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clearbluesprings library [98 articles]

Nye artikler sendt til clearbluesprings bibliotek.
  • Imprinted Nesp55 influences behavioral reactivity to novel environments.
    Molecular and cellular biology, Vol. 25, No. 8. (April 2005), pp. 3019-3026.
    by A Plagge, AR Isles, E Gordon, T Humby, W Dean, S Gritsch, R Fischer-Colbrie, LS Wilkinson, G Kelsey
    posted to escells by clearbluespring on 2008-07-04 16:17:19 as **
  • Gene duplication and the adaptive evolution of a classic genetic switch
    Nature, Vol. 449, No. 7163. (11 October 2007), pp. 677-681.
    by Chris T Hittinger, Sean B Carroll
    posted to evolution duplication by clearbluespring on 2008-07-04 12:18:48 as ** along with 8 people and 2 groups skumagai mcphee dpollard dchughes djkt biomcgary blobbybirdman kjlipin EisenLab cis-regulatory-evolution
  • The Evolutionary Fate and Consequences of Duplicate Genes
    Science, Vol. 290, No. 5494. (10 November 2000), pp. 1151-1155.
    by Michael Lynch, John S Conery
    posted to evolution duplication by clearbluespring on 2008-07-04 12:01:46 as ** along with 7 people BioNica knaseanka arve nirfriedman echinotrix treangen timflutre
  • DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family.
    Bioinformatics (Oxford, England), Vol. 18, No. 3. (March 2002), pp. 500-501.
    by X Gu, K Vander Velden
    posted to tools statistics duplication by clearbluespring on 2008-07-03 17:45:27 as **
  • Statistical methods for testing functional divergence after gene duplication
    Mol Biol Evol, Vol. 16, No. 12. (1 December 1999), pp. 1664-1674.
    by X Gu
    posted to tools statistics duplication by clearbluespring on 2008-07-03 17:42:37 as **
  • Rapid evolution through gene duplication and subfunctionalization of the testes-specific alpha4 proteasome subunits in Drosophila.
    Genetics, Vol. 168, No. 3. (November 2004), pp. 1421-1432.
    by DG Torgerson, RS Singh
    posted to retrogenes evolution duplication by clearbluespring on 2008-07-03 17:35:41 as ** along with 2 people BioNica zhlei
  • Reciprocally imprinted genes and the response to selection on one sex.
    Genetics (18 June 2008)
    by Manus Patten, David Haig
    posted to sexspecific imprinting by clearbluespring on 2008-06-23 11:55:46 as **
  • Allele-specific demethylation at an imprinted mammalian promoter
    Nucl. Acids Res., Vol. 35, No. 20. (29 November 2007), pp. 7031-7039.
    by Andrew J Wood, Deborah Bourc'his, Timothy H Bestor, Rebecca J Oakey
    posted to retrogenes inpp5f_v3 by clearbluespring on 2008-06-10 18:23:51 as ** along with 2 people epigenetics rschulz
  • Genome-Wide Analysis Reveals a Complex Pattern of Genomic Imprinting in Mice
    PLoS Genet, Vol. 4, No. 6. (6 June 2008), e1000091.
    by Jason B Wolf, James M Cheverud, Charles Roseman, Reinmar Hager
    posted to qtl imprinting by clearbluespring on 2008-06-10 11:00:15 as ** along with 1 person djkt
  • Keeping sister chromatids together: cohesins in meiosis.
    Reproduction, Vol. 130, No. 6. (December 2005), pp. 783-790.
    by E Revenkova, R Jessberger
    posted to review cohesin by clearbluespring on 2008-06-04 12:21:36 as ** along with 1 person sebastien_vigneau
  • Evolution of the CDKN1C-KCNQ1 imprinted domain
    BMC Evolutionary Biology, Vol. 8 (29 May 2008), 163.
    by Eleanor I Ager, Andrew J Pask, Helen M Gehring, Geoff Shaw, Marilyn B Renfree
    posted to igf2 evolution by clearbluespring on 2008-06-01 11:59:22 as **
  • The mouse X chromosome is enriched for multicopy testis genes showing postmeiotic expression.
    Nature genetics (4 May 2008)
    by Jacob L L Mueller, Shantha K K Mahadevaiah, Peter J J Park, Peter E E Warburton, David C C Page, James M A M Turner
    posted to xci xchromosome tandemarrays by clearbluespring on 2008-05-29 12:21:14 as ** along with 1 person sebastien_vigneau
  • The not-so-silent X
    Nat Genet, Vol. 40, No. 6. (June 2008), pp. 689-690.
    by Christine M Disteche
    posted to xci xchromosome msci by clearbluespring on 2008-05-29 12:11:16 as **
  • Alternative splicing: A missing piece in the puzzle of intron gain.
