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cthachuks library [26 articles]

Nye artikler sendt til cthachuks bibliotek.
  • More complete gene silencing by fewer siRNAs: transparent optimized design and biophysical signature
    Nucl. Acids Res., Vol. 35, No. 2. (28 January 2007), pp. 433-440.
    by Istvan Ladunga
    posted to svm sirna machine-learning design by cthachuk on 2007-01-31 07:57:49 as *** along with 1 person mtagaya
  • The approximability of the String Barcoding problem
    Algorithms for Molecular Biology, Vol. 1 (08 August 2006), 12.
    by Giuseppe Lancia, Romeo Rizzi
    posted to sequences complexity by cthachuk on 2007-01-30 07:08:27 as ****
  • From The Cover: Triggered amplification by hybridization chain reaction
    PNAS, Vol. 101, No. 43. (26 October 2004), pp. 15275-15278.
    by Robert M Dirks, Niles A Pierce
    posted to no-tag by cthachuk on 2006-12-02 17:58:11 as ** along with 2 people stsaft Hosna
  • Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities.
    Nat Biotechnol (24 September 2006)
    by Michael F F Berger, Anthony A A Philippakis, Aaron M M Qureshi, Fangxue S S He, Preston W W Estep, Martha L L Bulyk
    posted to di-bruijn k-mer oligo-design by cthachuk on 2006-12-01 18:45:50 as ** along with 7 people and 1 group kristallreiner jfr dpollard stsaft maldi olympos yevishere EisenLab
  • DFold: PCR design that minimizes secondary structure and optimizes downstream genotyping applications
    Human Mutation, Vol. 24, No. 1. (2004), pp. 1-8.
    by David Fredman, M Jobs, L Strömqvist, AJ Brookes
    posted to oligo-design software by cthachuk on 2006-09-10 22:46:08 as **
  • GeMS: an advanced software package for designing synthetic genes
    Nucleic Acids Research, Vol. 33, No. 9. (2005), pp. 3011-3016.
    by Sebastian Jayaraj, Ralph Reid, Daniel V Santi
    posted to gene-synthesis oligo-design software by cthachuk on 2006-09-10 22:34:43 as **
  • GeneDesign: Rapid, automated design of multikilobase synthetic genes
    Genome Res., Vol. 16, No. 4. (1 April 2006), pp. 550-556.
    by Sarah M Richardson, Sarah J Wheelan, Robert M Yarrington, Jef D Boeke
    posted to gene-synthesis oligo probe-design by cthachuk on 2006-09-10 22:30:01 as ** along with 1 person Olaf_Ilzins
  • Gene2Oligo: oligonucleotide design for in vitro gene synthesis.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by JM Rouillard, W Lee, G Truan, X Gao, X Zhou, E Gulari
    posted to no-tag by cthachuk on 2006-09-10 22:27:51 as ** along with 1 person and 1 group condon beta
  • OligoArray: genome-scale oligonucleotide design for microarrays
    Bioinformatics, Vol. 18, No. 3. (1 March 2002), pp. 486-487.
    by Jean-Marie Rouillard, Christopher J Herbert, Michael Zuker
    posted to oligo probe-design by cthachuk on 2006-09-10 22:25:05 as **
  • Rational design of DNA sequences for nanotechnology, microarrays and molecular computers using Eulerian graphs
    Nucl. Acids Res., Vol. 32, No. 15. (27 August 2004), pp. 4630-4645.
    by Petr Pancoska, Zdenek Moravek, Ute M Moll
    posted to euler-graphs oligo probe-design by cthachuk on 2006-09-10 21:59:11 as ** along with 1 person stsaft
  • Design of nucleic acid sequences for DNA computing based on a thermodynamic approach
    Nucleic Acids Research, Vol. 33, No. 3. (2005), pp. 903-911.
    by Fumiaki Tanaka, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi
    posted to oligo probe-design by cthachuk on 2006-09-10 21:55:17 as ** along with 1 person stsaft
  • YODA: selecting signature oligonucleotides
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1365-1370.
    by Eric K Nordberg
    posted to oligo probe-design by cthachuk on 2006-09-10 21:52:15 as ** along with 2 people stsaft nedwards
  • miBLAST: scalable evaluation of a batch of nucleotide sequence queries with BLAST
    Nucleic Acids Research, Vol. 33, No. 13. (2005), pp. 4335-4344.
    by You J Kim, Andrew Boyd, Brian D Athey, Jignesh M Patel
    posted to blast oligo-design by cthachuk on 2006-09-10 21:50:54 as ** along with 2 people jyuh blackbart
  • Design of long oligonucleotide probes for functional gene detection in a microbial community
    Bioinformatics, Vol. 21, No. 22. (15 November 2005), pp. 4092-4100.
    by Won-Hyong Chung, Sung-Keun Rhee, Jin-Woo Bae, Zhe-Xue Quan, Yong-Ha Park
    posted to oligo probe-design by cthachuk on 2006-09-10 21:48:59 as ** along with 3 people mcox stsaft GeeSharpMinor
  • Selection of optimal oligonucleotide probes for microarrays using multiple criteria, global alignment and parameter estimation
    Nucleic Acids Research, Vol. 33, No. 19. (2005), pp. 6114-6123.
    by Xingyuan Li, Zhili He, Jizhong Zhou
    posted to oligo by cthachuk on 2006-09-10 21:47:14 as ** along with 2 people stsaft GeeSharpMinor
  • How do RNA folding algorithms work?
