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chad_davis' proj_disocons [138 articles]

Artikler nylig sendt til chad_davis' bibliotek klassifisert med nøkkelordet proj_disocons. You can also see everyone's proj_disocons.
  • POIMs: positional oligomer importance matrices--understanding support vector machine-based signal detectors
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i6-14.
    by Soren Sonnenburg, Alexander Zien, Petra Philips, Gunnar Ratsch
    posted to algorithm classification ensemble proj_credo proj_disocons by chad_davis on 2008-07-05 16:29:44 as read along with 1 person papamicd
  • A robust approach for analyzing a heterogeneous structural ensemble
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by David F Lowry, Andrew C Hausrath, Gary W Daughdrill
    posted to algorithm clustering complexes disorder evolution proj_disocons structure by chad_davis on 2008-07-01 12:08:08 as ***
  • The role of disorder in interaction networks: a structural analysis
    Mol Syst Biol, Vol. 4 (25 March 2008)
    by Philip M Kim, Andrea Sboner, Yu Xia, Mark Gerstein
    posted to disorder networks proj_disocons structure yeast binding by chad_davis on 2008-06-30 10:59:42 as **** along with 5 people zwang bootsy biomcgary maralena phoenixzxl
  • Intrinsic disorder prediction from the analysis of multiple protein fold recognition models.
    Bioinformatics (Oxford, England) (25 June 2008)
    by Liam JJ Mcguffin
    posted to algorithm classification data_integration disorder ensemble feature_selection proj_disocons structure web_service by chad_davis on 2008-06-29 10:59:50 as read
  • Intrinsically Disordered Proteins in Human Diseases: Introducing the D(2) Concept.
    Annual review of biophysics, Vol. 37 (9 June 2008), pp. 215-246.
    by Vladimir NN Uversky, Christopher JJ Oldfield, Keith
    posted to disease disorder gene_regulation proj_disocons review structure binding by chad_davis on 2008-06-29 10:56:16 as *** along with 1 person allmensch
  • Intrinsic protein disorder in complete genomes.
    Genome informatics. Workshop on Genome Informatics, Vol. 11 (2000), pp. 161-171.
    by AK Dunker, Z Obradovic, P Romero, EC Garner, CJ Brown
    posted to annotation disorder proj_disocons review structure by chad_davis on 2008-06-17 16:47:01 as **** along with 1 person allmensch
  • Role of intrinsic disorder in transient interactions of hub proteins.
    Proteins, Vol. 66, No. 4. (1 March 2007), pp. 761-765.
    by GP Singh, M Ganapathi, D Dash
    posted to complexes disorder networks proj_disocons binding by chad_davis on 2008-06-15 13:40:59 as ****
  • POODLE-S: Web application for predicting protein disorder by using physicochemical features and reduced amino acid set of a position specific scoring matrix.
    Bioinformatics (28 June 2007)
    by Kana Shimizu, Shuichi Hirose, Tamotsu Noguchi
    posted to algorithm classification disorder feature_selection proj_disocons web_service by chad_davis on 2008-04-28 15:27:18 as *
  • Prediction of disordered regions in proteins based on the meta approach
    Bioinformatics (20 April 2008), btn195.
    by Takashi Ishida, Kengo Kinoshita
    posted to algorithm classification disorder ensemble proj_disocons structure by chad_davis on 2008-04-28 09:47:26 as read along with 1 person and 1 group niallhaslam structural_bioinformatics
  • Protein disorder prediction at multiple levels of sensitivity and specificity.
    BMC genomics, Vol. 9 Suppl 1 (2008)
    by J Hecker, JY Yang, J Cheng
    posted to algorithm classification disorder proj_disocons review structure by chad_davis on 2008-04-20 11:16:25 as *****
  • Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners.
    BMC genomics, Vol. 9 Suppl 1 (2008)
    by CJ Oldfield, J Meng, JY Yang, MQ Yang, VN Uversky, AK Dunker
    posted to disorder networks proj_disocons binding by chad_davis on 2008-04-20 11:11:10 as *** along with 1 person Evangelia
  • Prediction of intrinsic disorder and its use in functional proteomics.
