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cisevols flies [65 articles]

Artikler nylig sendt til cisevols bibliotek klassifisert med nøkkelordet flies. You can also see everyone's flies.
  • Elevated levels of expression associated with regions of the Drosophila genome that lack crossing over.
    Biology letters (9 September 2008)
    by Penelope R R Haddrill, Fergal M M Waldron, Brian Charlesworth
    posted to recombination flies expression by cisevol on 2008-09-17 10:35:58 as ** along with 1 group cis-regulatory-evolution
  • Dominance and the evolutionary accumulation of cis- and trans-effects on gene expression.
    Proceedings of the National Academy of Sciences of the United States of America (12 September 2008)
    by Bernardo Lemos, Luciana O O Araripe, Pierre Fontanillas, Daniel L L Hartl
    posted to microarray flies expression cis_vs_trans by cisevol on 2008-09-17 10:32:31 as ** along with 4 people and 1 group caseybrown stevanspringer sebastien_vigneau bpcusack cis-regulatory-evolution
  • Genomic analysis of the relationship between gene expression variation and DNA polymorphism in Drosophila simulans
    Genome Biology, Vol. 9, No. 8. (2008)
    by Mara Lawniczak, Alisha Holloway, David Begun, Corbin Jones
    posted to cis-regulatory flies microarray variation by cisevol on 2008-08-17 23:46:39 as ** along with 3 people and 1 group APRegier caseybrown djkt cis-regulatory-evolution
  • Gene expression variation in African and European populations of Drosophila melanogaster
    Genome Biology, Vol. 9 (21 January 2008), R12.
    by Stephan Hutter, Sarah S Saminadin-Peter, Wolfgang Stephan, John Parsch
    posted to expression flies variation by cisevol on 2008-07-23 13:26:05 as ** along with 2 people and 1 group caseybrown sb_journal_club cis-regulatory-evolution
  • Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster
    Genome Res. (26 June 2008), gr.077131.108.
    by Alisha Holloway, David Begun, Adam Siepel, Katherine Pollard
    posted to flies noncoding by cisevol on 2008-07-10 13:36:09 as ** along with 3 people and 2 groups alhufton maximilianh bpcusack cis-regulatory-evolution BergmanLab
  • Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106.
    by Emily E Hare, Brant K Peterson, Venky N Iyer, Rudolf Meier, Michael B Eisen
    posted to cis-regulatory flies by cisevol on 2008-06-30 21:50:06 as ** along with 7 people and 2 groups maximilianh Stew emptyhb djkt stajich pradiptaray caseybrown Berkeley Mycology cis-regulatory-evolution
  • Evolutionary changes in gene regulation from a comparative analysis of multiple Drosophila species.
    Genome informatics. International Conference on Genome Informatics, Vol. 18 (2007), pp. 12-21.
    by L Hu, D Segrè, TF Smith
    posted to cis-regulatory flies rearrangement by cisevol on 2008-06-12 21:57:48 as ** along with 1 person and 1 group pradiptaray cis-regulatory-evolution
  • CSMET: Comparative Genomic Motif Detection via Multi-Resolution Phylogenetic Shadowing
    PLoS Comput Biol, Vol. 4, No. 6. (6 June 2008), e1000090.
    by Pradipta Ray, Suyash Shringarpure, Mladen Kolar, Eric P Xing
    posted to cis-regulatory flies model by cisevol on 2008-06-07 21:39:11 as ** along with 4 people and 1 group xili03 djkt Stew Ema cis-regulatory-evolution
  • Evolutionary origin of regulatory regions of retrogenes in Drosophila
    BMC Genomics, Vol. 9 (22 May 2008), 241.
    by Yongsheng Bai, Claudio Casola, Esther Betran
    posted to cis-regulatory duplication flies transposon by cisevol on 2008-05-25 09:18:46 as ** along with 1 group cis-regulatory-evolution
  • Microevolutionary divergence pattern of the segmentation gene hunchback in Drosophila.
    Mol Biol Evol, Vol. 15, No. 11. (November 1998), pp. 1403-1411.
    by D Tautz, L Nigro
    posted to cis-regulatory flies variation by cisevol on 2008-05-23 19:03:28 as ** along with 2 people and 1 group balicea emptyhb cis-regulatory-evolution
  • A comparison of homologous developmental genes from Drosophila and Tribolium reveals major differences in length and trinucleotide repeat content.
    Journal of molecular evolution, Vol. 49, No. 5. (November 1999), pp. 558-566.
    by KJ Schmid, D Tautz
    posted to beetles flies insects transcription_factor by cisevol on 2008-05-22 14:22:20 as ** along with 1 group cis-regulatory-evolution
  • A test for adaptive change in DNA sequences controlling transcription.
