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cambrays library [47 articles]

Nye artikler sendt til cambrays bibliotek.
  • Why High-error-rate Random Mutagenesis Libraries are Enriched in Functional and Improved Proteins
    Journal of Molecular Biology, Vol. 350, No. 4. (22 July 2005), pp. 806-816.
    by Allan D Drummond, Brent L Iverson, George Georgiou, Frances H Arnold
    posted to pcr mutation_rate directed_evolution by cambray on 2008-08-26 13:09:17 as **
  • Evolution favors protein mutational robustness in sufficiently large populations
    BMC Biology, Vol. 5, No. 1. (2007)
    by Jesse Bloom, Zhongyi Lu, David Chen, Alpan Raval, Ophelia Venturelli, Frances Arnold
    posted to robustness experimental_evolution evolvability adaptation by cambray on 2008-08-26 12:57:38 as ** along with 3 people bpcusack cdeane Pao-Yang
  • Mistranslation-Induced Protein Misfolding as a Dominant Constraint on Coding-Sequence Evolution
    Cell, Vol. 134, No. 2. (25 July 2008), pp. 341-352.
    by Allan D Drummond, Claus O Wilke
    posted to usage evolution codon by cambray on 2008-08-12 13:45:51 as ** along with 3 people zwang bpcusack jjray
  • De Novo Computational Design of Retro-Aldol Enzymes
    Science, Vol. 319, No. 5868. (7 March 2008), pp. 1387-1391.
    by Lin Jiang, Eric A Althoff, Fernando R Clemente, Lindsey Doyle, Daniela Rothlisberger, Alexandre Zanghellini, Jasmine L Gallaher, Jamie L Betker, Fujie Tanaka, Carlos F Barbas, Donald Hilvert, Kendall N Houk, Barry L Stoddard, David Baker
    posted to protein design by cambray on 2008-08-12 13:40:33 as ** along with 12 people and 3 groups joseph_x_zhou ucbcjbm barry aalibes jwm aprasad dgront zwang sobolevnrm davidlott msuarezdiez scienbox McCammon structural_bioinformatics baker-group
  • Minigene-like inhibition of protein synthesis mediated by hungry codons near the start codon
    Nucl. Acids Res., Vol. 36, No. 13. (1 August 2008), pp. 4233-4241.
    by Eva Jacinto-Loeza, Serafin Vivanco-Dominguez, Gabriel Guarneros, Javier Hernandez-Sanchez
    posted to usage regulation codon by cambray on 2008-08-12 11:27:46 as **
  • Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation.
    Nature reviews. Genetics (1 July 2008)
    by Luis López-Maury, Samuel Marguerat, Jürg Bähler
    posted to stress regulation evolution adaptation by cambray on 2008-08-08 10:22:11 as ***** along with 6 people bpcusack klo jmjimenez Ema jjray bootsy
  • The role of SOS boxes in enteric bacteriocin regulation.
    Microbiology (Reading, England), Vol. 154, No. Pt 6. (June 2008), pp. 1783-1792.
    by O Gillor, JA Vriezen, MA Riley
    posted to stress sos regulation by cambray on 2008-08-08 10:09:36 as **
  • Bacterial contingency loci: the role of simple sequence DNA repeats in bacterial adaptation.
    Annual review of genetics, Vol. 40 (2006), pp. 307-333.
    by R Moxon, C Bayliss, D Hood
    posted to contingency_loci adaptation by cambray on 2008-08-07 15:15:04 as **
  • Adaptive evolution of highly mutable loci in pathogenic bacteria.
    Current biology : CB, Vol. 4, No. 1. (1 January 1994), pp. 24-33.
    by ER Moxon, PB Rainey, MA Nowak, RE Lenski
    posted to evolvability evolution adaptation by cambray on 2008-08-07 15:11:42 as *****
  • Antigenic variation by Borrelia hermsii occurs through recombination between extragenic repetitive elements on linear plasmids
    Molecular Microbiology, Vol. 60, No. 6. (June 2006), pp. 1329-1343.
    by Dai, Qiyuan, Restrepo, I Blanca, Porcella, F Stephen, Raffel, J Sandra, Schwan, G Tom, Barbour, G Alan
    posted to antigenic_variation adaptation by cambray on 2008-08-07 14:26:28 as **
  • Bacteria as modular organisms.