    Methods Mol Biol, Vol. 408 (2007), pp. 69-92.
    by VN Uversky, P Radivojac, LM Iakoucheva, Z Obradovic, AK Dunker
    posted to classification disorder proj_disocons review structure by chad_davis on 2008-03-10 08:38:13 as *****
  • Mechanism of induced folding: Both folding before binding and binding before folding can be realized in staphylococcal nuclease mutants
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Masayoshi Onitsuka, Hironari Kamikubo, Yoichi Yamazaki, Mikio Kataoka
    posted to chemistry disorder structure proj_disocons binding by chad_davis on 2008-02-11 15:04:12 as ****
  • Fuzzy complexes: polymorphism and structural disorder in protein-protein interactions.
    Trends Biochem Sci (26 November 2007)
    by Peter Tompa, Monika Fuxreiter
    posted to proj_disocons classification complexes disorder review structure binding by chad_davis on 2007-12-09 20:23:11 as ****
  • What's wrong with Bonferroni adjustments.
    BMJ, Vol. 316, No. 7139. (18 April 1998), pp. 1236-1238.
    by TV Perneger
    posted to proj_credo proj_disocons review statistics validation by chad_davis on 2007-11-20 13:01:43 as read along with 1 person StephenWeigand
  • Structural disorder serves as a weak signal for intracellular protein degradation.
    Proteins (14 November 2007)
    by P Tompa, J Prilusky, I Silman, JLL Sussman
    posted to disorder structure proj_disocons by chad_davis on 2007-11-19 09:03:38 as *** along with 4 people camster kluck higueruelo allmensch
  • Assessment of disorder predictions in CASP7.
    Proteins (6 August 2007)
    by Lorenza Bordoli, Florian Kiefer, Torsten Schwede
    posted to algorithm proj_disocons disorder review structure by chad_davis on 2007-11-16 14:09:42 as *****
  • Structural disorder promotes assembly of protein complexes
    BMC Structural Biology, Vol. 7 (08 October 2007), 65.
    by Hedi Hegyi, Eva Schad, Peter Tompa
    posted to proj_disocons complexes disorder structure yeast binding by chad_davis on 2007-10-15 09:07:57 as *****
  • Inferring function using patterns of native disorder in proteins.
    PLoS Comput Biol, Vol. 3, No. 8. (24 August 2007)
    by A Lobley, MB Swindells, CA Orengo, DT Jones
    posted to proj_disocons disorder by chad_davis on 2007-09-25 13:23:31 as *** along with 1 person niallhaslam
  • Between Order and Disorder in Protein Structures: Analysis of "Dual Personality" Fragments in Proteins.
    Structure, Vol. 15, No. 9. (11 September 2007), pp. 1141-1147.
    by Ying Zhang, Boguslaw Stec, Adam Godzik
    posted to proj_disocons disorder by chad_davis on 2007-09-24 17:21:12 as *** along with 2 people bicko cactus
  • Another window into disordered protein function.
    Structure, Vol. 15, No. 9. (September 2007), pp. 1026-1028.
    by AK Dunker
    posted to proj_disocons disorder review structure by chad_davis on 2007-09-24 17:17:30 as *** along with 1 person bicko
  • Natively unstructured regions in proteins identified from contact predictions
    Bioinformatics, Vol. 23, No. 18. (15 September 2007), pp. 2376-2384.
    by Avner Schlessinger, Marco Punta, Burkhard Rost
    posted to algorithm proj_disocons disorder structure by chad_davis on 2007-09-18 14:04:04 as **** along with 1 person niallhaslam
  • POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions
    Bioinformatics, Vol. 23, No. 16. (15 August 2007), pp. 2046-2053.
    by Shuichi Hirose, Kana Shimizu, Satoru Kanai, Yutaka Kuroda, Tamotsu Noguchi
    posted to proj_disocons classification disorder feature_selection by chad_davis on 2007-09-13 16:08:33 as *****
  • Machine Learning and Its Applications to Biology.
    PLoS Comput Biol, Vol. 3, No. 6. (29 June 2007)
    by Adi LL Tarca, Vincent JJ Carey, Xue, Roberto Romero, Sorin Drăghici
    posted to algorithm proj_credo proj_disocons proj_stabperf classification clustering review statistics by chad_davis on 2007-09-03 15:43:35 as ** along with 4 people and 1 group jfr rsantana gsiwo groepl Bioinformatics
  • Intrinsic disorder in yeast transcriptional regulatory network.
    Proteins, Vol. 68, No. 3. (15 August 2007), pp. 602-605.
    by GP Singh, D Dash
    posted to disorder gene_regulation networks yeast proj_disocons binding by chad_davis on 2007-08-08 10:30:42 as *** along with 1 person kfm9876
  • Will my protein crystallize? A sequence-based predictor.