    Proceedings. Biological sciences / The Royal Society, Vol. 261, No. 1361. (22 August 1995), pp. 203-207.
    by DL Jenkins, CA Ortori, JF Brookfield
    posted to cis-regulatory flies variation by cisevol on 2008-05-22 14:18:25 as ** along with 1 group cis-regulatory-evolution
  • The Evolution of Gene Regulation Underlies a Morphological Difference between Two Drosophila Sister Species.
    Cell, Vol. 132, No. 5. (7 March 2008), pp. 783-793.
    by S Jeong, M Rebeiz, P Andolfatto, T Werner, J True, SB Carroll
    posted to cis-regulatory flies by cisevol on 2008-03-11 21:52:20 as ** along with 1 person and 1 group Stew cis-regulatory-evolution
  • Computational discovery of cis-regulatory modules in Drosophila, without prior knowledge of motifs
    Genome Biology, Vol. 9, No. 1. (2008)
    by Andra Ivan, Marc Halfon, Saurabh Sinha
    posted to cis-regulatory flies model by cisevol on 2008-01-30 14:21:23 as ** along with 2 people and 1 group maximilianh csdhwang cis-regulatory-evolution
  • Coordinated evolution of co-expressed gene clusters in the Drosophila transcriptome
    BMC Evolutionary Biology, Vol. 8 (07 January 2008), 2.
    by Jason G Mezey, Sergey V Nuzhdin, Fangfei Ye, Corbin D Jones
    posted to cis-regulatory flies microarray by cisevol on 2008-01-09 21:40:07 as ** along with 1 group cis-regulatory-evolution
  • Drosophila Genomes by the Baker's Dozen.
    Genetics, Vol. 177, No. 3. (November 2007), pp. 1263-1268.
    by M Ashburner
    posted to flies by cisevol on 2007-12-12 17:36:13 as ** along with 2 people and 2 groups balicea dullhunk BergmanLab Drosophila-Genetics-Genomics-2008
  • A transposable element inserted just 5' to a Drosophila glue protein gene alters gene expression and chromatin structure.
    Cell, Vol. 34, No. 1. (August 1983), pp. 75-84.
    by W McGinnis, AW Shermoen, SK Beckendorf
    posted to cis-regulatory flies transposon by cisevol on 2007-12-01 16:48:38 as ** along with 2 groups cis-regulatory-evolution BergmanLab
  • Remarkable site specificity of local transposition into the Hsp70 promoter of Drosophila melanogaster.
    Genetics, Vol. 173, No. 2. (June 2006), pp. 809-820.
    by VY Shilova, DG Garbuz, EN Myasyankina, B Chen, MB Evgen'ev, ME Feder, OG Zatsepina
    posted to cis-regulatory flies transposon by cisevol on 2007-10-25 11:56:50 as ** along with 1 person and 2 groups pradiptaray cis-regulatory-evolution BergmanLab
  • Effect of Divergence Time and Recombination Rate on Molecular Evolution of Drosophila INE-1 Transposable Elements and Other Candidates for Neutrally Evolving Sites.
    J Mol Evol (25 September 2007)
    by Jun Wang, Peter D Keightley, Daniel L Halligan
    posted to flies noncoding transposon by cisevol on 2007-10-24 10:10:40 as ** along with 1 group cis-regulatory-evolution
  • The regulatory content of intergenic DNA shapes genome architecture.
    Genome Biol, Vol. 5, No. 4. (2004)
    by CE Nelson, BM Hersh, SB Carroll
    posted to cis-regulatory flies noncoding worms by cisevol on 2007-10-24 10:08:04 as ** along with 5 people and 4 groups tharris dpollard madhadron elzodw blobbybirdman C. elegans / WormBase EisenLab cis-regulatory-evolution BergmanLab
  • Evolution of heterochromatic genes of Drosophila.
    Proc Natl Acad Sci U S A, Vol. 102, No. 31. (2 August 2005), pp. 10958-10963.
    by JC Yasuhara, CH DeCrease, BT Wakimoto
    posted to cis-regulatory flies by cisevol on 2007-10-21 19:15:08 as ** along with 2 people and 3 groups operon dchughes G4ID Genetics-of-Gambling cis-regulatory-evolution
  • Purifying Selection Maintains Highly Conserved Noncoding Sequences in Drosophila.
