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chad_davis' web_service [42 articles]

Artikler nylig sendt til chad_davis' bibliotek klassifisert med nøkkelordet web_service. You can also see everyone's web_service.
  • Integrating biological data - the Distributed Annotation System
    BMC Bioinformatics, Vol. 9, No. Suppl 8. (2008)
    by Andrew Jenkinson, Mario Albrecht, Ewan Birney, Hagen Blankenburg, Thomas Down, Robert Finn, Henning Hermjakob, Tim Hubbard, Rafael Jimenez, Philip Jones, Andreas Kahari, Eugene Kulesha, Jose Macias, Gabrielle Reeves, Andreas Prlic
    posted to web_service toolkit distributed data_integration annotation by chad_davis on 2008-08-09 16:40:02 as *** along with 3 people djkt jyuh aconesa
  • ProCope - Protein Complex Prediction and Evaluation
    Bioinformatics (17 July 2008), btn376.
    by Jan Krumsiek, Caroline C Friedel, Ralf Zimmer
    posted to web_service toolkit structure proj_assembly data_integration complexes algorithm by chad_davis on 2008-08-03 22:03:17 as read along with 2 people jyuh zwang
  • MSDmotif: exploring protein sites and motifs
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Adel Golovin, Kim Henrick
    posted to web_service structure embl drug data_integration database complexes binding algorithm by chad_davis on 2008-07-17 16:18:19 as read along with 2 people massivemayhem reyez
  • The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications
    BMC Bioinformatics, Vol. 8 (19 November 2007), 456.
    by Christopher J Bare, Paul T Shannon, Amy K Schmid, Nitin S Baliga
    posted to web_service text_mining download data_integration by chad_davis on 2008-07-16 17:31:02 as *** along with 7 people and 1 group selatham jyuh jfr dullhunk neils ryanraaum mircea NCCT Lab Reading Group
  • iTools: a framework for classification, categorization and integration of computational biology resources.
    PLoS ONE, Vol. 3, No. 5. (2008)
    by ID Dinov, D Rubin, W Lorensen, J Dugan, J Ma, S Murphy, B Kirschner, W Bug, M Sherman, A Floratos, D Kennedy, HV Jagadish, J Schmidt, B Athey, A Califano, M Musen, R Altman, R Kikinis, I Kohane, S Delp, DS Parker, AW Toga
    posted to web_service toolkit download data_integration by chad_davis on 2008-07-15 12:55:47 as *** along with 3 people srp33 jyuh dullhunk
  • notes Inference of macromolecular assemblies from crystalline state.
    J Mol Biol, Vol. 372, No. 3. (21 September 2007), pp. 774-797.
    by E Krissinel, K Henrick
    posted to web_service validation structure proj_assembly embl database complexes binding annotation algorithm by chad_davis on 2008-07-13 16:28:44 as **** along with 1 person bicko
  • PSIbase: a database of Protein Structural Interactome map (PSIMAP)
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2541-2543.
    by Sungsam Gong, Giseok Yoon, Insoo Jang, Dan Bolser, Panos Dafas, Michael Schroeder, Hansol Choi, Yoobok Cho, Kyungsook Han, Sunghoon Lee, Hwanho Choi, Michael Lappe, Liisa Holm, Sangsoo Kim, Donghoon Oh, Jonghwa Bhak
    posted to web_service structure proj_assembly database binding algorithm by chad_davis on 2008-07-01 14:43:04 as read along with 1 person medic0747
  • Intrinsic disorder prediction from the analysis of multiple protein fold recognition models.