    Annual review of microbiology, Vol. 52 (1998), pp. 105-126.
    by JH Andrews
    posted to modularity adaptation by cambray on 2008-08-06 16:21:23 as *****
  • Quantitative whole-genome analysis of DNA-protein interactions by in vivo methylase protection in E. coli.
    Nature biotechnology, Vol. 16, No. 6. (June 1998), pp. 566-571.
    by S Tavazoie, GM Church
    posted to switch regulation methylation by cambray on 2008-07-31 16:48:49 as **** along with 1 person yoonk
  • notes Across the Curious Parallel of Language and Species Evolution
    PLoS Biology, Vol. 6, No. 7. (1 July 2008), e186.
    by John Whitfield
    posted to language evolution culture by cambray on 2008-07-31 10:31:58 as ** along with 3 people bpcusack bootsy pmcarlton
  • Epigenetic regulation of translation reveals hidden genetic variation to produce complex traits.
    Nature, Vol. 431, No. 7005. (9 September 2004), pp. 184-187.
    by HL True, I Berlin, SL Lindquist
    posted to yeast prion evolution adaptation by cambray on 2008-07-31 10:27:06 as ***** along with 2 people rklancer pat
  • Cloning and analysis of a locus (mcr) involved in mitomycin C resistance in Streptomyces lavendulae.
    Journal of bacteriology, Vol. 176, No. 14. (July 1994), pp. 4448-4454.
    by PR August, MC Flickinger, DH Sherman
    posted to sos antibiotic by cambray on 2008-07-08 11:08:30 as **
  • Molecular basis of mitomycin C resistance in streptomyces: structure and function of the MRD protein.
    Structure (London, England : 1993), Vol. 10, No. 7. (July 2002), pp. 933-942.
    by TW Martin, Z Dauter, Y Devedjiev, P Sheffield, F Jelen, M He, DH Sherman, J Otlewski, ZS Derewenda, U Derewenda
    posted to no-tag by cambray on 2008-07-04 13:33:37 as **
  • notes Characterization of a quinone reductase activity for the mitomycin C binding protein (MRD): Functional switching from a drug-activating enzyme to a drug-binding protein.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 3. (30 January 2001), pp. 926-931.
    by M He, PJ Sheldon, DH Sherman
    posted to sos evolution antibiotic by cambray on 2008-07-04 13:28:38 as read
  • Mitomycin resistance in Streptomyces lavendulae includes a novel drug-binding-protein-dependent export system.
    Journal of bacteriology, Vol. 181, No. 8. (April 1999), pp. 2507-2512.
    by PJ Sheldon, Y Mao, M He, DH Sherman
    posted to sos antibiotic by cambray on 2008-07-04 13:27:34 as **
  • Characterization of a mitomycin-binding drug resistance mechanism from the producing organism, Streptomyces lavendulae.
    Journal of bacteriology, Vol. 179, No. 5. (March 1997), pp. 1796-1804.
    by PJ Sheldon, DA Johnson, PR August, HW Liu, DH Sherman
    posted to sos antibiotic by cambray on 2008-07-04 11:45:33 as read
  • notes Mechanistic approaches to the study of evolution: the functional synthesis
    Nature Reviews Genetics, Vol. 8, No. 9., pp. 675-688.
    by Antony M Dean, Joseph W Thornton
    posted to experimental_evolution evolution by cambray on 2008-06-30 15:23:18 as read along with 3 people and 2 groups dchughes sebastien_vigneau zwang G4ID Genetics-of-Gambling
  • LexA cleavage is required for CTX prophage induction.
    Mol Cell, Vol. 17, No. 2. (21 January 2005), pp. 291-300.
    by M Quinones, HH Kimsey, MK Waldor
    posted to stress sos by cambray on 2008-06-27 14:58:34 as read along with 1 person martainn
  • SOS response promotes horizontal dissemination of antibiotic resistance genes.
    Nature, Vol. 427, No. 6969. (1 January 2004), pp. 72-74.
    by JW Beaber, B Hochhut, MK Waldor
    posted to no-tag by cambray on 2008-06-27 14:35:02 as read
  • Orientational control is an efficient control mechanism for phase switching in the E. coli fim system.
    Journal of theoretical biology, Vol. 244, No. 3. (7 February 2007), pp. 541-551.
    by D Chu, IC Blomfield
    posted to no-tag by cambray on 2008-06-24 13:32:23 as **
  • notes Epigenetic gene regulation in the bacterial world.