    Proceedings of the National Academy of Sciences of the United States of America (7 May 2008)
    by Rosa Tarrío, Francisco J J Ayala, Francisco Rodríguez-Trelles
    posted to intron aqisition by clearbluespring on 2008-05-21 12:11:51 as ** along with 3 people and 1 group stajich bootsy imtechnology Berkeley Mycology
  • Genomic imprinting at the mammalian Dlk1-Dio3 domain.
    Trends in genetics : TIG (7 May 2008)
    by Simao Teixeira da T Rocha, Carol A A Edwards, Mitsuteru Ito, Tsutomu Ogata, Anne C C Ferguson-Smith
    posted to review dlk-dio3 by clearbluespring on 2008-05-19 10:41:32 as **
  • DNA methylation profiling of pseudogene-parental gene pairs and two gene families.
    Genomics (29 April 2008)
    by Rene Cortese, Manuel Krispin, Gunter Weiss, Kurt Berlin, Florian Eckhardt
    posted to methylation evolution by clearbluespring on 2008-05-06 09:18:50 as **
  • DNA Damage, Homology-Directed Repair, and DNA Methylation.
    PLoS Genet, Vol. 3, No. 7. (6 July 2007)
    by Concetta Cuozzo, Antonio Porcellini, Tiziana Angrisano, Annalisa Morano, Bongyong Lee, Alba Di D Pardo, Samantha Messina, Rodolfo Iuliano, Alfredo Fusco, Maria R R Santillo, Mark T T Muller, Lorenzo Chiariotti, Max E E Gottesman, Enrico V V Avvedimento
    posted to methylation by clearbluespring on 2008-05-01 16:47:28 as **
  • Identification of a Ctcf cofactor, Yy1, for the X chromosome binary switch.
    Molecular cell, Vol. 25, No. 1. (12 January 2007), pp. 43-56.
    by ME Donohoe, LF Zhang, N Xu, Y Shi, JT Lee
    posted to yy1 by clearbluespring on 2008-04-30 15:44:01 as **
  • Control of neurulation by the nucleosome assembly protein-1-like 2.
    Nat Genet, Vol. 25, No. 4. (August 2000), pp. 431-435.
    by UC Rogner, DD Spyropoulos, N Le Novère, JP Changeux, P Avner
    posted to nap by clearbluespring on 2008-04-29 17:34:24 as ** along with 1 person lenov
  • RTAnalyzer: a web application for finding new retrotransposons and detecting L1 retrotransposition signatures.
    Nucleic acids research, Vol. 35, No. Web Server issue. (July 2007)
    by JF Lucier, J Perreault, JF Noël, G Boire, JP Perreault
    posted to targetsiteduplication by clearbluespring on 2008-04-11 16:27:57 as ** along with 1 person rschulz
  • A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease.
    Hum Genet, Vol. 117, No. 5. (September 2005), pp. 411-427.
    by JM Chen, PD Stenson, DN Cooper, C Férec
    posted to human retrogenes targetsiteduplication by clearbluespring on 2008-04-11 16:25:52 as ** along with 2 people aprasad rschulz
  • Chromosomal Gene Movements Reflect the Recent Origin and Biology of Therian Sex Chromosomes
    PLoS Biology, Vol. 6, No. 4. (1 April 2008), e80.
    by Lukasz Potrzebowski, Nicolas Vinckenbosch, Ana C Marques, Frédéric Chalmel, Bernard Jégou, Henrik Kaessmann
    posted to dating msci xchromosome by clearbluespring on 2008-04-02 11:27:51 as ** along with 1 person rschulz
  • DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes
    Genes Dev., Vol. 22, No. 7. (1 April 2008), pp. 908-917.
    by Satomi Kuramochi-Miyagawa, Toshiaki Watanabe, Kengo Gotoh, Yasushi Totoki, Atsushi Toyoda, Masahito Ikawa, Noriko Asada, Kanako Kojima, Yuka Yamaguchi, Takashi W Ijiri, Kenichiro Hata, En Li, Yoichi Matsuda, Tohru Kimura, Masaru Okabe, Yoshiyuki Sakaki, Hiroyuki Sasaki, Toru Nakano
    posted to methylation spermatogenesis transposableelements by clearbluespring on 2008-04-02 11:13:23 as **
  • Transient cyclical methylation of promoter DNA
    Nature, Vol. 452, No. 7183. (6 March 2008), pp. 112-115.