    Bioinformatics (Oxford, England) (25 June 2008)
    by Liam JJ Mcguffin
    posted to web_service structure proj_disocons feature_selection ensemble disorder data_integration classification algorithm by chad_davis on 2008-06-29 10:59:50 as read
  • Calling on a million minds for community annotation in WikiProteins
    Genome Biology, Vol. 9, No. 5. (2008)
    by Barend Mons, Michael Ashburner, Christine Chichester, Erik van Mulligen, Marc Weeber, Johan den Dunnen, Gert J van Ommen, Mark Musen, Matthew Cockerill, Henning Hermjakob, Albert Mons, Abel Packer, Roberto Pacheco, Suzanna Lewis, Alfred Berkeley, William Melton, Nickolas Barris, Jimmy Wales, Gerard Meijssen, Erik Moeller, Peter Roes, Katy Borner, Amos Bairoch
    posted to web_service data_integration annotation by chad_davis on 2008-06-22 20:16:44 as *** along with 14 people and 1 group jyuh carlk ChrisEvelo sjc fpattyn Katje jamselem yas renatomilani dullhunk tharris thomaskelder AlexanderPico neils microbiology_nijmegen
  • MedEvi: Retrieving textual evidence of relations between biomedical concepts from Medline.
    Bioinformatics (Oxford, England) (9 April 2008)
    by Jung, Piotr Pezik, Dietrich R Schuhmann
    posted to web_service text_mining embl algorithm by chad_davis on 2008-06-15 13:11:16 as ** along with 3 people jyuh dullhunk Gaetan
  • PISCES: recent improvements to a PDB sequence culling server.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by G Wang, RL Dunbrack
    posted to web_service structure proj_assembly non-redundant data_integration database alignment by chad_davis on 2008-04-28 15:45:08 as **** along with 4 people kaarsinogen bicko blackbart chgjb
  • POODLE-S: Web application for predicting protein disorder by using physicochemical features and reduced amino acid set of a position specific scoring matrix.
    Bioinformatics (28 June 2007)
    by Kana Shimizu, Shuichi Hirose, Tamotsu Noguchi
    posted to web_service proj_disocons feature_selection disorder classification algorithm by chad_davis on 2008-04-28 15:27:18 as *
  • The Eukaryotic Promoter Database (EPD)
    Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 302-303.
    by Rouaida C Perier, Viviane Praz, Thomas Junier, Claude Bonnard, Philipp Bucher
    posted to database gene_regulation proj_credo web_service by chad_davis on 2008-03-10 10:18:59 as read
  • notes Jane: Suggesting Journals, Finding Experts.
    Bioinformatics (28 January 2008)
    by Martijn JJ Schuemie, Jan AA Kors
    posted to text_mining web_service by chad_davis on 2008-02-20 09:53:28 as **** along with 7 people merj jyuh dullhunk farhat idonaldson renatomilani Barend
  • A note on difficult structure alignment problems
    Bioinformatics, Vol. 24, No. 3. (1 February 2008), pp. 426-427.
    by Manfred J Sippl, Markus Wiederstein
    posted to alignment evolution review structure web_service by chad_davis on 2008-01-31 16:11:26 as read along with 2 people janasont mclarenv
  • The MPI Bioinformatics Toolkit for protein sequence analysis.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by A Biegert, C Mayer, M Remmert, J Söding, AN Lupas
    posted to algorithm alignment modelling mpi web_service by chad_davis on 2008-01-24 10:07:12 as *** along with 2 people moborg grottenolm
  • SignS: a parallelized, open-source, freely available, web-based tool for gene selection and molecular signatures for survival and censored data
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Ramon D Uriarte
    posted to classification feature_selection microarray web_service proj_stabperf by chad_davis on 2008-01-22 10:12:49 as read along with 4 people jfr jyuh aalibes frohike
  • Melina II: a web tool for comparisons among several predictive algorithms to find potential motifs from promoter regions.
    Nucleic Acids Res, Vol. 35, No. Web Server issue. (1 July 2007)
    by T Okumura, H Makiguchi, Y Makita, R Yamashita, K Nakai
    posted to ensemble gene_regulation web_service proj_credo by chad_davis on 2007-11-16 13:36:52 as ***** along with 1 person jyuh
  • notes A Web interface generator for molecular biology programs in Unix.
    Bioinformatics, Vol. 17, No. 1. (January 2001), pp. 73-82.
    by C Letondal
    posted to classic data_integration web_service by chad_davis on 2007-11-16 11:56:39 as ****
  • Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator.