    Proteins, Vol. 62, No. 2. (1 February 2006), pp. 343-355.
    by P Smialowski, T Schmidt, J Cox, A Kirschner, D Frishman
    posted to classification feature_selection structure algorithm proj_disocons by chad_davis on 2007-06-07 16:37:02 as **** along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
  • Protein solubility: sequence based prediction and experimental verification.
    Bioinformatics (6 December 2006)
    by Pawel Smialowski, Antonio, Aleksandra Mikolajka, Tobias Girschick, Tad AA Holak, Dmitrij Frishman
    posted to algorithm classification web_service proj_disocons by chad_davis on 2007-06-07 16:20:04 as **** along with 3 people jyuh bobychan girschick
  • Honing the in silico toolkit for detecting protein disorder
    Acta Crystallographica Section D Biological Crystallography, Vol. 62, No. 10D. (October 2006), pp. 1260-1266.
    by RM Esnouf, R Hamer, JL Sussman, I Silman, D Trudgian, ZR Yang, J Prilusky
    posted to disorder review structure proj_disocons by chad_davis on 2007-05-29 09:39:34 as ****
  • Local structural disorder imparts plasticity on linear motifs.
    Bioinformatics (25 March 2007)
    by Monika Fuxreiter, Peter Tompa, István Simon
    posted to disorder structure proj_disocons binding by chad_davis on 2007-04-30 16:46:19 as ****
  • DisProt: the Database of Disordered Proteins.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by M Sickmeier, JA Hamilton, T Legall, V Vacic, MS Cortese, A Tantos, B Szabo, P Tompa, J Chen, VN Uversky, Z Obradovic, AK Dunker
    posted to disorder structure database proj_disocons by chad_davis on 2007-04-23 15:04:21 as ***** along with 3 people higueruelo choonpeng allmensch
  • The interplay between structure and function in intrinsically unstructured proteins
    FEBS Letters, Vol. 579, No. 15. (13 June 2005), pp. 3346-3354.
    by Peter Tompa
    posted to disorder proj_disocons by chad_davis on 2007-04-22 12:40:04 as ***
  • Large systematic errors compromise quantitation of intrinsically unstructured proteins.
    Anal Biochem, Vol. 360, No. 2. (15 January 2007), pp. 321-323.
    by E Szollosi, E Hazy, C Szasz, P Tompa
    posted to disorder review validation proj_disocons by chad_davis on 2007-04-22 12:37:04 as ***
  • notes SMART 5: domains in the context of genomes and networks.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by I Letunic, RR Copley, B Pils, S Pinkert, J Schultz, P Bork
    posted to classic classification disorder embl web_service proj_disocons by chad_davis on 2007-04-02 19:40:37 as *** along with 1 person siebertm
  • notes Knowledge discovery and knowledge validation in intensive care.
    Artif Intell Med, Vol. 19, No. 3. (July 2000), pp. 225-249.
    by K Morik, M Imhoff, P Brockhausen, T Joachims, U Gather, M Imboff
    posted to validation classification algorithm proj_disocons by chad_davis on 2007-01-25 19:38:46 as **
  • ROC with confidence - a Perl program for receiver operator characteristic curves.
    Comput Methods Programs Biomed, Vol. 64, No. 2. (February 2001), pp. 133-136.
    by HA Kestler
    posted to statistics toolkit proj_disocons by chad_davis on 2007-01-24 17:22:38 as *
  • Predicting the insurgence of human genetic diseases associated to single point protein mutations with support vector machines and evolutionary information.
    Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2729-2734.
    by E Capriotti, R Calabrese, R Casadio
    posted to proj_disocons by chad_davis on 2007-01-10 09:17:13 as read along with 2 people and 1 group OriginalLurch ramensky clab
  • The importance of intrinsic disorder for protein phosphorylation.
    Nucleic Acids Res, Vol. 32, No. 3. (2004), pp. 1037-1049.
    by LM Iakoucheva, P Radivojac, CJ Brown, TR O'Connor, JG Sikes, Z Obradovic, AK Dunker
    posted to structure proj_disocons by chad_davis on 2007-01-09 17:21:45 as **** along with 1 person niallhaslam
  • notes PHD -- an automatic mail server for protein secondary structure prediction.
