan, K Murphy, B Julien, AG Garza, L Kroos
    posted to development gene-regulation m_xanthus by blobbybirdman on 2007-10-09 17:06:18 as **** along with 1 person saru
  • Developmental cheating in the social bacterium Myxococcus xanthus.
    Nature, Vol. 404, No. 6778. (6 April 2000), pp. 598-601.
    by GJ Velicer, L Kroos, RE Lenski
    posted to development m_xanthus by blobbybirdman on 2007-10-09 17:04:50 as **** along with 1 person lingchong
  • Maintenance of transposon-free regions throughout vertebrate evolution
    BMC Genomics, Vol. 8 (20 December 2007), 470.
    by Cas Simons, Igor V Makunin, Michael Pheasant, John S Mattick
    posted to evolution transposons vertebrates by blobbybirdman on 2008-01-24 20:35:49 as *** along with 2 people and 2 groups cisevol idonaldson cis-regulatory-evolution BergmanLab
  • Non-additivity in protein-DNA binding.
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2254-2263.
    by RA O'Flanagan, G Paillard, R Lavery, AM Sengupta
    posted to binding-site-prediction bioinformatics svm by blobbybirdman on 2008-01-24 20:09:14 as *** along with 2 people and 1 group nklee reidy UH - Computational Biology
  • The genesis and evolution of homeobox gene clusters
    Nature Reviews Genetics, Vol. 6, No. 12. (10 November 2005), pp. 881-892.
    by Jordi Garcia-Fernàndez
    posted to development evolution gene-cluster homeobox by blobbybirdman on 2008-01-24 19:59:33 as *** along with 7 people and 2 groups brant balicea emilyhare nickluscombe BioMaxi timflutre blackm0k EisenLab EBI-regulation
    • NB: Du kan sitere denne siden som: http://www.citeulike.org/user/blobbybirdman/order/to_read

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