    by Sara Kangaspeska, Brenda Stride, Raphael Metivier, Maria Polycarpou-Schwarz, David Ibberson, Richard P Carmouche, Vladimir Benes, Frank Gannon, George Reid
    posted to cyclical maintenance by clearbluespring on 2008-03-18 10:23:24 as ** along with 4 people vega djkt maximilianh dunnp
  • Cyclical DNA methylation of a transcriptionally active promoter
    Nature, Vol. 452, No. 7183. (6 March 2008), pp. 45-50.
    by Raphael Metivier, Rozenn Gallais, Christophe Tiffoche, Christine Le Peron, Renata Z Jurkowska, Richard P Carmouche, David Ibberson, Peter Barath, Florence Demay, George Reid, Vladimir Benes, Albert Jeltsch, Frank Gannon, Gilles Salbert
    posted to cyclical methylation by clearbluespring on 2008-03-18 10:20:55 as ** along with 3 people vega djkt epigenetics
  • Neuron-specific relaxation of Igf2r imprinting is associated with neuron-specific histone modifications and lack of its antisense transcript Air
    Hum. Mol. Genet., Vol. 14, No. 17. (1 September 2005), pp. 2511-2520.
    by Yoko Yamasaki, Tomohiko Kayashima, Hidenobu Soejima, Akira Kinoshita, Ko-Ichiro Yoshiura, Naomichi Matsumoto, Tohru Ohta, Takeshi Urano, Hideaki Masuzaki, Tadayuki Ishimaru, Tsunehiro Mukai, Norio Niikawa, Tatsuya Kishino
    posted to brainregions cellculture by clearbluespring on 2008-03-07 16:22:12 as **
  • Imprinting in neurons.
    Cytogenet Genome Res, Vol. 113, No. 1-4. (2006), pp. 209-214.
    by T Kishino
    posted to brainregions cellculture igf2r by clearbluespring on 2008-03-07 12:30:34 as **
  • STAT3 is a potential modulator of HIF-1-mediated VEGF expression in human renal carcinoma cells
    FASEB J. (26 May 2005), 04-3099fje.
    by Joo E Jung, Hyun-Gyu Lee, Ik-Hyun Cho, Doo H Chung, Sun-Hee Yoon, Young M Yang, Jung W Lee, Seongwon Choi, Jong-Wan Park, Sang-Kyu Ye, Myung-Hee Chung
    posted to chip wholetissue by clearbluespring on 2008-03-07 12:24:52 as **
  • Contribution of HIF-1α or HIF-2α to erythropoietin expression: in vivo evidence based on chromatin immunoprecipitation
    Annals of Hematology, Vol. 87, No. 1. (21 January 2008), pp. 11-17.
    by Eun-Jin Yeo, Young-Suk Cho, Myung-Suk Kim, Jong-Wan Park
    posted to chip wholetissue by clearbluespring on 2008-03-07 12:22:52 as **
  • Meiotic failure in male mice lacking an X-linked factor
    Genes Dev., Vol. 22, No. 5. (1 March 2008), pp. 682-691.
    by Fang Yang, Katarina Gell, Godfried W van der Heijden, Sigrid Eckardt, Adrian N Leu, David C Page, Ricardo Benavente, Chengtao Her, Christer Hoog, John K Mclaughlin, Peijing J Wang
    posted to msci spermatogenesis by clearbluespring on 2008-03-04 10:28:11 as **
  • Mouse inter-subspecific consomic strains for genetic dissection of quantitative complex traits
    Genome Res., Vol. 18, No. 3. (1 March 2008), pp. 500-508.
    by Toyoyuki Takada, Akihiko Mita, Akiteru Maeno, Takahiro Sakai, Hiroshi Shitara, Yoshiaki Kikkawa, Kazuo Moriwaki, Hiromichi Yonekawa, Toshihiko Shiroishi
    posted to consomic msm strains by clearbluespring on 2008-03-03 10:16:55 as **
  • Role of retrotransposon-derived imprinted gene, Rtl1, in the feto-maternal interface of mouse placenta
    Nature Genetics, Vol. 40, No. 2. (06 January 2008), pp. 243-248.
    by Yoichi Sekita, Hirotaka Wagatsuma, Kenji Nakamura, Ryuichi Ono, Masayo Kagami, Noriko Wakisaka, Toshiaki Hino, Rika Suzuki-Migishima, Takashi Kohda, Atsuo Ogura, Tsutomu Ogata, Minesuke Yokoyama, Tomoko Kaneko-Ishino, Fumitoshi Ishino
    posted to retrogenes rtl1 by clearbluespring on 2008-03-03 10:12:37 as ** along with 2 people rschulz meiklej
  • CTCF binding sites promote transcription initiation and prevent DNA methylation on the maternal allele at the imprinted H19/Igf2 locus.
