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cwbrowns library [40 articles]

Nye artikler sendt til cwbrowns bibliotek.
  • In vivo dynamics of RNA polymerase II transcription.
    Nat Struct Mol Biol (5 August 2007)
    by Xavier Darzacq, Yaron Shav-Tal, Valeria de Turris, Yehuda Brody, Shailesh M M Shenoy, Robert D D Phair, Robert H H Singer
    posted to core_transcription_machinery modeling single_molecule by cwbrown on 2007-11-14 00:13:28 as ** along with 5 people and 3 groups jjray dpollard dchughes madhadron margaritis EisenLab G4ID Genetics-of-Gambling
  • Neural Tissue in Ascidian Embryos Is Induced by FGF9/16/20, Acting via a Combination of Maternal GATA and Ets Transcription Factors
    Cell, Vol. 115, No. 5. (26 November 2003), pp. 615-627.
    by Vincent Bertrand, Clare Hudson, Danielle Caillol, Cornel Popovici, Patrick Lemaire
    posted to ciona enhancer_function by cwbrown on 2007-11-08 00:45:10 as ** along with 1 group EisenLab
  • Genomic cis-regulatory logic: experimental and computational analysis of a sea urchin gene.
    Science, Vol. 279, No. 5358. (20 March 1998), pp. 1896-1902.
    by CH Yuh, H Bolouri, EH Davidson
    posted to enhancer_function sea_urchin by cwbrown on 2007-11-08 00:41:35 as ** along with 1 group EisenLab
  • Deletion of Ultraconserved Elements Yields Viable Mice
    PLoS Biology, Vol. 5, No. 9. (1 September 2007), e234.
    by Nadav Ahituv, Yiwen Zhu, Axel Visel, Amy Holt, Veena Afzal, Len A Pennacchio, Edward M Rubin
    posted to enhancer_function mammals ultraconserved_elements by cwbrown on 2007-11-08 00:37:58 as read along with 7 people and 3 groups balicea dchughes djkt lp2 cabbagezs Stew gjuggler EisenLab G4ID Genetics-of-Gambling
  • Tissue-specific transcriptional regulation has diverged significantly between human and mouse
    Nature Genetics, Vol. 39, No. 6. (21 May 2007), pp. 730-732.
    by Duncan T Odom, Robin D Dowell, Elizabeth S Jacobsen, William Gordon, Timothy W Danford, Kenzie D Macisaac, Alexander P Rolfe, Caitlin M Conboy, David K Gifford, Ernest Fraenkel
    posted to chip-chip mammals by cwbrown on 2007-11-08 00:36:45 as read along with 9 people and 4 groups dpollard gpalidwor dchughes djkt cjeans maximilianh fpattyn caseybrown yevishere EisenLab G4ID Genetics-of-Gambling cis-regulatory-evolution
  • Which evolutionary processes influence natural genetic variation for phenotypic traits?
    Nat Rev Genet, Vol. 8, No. 11. (November 2007), pp. 845-856.
    by Thomas Mitchell-Olds, John H Willis, David B Goldstein
    posted to molecular_evolution phenotypic_evolution population_genetics review by cwbrown on 2007-11-08 00:35:36 as ** along with 2 people and 1 group zwang ryanraaum EisenLab
  • Genomic profiling and expression studies reveal both positive and negative activities for the Drosophila Myb MuvB/dREAM complex in proliferating cells
    Genes Dev. (31 October 2007), gad.1600107.
    by Daphne Georlette, Soyeon Ahn, David M Macalpine, Evelyn Cheung, Peter W Lewis, Eileen L Beall, Stephen P Bell, Terry Speed, Robert J Manak, Michael R Botchan
    posted to dna_replication transcriptional_regulatory_complex by cwbrown on 2007-11-07 21:23:13 as ** along with 1 group EisenLab
  • A Bacterial Effector Acts as a Plant Transcription Factor and Induces a Cell Size Regulator
    Science, Vol. 318, No. 5850. (26 October 2007), pp. 648-651.
    by Sabine Kay, Simone Hahn, Eric Marois, Gerd Hause, Ulla Bonas
    posted to plant-pathogen_interaction transcription_factor type_iii_secretion by cwbrown on 2007-11-07 00:59:03 as ** along with 1 person and 1 group saru EisenLab
  • Transcription of histone gene cluster by differential core-promoter factors
    Genes Dev. (31 October 2007), gad.1608807.