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by AG Castro, S Thoraval, LJ Garcia, MA Ragan
    posted to data_integration web_service by chad_davis on 2007-11-16 11:19:14 as ** along with 3 people jyuh moborg fisherp
  • wEMBOSS: a web interface for EMBOSS.
    Bioinformatics, Vol. 21, No. 4. (15 February 2005), pp. 540-541.
    by M Sarachu, M Colet
    posted to data_integration review web_service by chad_davis on 2007-11-16 10:57:56 as read along with 2 people jyuh dullhunk
  • Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations.
    J Mol Biol, Vol. 320, No. 2. (5 July 2002), pp. 369-387.
    by R Guerois, JE Nielsen, L Serrano
    posted to algorithm binding classic complexes embl structure web_service by chad_davis on 2007-09-28 13:07:21 as **** along with 4 people apaydin aalibes hmk carlescorbi
  • A novel ensemble learning method for de novo computational identification of DNA binding sites
    BMC Bioinformatics, Vol. 8 (12 July 2007), 249.
    by Arijit Chakravarty, Jonathan M Carlson, Radhika S Khetani, Robert H Gross
    posted to algorithm download ensemble feature_selection gene_regulation web_service proj_credo by chad_davis on 2007-08-08 12:26:30 as read along with 2 people and 1 group GustavoLacerda nklee Bioinformatics
  • Protein solubility: sequence based prediction and experimental verification.
    Bioinformatics (6 December 2006)
    by Pawel Smialowski, Antonio, Aleksandra Mikolajka, Tobias Girschick, Tad AA Holak, Dmitrij Frishman
    posted to algorithm classification web_service proj_disocons by chad_davis on 2007-06-07 16:20:04 as **** along with 3 people girschick jyuh bobychan
  • Multiple sequence alignment with the Clustal series of programs.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3497-3500.
    by R Chenna, H Sugawara, T Koike, R Lopez, TJ Gibson, DG Higgins, JD Thompson
    posted to algorithm classic clustering download embl evolution web_service by chad_davis on 2007-04-18 09:17:52 as *** along with 4 people and 1 group miguel beatrizfernandez raylim xingxu Microbial-Ecology
  • Iterated profile searches with PSI-BLAST--a tool for discovery in protein databases.
    Trends Biochem Sci, Vol. 23, No. 11. (November 1998), pp. 444-447.
    by SF Altschul, EV Koonin
    posted to algorithm alignment classic download evolution statistics web_service by chad_davis on 2007-04-16 16:04:17 as * along with 1 person newton1234
  • Tools for comparative protein structure modeling and analysis.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3375-3380.
    by N Eswar, B John, N Mirkovic, A Fiser, VA Ilyin, U Pieper, AC Stuart, Marti MA Renom, MS Madhusudhan, B Yerkovich, A Sali
    posted to database download modelling structure web_service by chad_davis on 2007-04-10 11:28:50 as read along with 2 people and 2 groups vavi marcius BioinfoCIPF SGU-CIPF
  • notes SMART 5: domains in the context of genomes and networks.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by I Letunic, RR Copley, B Pils, S Pinkert, J Schultz, P Bork
    posted to classic classification disorder embl web_service proj_disocons by chad_davis on 2007-04-02 19:40:37 as *** along with 1 person siebertm
  • notes PHD -- an automatic mail server for protein secondary structure prediction.
    Comput Appl Biosci, Vol. 10, No. 1. (February 1994), pp. 53-60.
    by B Rost, C Sander, R Schneider
    posted to classic classification structure web_service proj_disocons by chad_davis on 2007-01-09 14:19:05 as * along with 2 people j3xucite dgront
  • SCRATCH: a protein structure and structural feature prediction server.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by J Cheng, AZ Randall, MJ Sweredoski, P Baldi
    posted to classification structure web_service by chad_davis on 2007-01-02 13:07:37 as *
  • iHOPerator: User-scripting a personalized bioinformatics Web, starting with the iHOP website
    BMC Bioinformatics, Vol. 7 (15 December 2006), 534.
    by Benjamin M Good, Edward A Kawas, Byron Y Kuo, Mark D Wilkinson
    posted to data_integration web_service by chad_davis on 2006-12-22 13:56:33 as *** along with 7 people jyuh textoris jfr dullhunk egonw equipediaz cerami
  • The FoldX web server: an online force field.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by J Schymkowitz, J Borg, F Stricher, R Nys, F Rousseau, L Serrano
    posted to algorithm disease embl structure web_service by chad_davis on 2006-11-29 13:35:33 as *** along with 2 people aalibes neils
  • Babel's tower revisited: a universal resource for cross-referencing across annotation databases.