    Mol Biol Evol (23 July 2007)
    by Sònia Casillas, Antonio Barbadilla, Casey M M Bergman
    posted to flies noncoding variation by cisevol on 2007-10-21 19:12:36 as ** along with 7 people and 2 groups operon dpollard emilyhare Garamonfok Stew emptyhb brant EisenLab cis-regulatory-evolution
  • Naturally occurring transposable elements disrupt hsp70 promoter function in Drosophila melanogaster.
    Mol Biol Evol, Vol. 22, No. 3. (March 2005), pp. 776-783.
    by DN Lerman, ME Feder
    posted to cis-regulatory flies transposon by cisevol on 2007-10-21 18:51:20 as ** along with 1 group cis-regulatory-evolution
  • Functional conservation of Rel binding sites in drosophilid genomes
    Genome Res., Vol. 17, No. 9. (1 September 2007), pp. 1327-1335.
    by Richard R Copley, Maxim Totrov, Jane Linnell, Simon Field, Jiannis Ragoussis, Irina A Udalova
    posted to cis-regulatory flies by cisevol on 2007-10-20 11:39:05 as ** along with 3 people and 2 groups dpollard Stew yevishere EisenLab cis-regulatory-evolution
  • The information coded in the yeast response elements accounts for most of the topological properties of its transcriptional regulation network.
    PLoS ONE, Vol. 2, No. 6. (2007)
    by D Balcan, A Kabakçioğlu, M Mungan, A Erzan
    posted to cis-regulatory flies by cisevol on 2007-10-19 15:35:36 as ** along with 1 person and 1 group thecolourblue BergmanLab
  • Insertion/Deletion and Nucleotide Polymorphism Data Reveal Constraints in Drosophila melanogaster Introns and Intergenic Regions
    Genetics, Vol. 169, No. 3. (1 March 2005), pp. 1521-1527.
    by Lino Ometto, Wolfgang Stephan, David De Lorenzo
    posted to flies noncoding by cisevol on 2007-10-18 17:24:33 as ** along with 2 people and 1 group penka smbe2008 Nie
  • The nucleotide changes governing cuticular hydrocarbon variation and their evolution in Drosophila melanogaster
    PNAS, Vol. 98, No. 7. (27 March 2001), pp. 3920-3925.
    by Aya Takahashi, Shun-Chern Tsaur, Jerry A Coyne, Chung-I Wu
    posted to cis-regulatory flies variation by cisevol on 2007-10-17 21:52:36 as ** along with 2 people and 2 groups RMGraze adepace EisenLab cis-regulatory-evolution
  • Evolutionary changes in cis and trans gene regulation
    Nature, Vol. 430, No. 6995. (1 July 2004), pp. 85-88.
    by Patricia J Wittkopp, Belinda K Haerum, Andrew G Clark
    posted to cis-regulatory flies by cisevol on 2007-10-17 21:51:55 as ** along with 8 people and 2 groups lyongu dpollard balicea tabu adepace emmahe emarker mimulus_99 EisenLab cis-regulatory-evolution
  • Reduced efficacy of selection in regions of the Drosophila genome that lack crossing over
    Genome Biology, Vol. 8 (06 February 2007), R18.
    by Penelope R Haddrill, Daniel L Halligan, Dimitris Tomaras, Brian Charlesworth
    posted to flies noncoding by cisevol on 2007-10-17 21:44:18 as ** along with 3 people and 2 groups dpollard djkt smbe2008 EisenLab cis-regulatory-evolution
  • Cis-Regulatory Elements in the Accord Retrotransposon Result in Tissue-Specific Expression of the Drosophila melanogaster Insecticide Resistance Gene Cyp6g1
    Genetics, Vol. 175, No. 3. (1 March 2007), pp. 1071-1077.
    by Henry Chung, Michael R Bogwitz, Caroline Mccart, Alex Andrianopoulos, Richard H Ffrench-Constant, Philip Batterham, Phillip J Daborn
    posted to cis-regulatory flies transposon by cisevol on 2007-10-17 21:39:49 as ** along with 1 person and 2 groups dpollard EisenLab cis-regulatory-evolution
  • Discovering transcriptional regulatory regions in Drosophila by a nonalignment method for phylogenetic footprinting.
    Proc Natl Acad Sci U S A (29 March 2007)
    by Alona Sosinsky, Barry Honig, Richard S S Mann, Andrea Califano
    posted to cis-regulatory flies by cisevol on 2007-10-17 21:36:17 as ** along with 4 people and 2 groups dpollard Stew maximilianh isimpson EisenLab cis-regulatory-evolution
  • Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.