    Comput Appl Biosci, Vol. 10, No. 1. (February 1994), pp. 53-60.
    by B Rost, C Sander, R Schneider
    posted to classic classification structure web_service proj_disocons by chad_davis on 2007-01-09 14:19:05 as * along with 2 people j3xucite dgront
  • Protein secondary structure prediction based on position-specific scoring matrices.
    J Mol Biol, Vol. 292, No. 2. (17 September 1999), pp. 195-202.
    by DT Jones
    posted to classic classification structure proj_disocons by chad_davis on 2007-01-08 13:56:07 as * along with 9 people wouterboomsma j3xucite dgront leelarcombe rabio rph dandaman saunders granujilla
  • notes Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.
    Biopolymers, Vol. 22, No. 12. (December 1983), pp. 2577-2637.
    by W Kabsch, C Sander
    posted to classic structure proj_disocons by chad_davis on 2007-01-08 09:24:38 as read along with 15 people kaarsinogen lna wouterboomsma penka ffranca dgront choonpeng leelarcombe rabio gisle medic0747 martainn chgjb mschofie marti
  • Exploring bias in the Protein Data Bank using contrast classifiers.
    Pac Symp Biocomput (2004), pp. 435-446.
    by K Peng, Z Obradovic, S Vucetic
    posted to statistics validation database proj_disocons by chad_davis on 2007-01-04 16:21:34 as ****
  • Spritz: a server for the prediction of intrinsically disordered regions in protein sequences using kernel machines
    (2007)
    by A Vullo, O Bortolami, G Pollastri, S Tosatto
    posted to classification disorder proj_disocons by chad_davis on 2007-01-02 11:06:18 as *
  • notes Practical implementation of nonlinear time series methods: The TISEAN package.
    Chaos, Vol. 9, No. 2. (June 1999), pp. 413-435.
    by Rainer Hegger, Holger Kantz, Thomas Schreiber
    posted to algorithm toolkit proj_disocons proj_credo by chad_davis on 2007-01-01 18:12:18 as *
  • Consenus Disorder Prediction
    (2005)
    by Burnham
    posted to classification disorder proj_disocons by chad_davis on 2006-12-31 14:55:18 as read
  • Coupling of folding and binding for unstructured proteins.
    Curr Opin Struct Biol, Vol. 12, No. 1. (February 2002), pp. 54-60.
    by HJ Dyson, PE Wright
    posted to disorder proj_disocons binding by chad_davis on 2006-12-24 09:30:38 as *** along with 2 people allmensch cactus
  • Intrinsically disordered protein.
    J Mol Graph Model, Vol. 19, No. 1. (2001), pp. 26-59.
    by AK Dunker, JD Lawson, CJ Brown, RM Williams, P Romero, JS Oh, CJ Oldfield, AM Campen, CM Ratliff, KW Hipps, J Ausio, MS Nissen, R Reeves, C Kang, CR Kissinger, RW Bailey, MD Griswold, W Chiu, EC Garner, Z Obradovic
    posted to disorder structure proj_disocons binding by chad_davis on 2006-12-24 09:23:43 as **** along with 1 person allmensch
  • Bioinformatics for Geneticists
    (2003)
    by MJ Betts, RB Russell
    edited by MR Barnes, IC Gray
    posted to chemistry classic embl review structure proj_disocons by chad_davis on 2006-12-23 15:59:10 as ****
  • Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins.
    BMC Bioinformatics, Vol. 5 (22 June 2004)
    by F Diella, S Cameron, C Gemuend, R Linding, A Via, B Kuster, Sicheritz T Ponten, N Blom, TJ Gibson
    posted to chemistry embl proj_disocons by chad_davis on 2006-12-23 12:13:07 as *** along with 2 people renatomilani Evangelia
  • ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3625-3630.
    by P Puntervoll, R Linding, C Gemuend, Chabanis S Davidson, M Mattingsdal, S Cameron, DM Martin, G Ausiello, B Brannetti, A Costantini, F Ferre, V Maselli, A Via, G Cesareni, F Diella, Superti G Furga, L Wyrwicz, C Ramu, C Mcguigan, R Gudavalli, I Letunic, P Bork, L Rychlewski, B Kuester, Helmer M Citterich, WN Hunter, R Aasland, TJ Gibson
    posted to embl proj_disocons by chad_davis on 2006-12-22 18:54:22 as **** along with 1 person Evangelia
  • notes Mapping OMIM mutations to SwissProt
    Bioinformatics (2006)
    by Andrew CR Martin
    posted to database data_integration proj_disocons by chad_davis on 2006-12-20 13:18:47 as read
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