    Bioinformatics (26 October 2006)
    by Sorin Draghici, Sivakumar Sellamuthu, Purvesh Khatri
    posted to annotation database data_integration web_service proj_disocons by chad_davis on 2006-11-18 21:02:23 as **** along with 6 people jyuh aalibes dullhunk fisherp plofje kynn
  • Human non-synonymous SNPs: server and survey.
    Nucleic Acids Res, Vol. 30, No. 17. (1 September 2002), pp. 3894-3900.
    by V Ramensky, P Bork, S Sunyaev
    posted to classification disease embl web_service proj_disocons by chad_davis on 2006-11-03 13:41:41 as ***** along with 3 people and 1 group chrn happy_manatee cat_worth structural_bioinformatics
  • PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs
    BMC Bioinformatics, Vol. 7 (27 July 2006), 365.
    by Sylvain Pitre, Frank Dehne, Albert Chan, Jim Cheetham, Alex Duong, Andrew Emili, Marinella Gebbia, Jack Greenblatt, Mathew Jessulat, Nevan Krogan, Xuemei Luo, Ashkan Golshani
    posted to binding download yeast web_service by chad_davis on 2006-08-08 11:12:28 as *** along with 1 person gurkanbebek
  • NORSp: Predictions of long regions without regular secondary structure.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3833-3835.
    by J Liu, B Rost
    posted to disorder web_service proj_disocons by chad_davis on 2006-07-22 17:25:19 as ****
  • notes The DISOPRED server for the prediction of protein disorder.
    Bioinformatics, Vol. 20, No. 13. (1 September 2004), pp. 2138-2139.
    by JJ Ward, LJ Mcguffin, K Bryson, BF Buxton, DT Jones
    posted to disorder download web_service proj_disocons by chad_davis on 2006-07-21 17:01:21 as read
  • FoldIndex: a simple tool to predict whether a given protein sequence is intrinsically unfolded.
    Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3435-3438.
    by J Prilusky, CE Felder, Zeev, EH Rydberg, O Man, JS Beckmann, I Silman, JL Sussman
    posted to disorder web_service proj_disocons by chad_davis on 2006-07-21 15:18:48 as read along with 2 people and 1 group pdelosri nm EPFL_SB_ITP_LBS
  • IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content.
    Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3433-3434.
    by Z Dosztanyi, V Csizmok, P Tompa, I Simon
    posted to disorder download web_service proj_disocons by chad_davis on 2006-07-21 13:09:05 as read along with 1 person kluck
  • The DIMA web resourceexploring the protein domain network
    Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 997-998.
    by Philipp Pagel, Matthias Oesterheld, Dmitrij Frishman
    posted to binding database networks structure web_service by chad_davis on 2006-06-23 11:34:52 as **** along with 3 people and 2 groups kintoki marcius bootsy BioinfoCIPF SGU-CIPF
  • ProFace: a server for the analysis of the physicochemical features of protein-protein interfaces
    BMC Structural Biology, Vol. 6 (07 June 2006), 11.
    by Rudra P Saha, Ranjit P Bahadur, Arumay Pal, Saptarshi Mandal, Pinak Chakrabarti
    posted to annotation binding web_service by chad_davis on 2006-06-18 15:30:00 as ** along with 1 person bicko
  • The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling
    Bioinformatics, Vol. 22, No. 2. (15 January 2006), pp. 195-201.
    by Konstantin Arnold, Lorenza Bordoli, Jurgen Kopp, Torsten Schwede
    posted to modelling structure web_service by chad_davis on 2006-04-16 17:06:01 as ** along with 2 people and 2 groups marcius ffranca BioinfoCIPF SGU-CIPF
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