    Genome Res, Vol. 15, No. 8. (August 2005), pp. 1034-1050.
    by A Siepel, G Bejerano, JS Pedersen, AS Hinrichs, M Hou, K Rosenbloom, H Clawson, J Spieth, LW Hillier, S Richards, GM Weinstock, RK Wilson, RA Gibbs, WJ Kent, W Miller, D Haussler
    posted to flies mammals noncoding worms by cisevol on 2007-10-17 20:53:16 as ** along with 16 people and 4 groups tharris bpb aprasad balajis eckart_bindewald indigoviolet brant pradiptaray adepace djkt olympos sujaikumar Stew dmc elfar AlexanderPico C. elegans / WormBase EisenLab cis-regulatory-evolution ConklinLab
  • Morphological evolution through multiple cis-regulatory mutations at a single gene
    Nature (15 July 2007)
    by Alistair P Mcgregor, Virginie Orgogozo, Isabelle Delon, Jennifer Zanet, Dayalan G Srinivasan, François Payre, David L Stern
    posted to cis-regulatory flies by cisevol on 2007-10-17 08:46:49 as ** along with 7 people and 2 groups carlfulp dpollard djkt zwang Stew xingxu emptyhb EisenLab cis-regulatory-evolution
  • The function and regulation of Ultrabithorax in the legs of Drosophila melanogaster.
    Dev Biol (12 June 2007)
    by Gregory K K Davis, Dayalan G G Srinivasan, Patricia J J Wittkopp, David L L Stern
    posted to cis-regulatory flies by cisevol on 2007-10-17 08:46:42 as ** along with 1 person and 2 groups Stew EisenLab cis-regulatory-evolution
  • Evolution of cis-regulatory sequence and function in Diptera
    Heredity, Vol. aop, No. current.
    by PJ Wittkopp,
    posted to cis-regulatory flies review by cisevol on 2007-10-16 23:10:03 as ** along with 5 people and 2 groups indigoviolet dpollard adepace emmahe emptyhb EisenLab cis-regulatory-evolution
  • Heat-Shock Promoters: Targets for Evolution by P Transposable Elements in Drosophila.
    PLoS Genet, Vol. 2, No. 10. (6 October 2006)
    by Jean-Claude C Walser, Bing Chen, Martin E E Feder
    posted to cis-regulatory flies transposon by cisevol on 2007-10-16 23:09:14 as ** along with 1 person and 3 groups dpollard EisenLab cis-regulatory-evolution BergmanLab
  • A probabilistic method to detect regulatory modules.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by S Sinha, E van Nimwegen, ED Siggia
    posted to cis-regulatory flies model by cisevol on 2007-10-16 23:06:26 as ** along with 3 people and 2 groups indigoviolet dquest lusk EisenLab cis-regulatory-evolution
  • Sequence turnover and tandem repeats in cis-regulatory modules in drosophila.
    Mol Biol Evol, Vol. 22, No. 4. (April 2005), pp. 874-885.
    by S Sinha, ED Siggia
    posted to cis-regulatory flies by cisevol on 2007-10-16 23:05:12 as ** along with 2 people and 1 group operon emptyhb cis-regulatory-evolution
  • Coevolution in bicoid-dependent promoters and the inception of regulatory incompatibilities among species of higher Diptera.
    Evol Dev, Vol. 4, No. 4. (g 2002), pp. 265-277.
    by PJ Shaw, NS Wratten, AP McGregor, GA Dover
    posted to cis-regulatory flies by cisevol on 2007-10-16 23:01:54 as ** along with 1 person and 2 groups adepace EisenLab cis-regulatory-evolution
  • Molecular evolution of the duplicated Amy locus in the Drosophila melanogaster species subgroup: concerted evolution only in the coding region and an excess of nonsynonymous substitutions in speciation.
    Genetics, Vol. 141, No. 1. (September 1995), pp. 223-236.
    by H Shibata, T Yamazaki
    posted to cis-regulatory flies by cisevol on 2007-10-16 22:59:15 as ** along with 1 group cis-regulatory-evolution
  • Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution.