    Hum Mol Genet, Vol. 15, No. 19. (1 October 2006), pp. 2945-2954.
    by N Engel, JL Thorvaldsen, MS Bartolomei
    posted to chip ctcf h19 by clearbluespring on 2008-02-29 14:41:16 as **
  • Allele-specific methylation of a functional CTCF binding site upstream of MEG3 in the human imprinted domain of 14q32
    Chromosome Research, Vol. 13, No. 8. (December 2005), pp. 809-818.
    by Alberto Rosa, Yuan-Qing Wu, Bernard Kwabi-Addo, Karen Coveler, Reid, Lisa Shaffer
    posted to ctcf human meg3 by clearbluespring on 2008-02-29 14:01:37 as **
  • Critical DNA binding interactions of the insulator protein CTCF: a small number of zinc fingers mediate strong binding, and a single finger-DNA interaction controls binding at imprinted loci.
    J Biol Chem, Vol. 282, No. 46. (16 November 2007), pp. 33336-33345.
    by M Renda, I Baglivo, B Burgess-Beusse, S Esposito, R Fattorusso, G Felsenfeld, PV Pedone
    posted to ctcf by clearbluespring on 2008-02-29 13:53:04 as **
  • CTCF Interacts with and Recruits the Largest Subunit of RNA Polymerase II to CTCF Target Sites Genome-Wide
    Mol. Cell. Biol., Vol. 27, No. 5. (1 March 2007), pp. 1631-1648.
    by Igor Chernukhin, Shaharum Shamsuddin, Sung Y Kang, Rosita Bergstrom, Yoo-Wook Kwon, Wenqiang Yu, Joanne Whitehead, Rituparna Mukhopadhyay, France Docquier, Dawn Farrar, Ian Morrison, Marc Vigneron, Shwu-Yuan Wu, Cheng-Ming Chiang, Dmitri Loukinov, Victor Lobanenkov, Rolf Ohlsson, Elena Klenova
    posted to chip ctcf by clearbluespring on 2008-02-29 13:10:07 as ** along with 2 people and 1 group kengg sebastien_vigneau Plantandetc
  • The Binding Sites for the Chromatin Insulator Protein CTCF Map to DNA Methylation-Free Domains Genome-Wide
    Genome Res., Vol. 14, No. 8. (1 August 2004), pp. 1594-1602.
    by Rituparna Mukhopadhyay, Wenqiang Yu, Joanne Whitehead, Junwang Xu, Magda Lezcano, Svetlana Pack, Chandrasekhar Kanduri, Meena Kanduri, Vasudeva Ginjala, Alexander Vostrov, Wolfgang Quitschke, Igor Chernukhin, Elena Klenova, Victor Lobanenkov, Rolf Ohlsson
    posted to chip ctcf by clearbluespring on 2008-02-27 15:22:19 as ** along with 2 people sebastien_vigneau olympos
  • Abnormal sperm in mice lacking the Taf7l gene.
    Mol Cell Biol, Vol. 27, No. 7. (April 2007), pp. 2582-2589.
    by Y Cheng, MG Buffone, M Kouadio, M Goodheart, DC Page, GL Gerton, I Davidson, PJ Wang
    posted to spermatogenesis by clearbluespring on 2008-02-22 17:04:03 as **
  • Evidence that homologous X-chromosome pairing requires transcription and Ctcf protein.