    Nature Biotechnology, Vol. 22, No. 11., 1457.
    by Sean R Eddy
    posted to dynamic-programming folding primer rna by cthachuk on 2006-09-08 00:48:05 as read along with 10 people and 2 groups austin cambray evaf marcius tardigrade mtagaya 3times3 magnolia maralena guxiyou BioinfoCIPF SGU-CIPF
  • Predicting RNA secondary structure by free energy minimization
    Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta) (May 2006), pp. 1-9.
    by David Mathews
    posted to folding review rna structure by cthachuk on 2006-09-05 22:01:50 as read along with 5 people and 3 groups marcius condon Hosna hesam apop beta BioinfoCIPF SGU-CIPF
  • Secondary Structure Prediction of Interacting RNA Molecules
    Journal of Molecular Biology, Vol. 345, No. 5., pp. 987-1001.
    by Mirela Andronescu, Zhi C Zhang, Anne Condon
    posted to folding rna software structure by cthachuk on 2006-09-05 21:52:31 as ** along with 4 people and 2 groups marcius eckart_bindewald Hosna physics BioinfoCIPF SGU-CIPF
  • Beyond Mfold: Recent advances in RNA bioinformatics.
    J Biotechnol (9 March 2006)
    by Jens Reeder, Matthias Höchsmann, Marc Rehmsmeier, Björn Voss, Robert Giegerich
    posted to folding review rna by cthachuk on 2006-09-05 21:10:03 as ** along with 12 people and 4 groups reyez marcius eckart_bindewald tardigrade andersbj arcticrasta mtagaya condon Hosna Eonwe stajich physics microRNA beta BioinfoCIPF SGU-CIPF
  • Revolutions in RNA Secondary Structure Prediction
    Journal of Molecular Biology, Vol. 359, No. 3. (9 June 2006), pp. 526-532.
    by David H Mathews
    posted to folding review rna by cthachuk on 2006-09-05 21:06:15 as read along with 9 people and 2 groups austin winterschlaefer marcius arcticrasta penka Eonwe emidio_capriotti physics maralena BioinfoCIPF SGU-CIPF
  • The language of RNA: a formal grammar that includes pseudoknots.
    Bioinformatics, Vol. 16, No. 4. (April 2000), pp. 334-340.
    by E Rivas, SR Eddy
    posted to folding pseudoknots rna by cthachuk on 2006-09-05 21:04:38 as ** along with 3 people and 1 group evaf condon Hosna beta
  • A new algorithm for RNA secondary structure design.
    J Mol Biol, Vol. 336, No. 3. (20 February 2004), pp. 607-624.
    by M Andronescu, AP Fejes, F Hutter, HH Hoos, A Condon
    posted to design rna by cthachuk on 2006-09-05 20:53:11 as ** along with 5 people and 4 groups marcius eckart_bindewald gane5h mgaldzic smallbadguy 18th-century_history_culture_and_society BioinfoCIPF SGU-CIPF CHIP
  • OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach
    Nucl. Acids Res., Vol. 31, No. 12. (15 June 2003), pp. 3057-3062.
    by Jean-Marie Rouillard, Michael Zuker, Erdogan Gulari
    posted to design oligo by cthachuk on 2006-09-05 20:50:33 as read along with 4 people stsaft malcook nedwards yoanjacquemin
  • RNAsoft: A suite of RNA secondary structure prediction and design software tools.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3416-3422.
    by M Andronescu, R Aguirre-Hernández, A Condon, HH Hoos
    posted to design rna software structure by cthachuk on 2006-09-05 20:46:25 as *** along with 6 people and 4 groups marcius eckart_bindewald stsaft Hosna mgaldzic stajich BioinfoCIPF SGU-CIPF CHIP Berkeley Mycology
  • Analysis of internal loops within the RNA secondary structure in almost quadratic time
    Bioinformatics, Vol. 22, No. 11. (1 June 2006), pp. 1317-1324.
    by Ogurtsov, Y Aleksey, Shabalina, A Svetlana, Kondrashov, S Alexey, Roytberg, A Mikhail
    posted to rna structure by cthachuk on 2006-09-05 20:36:40 as *** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • Pluto: the backlash begins
    Nature, Vol. 442, No. 7106. (30 August 2006), pp. 965-966.
    by Jenny Hogan
    posted to astronomy planet by cthachuk on 2006-09-05 20:31:47 as **
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