    Microbiol Mol Biol Rev, Vol. 70, No. 3. (September 2006), pp. 830-856.
    by J Casadesús, D Low
    posted to regulation phase_variation evolution epigenetic convergence by cambray on 2008-06-24 13:21:39 as ** along with 2 people jasonflannick knaseanka
  • notes The dinB gene encodes a novel E. coli DNA polymerase, DNA pol IV, involved in mutagenesis.
    Molecular cell, Vol. 4, No. 2. (August 1999), pp. 281-286.
    by J Wagner, P Gruz, SR Kim, M Yamada, K Matsui, RP Fuchs, T Nohmi
    posted to sos poliv mutation_rate by cambray on 2008-06-24 13:17:49 as read
  • Adaptation increases the likelihood of diversification in an experimental bacterial lineage.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 5. (5 February 2008), pp. 1585-1589.
    by CC Spencer, J Tyerman, M Bertrand, M Doebeli
    posted to adaptation by cambray on 2008-06-24 13:13:53 as ****
  • Vibrio splendidus as the source of plasmid-mediated QnrS-like quinolone resistance determinants.
    Antimicrobial agents and chemotherapy, Vol. 51, No. 7. (July 2007), pp. 2650-2651.
    by V Cattoir, L Poirel, D Mazel, CJ Soussy, P Nordmann
    posted to vibrio quinolone antibiotic by cambray on 2008-06-20 10:24:15 as read
  • New qnr Gene Cassettes Associated with Superintegron Repeats in Vibrio cholerae O1
    Emerg Infect Dis. (2008)
    by Érica L Fonseca, Fernanda, Verônica V Vieira, Ana CP Vicente
    posted to vibrio superintegron quinolone cholerae antibiotic by cambray on 2008-06-20 10:11:08 as read
  • Survey of in vitro susceptibilities of Vibrio cholerae O1 and O139 to antimicrobial agents.
    Antimicrobial agents and chemotherapy, Vol. 39, No. 1. (January 1995), pp. 241-244.
    by T Yamamoto, GB Nair, MJ Albert, CC Parodi, Y Takeda
    posted to vibrio quinolone antibiotic by cambray on 2008-06-20 10:06:18 as read
  • Emergence of plasmid-mediated resistance to quinolones in Enterobacteriaceae
    J. Antimicrob. Chemother., Vol. 56, No. 3. (1 September 2005), pp. 463-469.
    by Patrice Nordmann, Laurent Poirel
    posted to vibrio antibiotic by cambray on 2008-06-20 08:51:54 as read
  • Vibrionaceae as a possible source of Qnr-like quinolone resistance determinants
    Journal of Antimicrobial Chemotherapy, Vol. 56, No. 6. (December 2005), pp. 1118-1121.
    by Laurent Poirel, Alain Liard, Jose-Manuel Rodriguez-Martinez, Patrice Nordmann
    posted to vibrio quinolone antibiotic by cambray on 2008-06-19 15:52:46 as ***
  • Stress-induced mutagenesis in bacteria.
    Crit Rev Biochem Mol Biol, Vol. 42, No. 5. (t 2007), pp. 373-397.
    by PL Foster
    posted to sos evolvability by cambray on 2008-06-17 15:22:44 as ***
  • Upstream of the SOS response: figure out the trigger.
    Trends in microbiology, Vol. 14, No. 10. (October 2006), pp. 421-423.
    by A Aertsen, CW Michiels
    posted to ta_system stress sos expression evolvability by cambray on 2008-06-17 15:11:32 as **
  • Characterization of a higBA toxin-antitoxin locus in Vibrio cholerae.
    Journal of bacteriology, Vol. 189, No. 2. (January 2007), pp. 491-500.
    by PP Budde, BM Davis, J Yuan, MK Waldor
    posted to ta_system by cambray on 2008-06-17 14:45:01 as ***
  • Defossiling Fuel: How Synthetic Biology Can Transform Biofuel Production
    ACS Chem. Biol., Vol. 3, No. 1. (18 January 2008), pp. 13-16.
    by David Savage, , Jeffrey Way, Pamela A Silver
    posted to no-tag by cambray on 2008-06-17 14:43:08 as *** along with 4 people and 1 group grahamc austin dbikard SciNika SynBioSys
  • notes What Is the Benefit to Escherichia coli of Having Multiple Toxin-Antitoxin Systems in Its Genome?