    Nat Genet (21 October 2007)
    by Na Xu, Mary E E Donohoe, Susana S S Silva, Jeannie T T Lee
    posted to xci by clearbluespring on 2008-02-20 18:29:36 as ** along with 2 people sebastien_vigneau rschulz
  • Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators
    The EMBO Journal, Vol. aop, No. current. (24 January 2008)
    by William Stedman, Hyojeung Kang, Shu Lin, Joseph L Kissil, Marisa S Bartolomei, Paul M Lieberman
    posted to cohesin imprinting by clearbluespring on 2008-02-18 14:23:03 as ** along with 1 person sebastien_vigneau
  • Cohesin mediates transcriptional insulation by CCCTC-binding factor
    Nature (30 January 2008)
    by Kerstin S Wendt, Keisuke Yoshida, Takehiko Itoh, Masashige Bando, Birgit Koch, Erika Schirghuber, Shuichi Tsutsumi, Genta Nagae, Ko Ishihara, Tsuyoshi Mishiro, Kazuhide Yahata, Fumio Imamoto, Hiroyuki Aburatani, Mitsuyoshi Nakao, Naoko Imamoto, Kazuhiro Maeshima, Katsuhiko Shirahige, Jan-Michael Peters
    posted to cohesin by clearbluespring on 2008-02-18 11:35:44 as ** along with 3 people sebastien_vigneau jackjackjjj rschulz
  • DNA methyltransferase 3B (DNMT3B) mutations in ICF syndrome lead to altered epigenetic modifications and aberrant expression of genes regulating development, neurogenesis, and immune function
    Hum. Mol. Genet. (27 November 2007), ddm341.
    by Bilian Jin, Qian Tao, Jinrong Peng, Hui M Soo, Wei Wu, Jianming Ying, Robert C Fields, Amber L Delmas, Xuefeng Liu, Jingxin Qiu, Keith D Robertson
    posted to dnmt3b human by clearbluespring on 2008-02-13 13:10:53 as ** along with 2 people dchughes epigenetics
  • DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA
    Nature, Vol. 448, No. 7154. (2007), pp. 714-717.
    by Steen K Ooi, Chen Qiu, Emily Bernstein, Keqin Li, Da Jia, Zhe Yang, Hediye Erdjument-Bromage, Paul Tempst, Shau-Ping Lin, David C Allis, Xiaodong Cheng, Timothy H Bestor
    posted to dnmt3l histones methylation by clearbluespring on 2008-02-08 18:43:12 as ** along with 3 people sebastien_vigneau epigenetics rschulz
  • Methylation dynamics of repetitive DNA elements in the mouse germ cell lineage.
    Genomics, Vol. 82, No. 2. (August 2003), pp. 230-237.
    by DJ Lees-Murdock, M De Felici, CP Walsh
    posted to methylation repeats transposableelements by clearbluespring on 2008-02-07 15:41:10 as **
  • Sexual dimorphism in parental imprint ontogeny and contribution to embryonic development.
    Mol Cell Endocrinol (29 November 2007)
    by Déborah Bourc'his, Charlotte Proudhon
    posted to dnmt1 dnmt3b methylation by clearbluespring on 2008-02-07 15:25:32 as ** along with 1 person rschulz
  • Transposon silencing and imprint establishment in mammalian germ cells.
    Cold Spring Harb Symp Quant Biol, Vol. 69 (2004), pp. 381-387.
    by TH Bestor, D Bourc'his
    posted to methylation transposableelements by clearbluespring on 2008-02-07 15:13:49 as **
  • Epigenetic Decisions in Mammalian Germ Cells
    Science, Vol. 316, No. 5823. (20 April 2007), pp. 398-399.
    by Christopher B Schaefer, Steen K Ooi, Timothy H Bestor, Deborah Bourc'his
    posted to dnmt3b methylation transposableelements by clearbluespring on 2008-02-07 15:13:23 as ** along with 1 group Bioinformatics
  • Isolation and mapping of human homologues of an imprinted mouse gene U2af1-rs1.
    Genomics, Vol. 30, No. 2. (20 November 1995), pp. 257-263.
    by K Kitagawa, X Wang, I Hatada, T Yamaoka, H Nojima, J Inazawa, T Abe, K Mitsuya, M Oshimura, A Murata
    posted to human u2af1-rs1 by clearbluespring on 2008-02-06 19:49:48 as **
  • Absence of imprinting in U2AFBPL, a human homologue of the imprinted mouse gene U2afbp-rs.
    Biochem Biophys Res Commun, Vol. 222, No. 1. (6 May 1996), pp. 171-177.
    by RS Pearsall, H Shibata, A Brozowska, K Yoshino, K Okuda, PJ deJong, C Plass, VM Chapman, Y Hayashizaki, WA Held
    posted to human u2af1-rs1 by clearbluespring on 2008-02-06 19:49:26 as **
  • Mouse U2af1-rs1 is a neomorphic imprinted gene.
    Mol Cell Biol, Vol. 17, No. 2. (February 1997), pp. 789-798.
    by A Nabetani, I Hatada, H Morisaki, M Oshimura, T Mukai
    posted to u2af1-rs1 by clearbluespring on 2008-02-06 19:49:05 as **
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