    Genome Res, Vol. 15, No. 1. (January 2005), pp. 1-18.
    by S Richards, Y Liu, BR Bettencourt, P Hradecky, S Letovsky, R Nielsen, K Thornton, MJ Hubisz, R Chen, RP Meisel, O Couronne, S Hua, MA Smith, P Zhang, J Liu, HJ Bussemaker, MF van Batenburg, SL Howells, SE Scherer, E Sodergren, BB Matthews, MA Crosby, AJ Schroeder, D Ortiz-Barrientos, CM Rives, ML Metzker, DM Muzny, G Scott, D Steffen, DA Wheeler, KC Worley, P Havlak, KJ Durbin, A Egan, R Gill, J Hume, MB Morgan, G Miner, C Hamilton, Y Huang, L Waldron, D Verduzco, KP Clerc-Blankenburg, I Dubchak, MA Noor, W Anderson, KP White, AG Clark, SW Schaeffer, W Gelbart, GM Weinstock, RA Gibbs
    posted to cis-regulatory flies by cisevol on 2007-10-16 22:56:20 as ** along with 9 people and 3 groups briann tsackton jshapiro operon indigoviolet penka adepace emptyhb skumagai EisenLab Nie cis-regulatory-evolution
  • Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments
    BMC Bioinformatics, Vol. 7 (14 August 2006), 376.
    by Daniel A Pollard, Alan M Moses, Venky N Iyer, Michael B Eisen
    posted to cis-regulatory flies by cisevol on 2007-10-16 22:55:59 as ** along with 6 people and 2 groups aprasad dpollard lusk Garamonfok lilou emptyhb EisenLab cis-regulatory-evolution
  • The Adh gene promoters of Drosophila melanogaster and Drosophila orena are functionally conserved and share features of sequence structure and nuclease-protected sites.
    Mol Cell Biol, Vol. 10, No. 2. (February 1990), pp. 539-548.
    by K Moses, U Heberlein, M Ashburner
    posted to cis-regulatory flies by cisevol on 2007-10-16 22:55:24 as ** along with 1 group cis-regulatory-evolution
  • Evolution of developmental genes: molecular microevolution of enhancer sequences at the Ubx locus in Drosophila and its impact on developmental phenotypes.
    Mol Biol Evol, Vol. 21, No. 2. (February 2004), pp. 348-363.
    by J Phinchongsakuldit, S MacArthur, JF Brookfield
    posted to cis-regulatory flies by cisevol on 2007-10-16 22:54:57 as ** along with 2 people and 2 groups adepace emptyhb EisenLab cis-regulatory-evolution
  • Large-scale turnover of functional transcription factor binding sites in Drosophila.
    PLoS Comput Biol, Vol. 2, No. 10. (October 2006)
    by AM Moses, DA Pollard, DA Nix, VN Iyer, XY Li, MD Biggin, MB Eisen
    posted to cis-regulatory flies model by cisevol on 2007-10-16 22:53:57 as ** along with 6 people and 2 groups caseybrown adepace eukfn lusk maximilianh emptyhb EisenLab cis-regulatory-evolution
  • Rapid restructuring of bicoid-dependent hunchback promoters within and between Dipteran species: implications for molecular coevolution.
    Evol Dev, Vol. 3, No. 6. (c 2001), pp. 397-407.
    by AP McGregor, PJ Shaw, JM Hancock, D Bopp, M Hediger, NS Wratten, GA Dover
    posted to cis-regulatory flies by cisevol on 2007-10-16 22:53:21 as ** along with 1 group cis-regulatory-evolution
  • Identifying signatures of selection at the enhancer of split neurogenic gene complex in Drosophila.
    Mol Biol Evol, Vol. 22, No. 3. (March 2005), pp. 607-619.
    by SJ Macdonald, AD Long
    posted to cis-regulatory flies variation by cisevol on 2007-10-16 22:51:36 as ** along with 1 group cis-regulatory-evolution
  • Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change.
    Development, Vol. 125, No. 5. (March 1998), pp. 949-958.
    by MZ Ludwig, NH Patel, M Kreitman
    posted to cis-regulatory flies by cisevol on 2007-10-16 22:49:51 as ** along with 3 people and 2 groups adepace emptyhb brant EisenLab cis-regulatory-evolution
  • Functional Evolution of a cis-Regulatory Module
    PLoS Biology, Vol. 3, No. 4. (1 April 2005), e93.
    by Michael Z Ludwig, Arnar Palsson, Elena Alekseeva, Casey M Bergman, Janaki Nathan, Martin Kreitman
    posted to cis-regulatory flies by cisevol on 2007-10-16 22:49:23 as ** along with 4 people and 3 groups mimulus_99 blobbybirdman brant emptyhb UH - Computational Biology cis-regulatory-evolution Myxo group
  • Evolutionary dynamics of the enhancer region of even-skipped in Drosophila.
    Mol Biol Evol, Vol. 12, No. 6. (November 1995), pp. 1002-1011.
    by MZ Ludwig, M Kreitman
    posted to cis-regulatory flies variation by cisevol on 2007-10-16 22:49:00 as ** along with 1 person and 1 group emptyhb cis-regulatory-evolution
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