    J Bacteriol, Vol. 189, No. 17. (September 2007), pp. 6101-6108.
    by V Tsilibaris, G Maenhaut-Michel, N Mine, L Van Melderen
    posted to ta_system stress by cambray on 2008-06-16 17:14:02 as ** along with 1 person madhadron
  • Antigenic variation in trypanosomes: enhanced phenotypic variation in a eukaryotic parasite.
    Advances in parasitology, Vol. 49 (2001), pp. 1-70.
    by JD Barry, R McCulloch
    posted to recombination phase_variation expression evolvability evolution adaptation by cambray on 2008-06-13 09:24:56 as ****
  • notes Timescales of Genetic and Epigenetic Inheritance
    Cell, Vol. 128, No. 4. (23 February 2007), pp. 655-668.
    by Oliver J Rando, Kevin J Verstrepen
    posted to robustness phase_variation hysteresis evolvability epistasis contingency_loci canalization adaptation by cambray on 2008-06-11 14:56:47 as read along with 2 people jasonflannick olympos
  • notes Side effects may include evolution
    Nature Medicine, Vol. 12, No. 8., pp. 890-891.
    by Ryan T Cirz, Neill Gingles, Floyd E Romesberg
    posted to evolvability antibiotic adaptation by cambray on 2008-06-11 14:45:28 as *****
  • Inhibition of mutation and combating the evolution of antibiotic resistance.
    PLoS Biol, Vol. 3, No. 6. (June 2005)
    by RT Cirz, JK Chin, DR Andes, V de Crécy-Lagard, WA Craig, FE Romesberg
    posted to quinolone poliv mutation_rate mouse evolvability evolution double_strand_break antibiotic adaptation by cambray on 2008-06-11 14:42:20 as **** along with 2 people rklancer christiw
  • MICROBIAL GENETICS: Embrace your inhibitions!
    Nature Reviews Genetics, Vol. 6, No. 7. (01 July 2005), pp. 516-516.
    by Nick Campbell
    posted to sos evolution double_strand_break antibiotic adaptation by cambray on 2008-06-11 14:39:06 as ***
  • notes Evolving responsively: adaptive mutation.
    Nat Rev Genet, Vol. 2, No. 7. (July 2001), pp. 504-515.
    by SM Rosenberg
    posted to transletion sos replication poliv mutation_rate lac evolvability evolution double_strand_break adaptation by cambray on 2008-06-11 08:23:12 as read along with 8 people and 4 groups rklancer dayjm bala livingthingdan christiw grisogono rebeccamancy suizan DSTO-CAS DictyosteliumGroup livingthing ColDyn
  • notes Integration of Horizontally Transferred Genes into Regulatory Interaction Networks Takes Many Million Years
    Mol Biol Evol (24 December 2007), msm283.
    by Martin J Lercher, Csaba Pal
    posted to regulatory_network regulation protein_network evolution by cambray on 2008-06-10 13:53:24 as read along with 4 people and 1 group cisevol marcio dquest cjeans cis-regulatory-evolution
  • Information Theory Primer
    by Thomas D Schneider
    posted to logo information binding_site by cambray on 2008-06-08 12:20:55 as read
  • Information theory in molecular biology
    (5 May 2004)
    by Christoph Adami
    posted to information by cambray on 2008-06-08 11:59:44 as **** along with 1 person bayesian
  • notes Inaugural Article: Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli
    Proceedings of the National Academy of Sciences (4 June 2008), 0803151105.
    by Zachary D Blount, Christina Z Borland, Richard E Lenski
    posted to mutation_rate experimental_evolution epistasis ecological_diversification contingency by cambray on 2008-06-06 05:42:21 as read along with 7 people and 1 group jjray adriandefroment MarioPaolucci jobriath OriginalLurch dbikard skumagai Bacterial Genome Plasticity
  • How do RNA folding algorithms work?
    Nature Biotechnology, Vol. 22, No. 11., 1457.
    by Sean R Eddy
    posted to fold rna by cambray on 2008-02-25 20:27:38 as read along with 10 people and 2 groups austin evaf marcius tardigrade mtagaya 3times3 cthachuk magnolia maralena guxiyou BioinfoCIPF SGU-CIPF
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