    by Yoh Isogai, Sunduz Keles, Matthias Prestel, Andreas Hochheimer, Robert Tjian
    posted to core_transcription_machinery transcriptional_regulatory_complex by cwbrown on 2007-11-07 00:37:47 as ** along with 2 people and 1 group sebastien_vigneau epigenetics EisenLab
  • Protein-Protein Interactions Dominate the Assembly Thermodynamics of a Transcription Repression Complex
    Biochemistry (1 November 2007)
    by H Zhao, E Streaker, W Pan, D Beckett
    posted to dna_binding e_coli thermodynamics transcriptional_regulatory_complex by cwbrown on 2007-11-07 00:36:20 as ** along with 1 group EisenLab
  • A Gene Regulatory Network Subcircuit Drives a Dynamic Pattern of Gene Expression
    Science, Vol. 318, No. 5851. (2 November 2007), pp. 794-797.
    by Joel Smith, Christina Theodoris, Eric H Davidson
    posted to enhancer_function sea_urchin by cwbrown on 2007-11-07 00:31:42 as ** along with 5 people and 1 group lshaw shigepong zwang heliopais hpaces EisenLab
  • Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans
    PLoS Biology, Vol. 5, No. 11. (1 November 2007), e310.
    by David J Begun, Alisha K Holloway, Kristian Stevens, Ladeana W Hillier, Yu-Ping Poh, Matthew W Hahn, Phillip M Nista, Corbin D Jones, Andrew D Kern, Colin N Dewey, Lior Pachter, Eugene Myers, Charles H Langley
    posted to population_genetics whole_genome by cwbrown on 2007-11-07 00:29:37 as ** along with 3 people and 3 groups Neeperando xingxu caseybrown Notre Dame Bioinformatics Computational-Genomics EisenLab
  • A sex-ratio Meiotic Drive System in Drosophila simulans. II: An X-linked Distorter
    PLoS Biology, Vol. 5, No. 11. (1 November 2007), e293.
    by Yun Tao, Luciana Araripe, Sarah B Kingan, Yeyan Ke, Hailian Xiao, Daniel L Hartl
    posted to meiotic_drive sex_ratio_evolution by cwbrown on 2007-11-07 00:26:43 as ** along with 1 group EisenLab
  • A sex-ratio Meiotic Drive System in Drosophila simulans. I: An Autosomal Suppressor
    PLoS Biology, Vol. 5, No. 11. (1 November 2007), e292.
    by Yun Tao, John P Masly, Luciana Araripe, Yeyan Ke, Daniel L Hartl
    posted to meiotic_drive sex_ratio_evolution by cwbrown on 2007-11-07 00:26:01 as ** along with 1 group EisenLab
  • Chromatin remodeling: insights and intrigue from single-molecule studies
    Nature Structural & Molecular Biology, Vol. 14, No. 11. (05 November 2007), pp. 989-996.
    by Bradley R Cairns
    posted to chromatin chromatin_remodeling review single_molecule by cwbrown on 2007-11-07 00:21:03 as ** along with 2 people and 2 groups skoch3 zhlei Koch_Lab EisenLab
  • Gene regulation through nuclear organization
    Nature Structural & Molecular Biology, Vol. 14, No. 11. (05 November 2007), pp. 1049-1055.
    by Tom Sexton, Heiko Schober, Peter Fraser, Susan M Gasser
    posted to chromatin review subnuclear_localization by cwbrown on 2007-11-07 00:19:33 as ** along with 2 people and 1 group sebastien_vigneau harry_fht EisenLab
  • Functional Specificity of a Hox Protein Mediated by the Recognition of Minor Groove Structure
    Cell, Vol. 131, No. 3. (2 November 2007), pp. 530-543.
    by Rohit Joshi, Jonathan M Passner, Remo Rohs, Rinku Jain, Alona Sosinsky, Michael A Crickmore, Vinitha Jacob, Aneel K Aggarwal, Barry Honig, Richard S Mann
    posted to dna_binding homeobox structure by cwbrown on 2007-11-07 00:16:47 as ** along with 2 people and 1 group blobbybirdman oelemento EisenLab
  • A Universal Framework for Regulatory Element Discovery across All Genomes and Data Types.
    Mol Cell, Vol. 28, No. 2. (26 October 2007), pp. 337-350.
    by O Elemento, N Slonim, S Tavazoie
    posted to enhancer_prediction motif_finding by cwbrown on 2007-11-06 23:11:19 as ** along with 12 people and 2 groups ana brant aswin cjeans zwang cabbagezs nklee maximilianh idonaldson sb_journal_club kristen barwil EisenLab Motif Discovery
  • Phenotypic and transcriptional response to selection for alcohol sensitivity in Drosophila melanogaster
    Genome Biology, Vol. 8 (31 October 2007), R231.
    by Tatiana V Morozova, Robert RH Anholt, Trudy FC Mackay
    posted to alcohol directed_evolution gene_expression_evolution by cwbrown on 2007-11-06 23:08:56 as ** along with 1 group EisenLab
  • Detecting Coevolution in and among Protein Domains
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e211.
    by Chen-Hsiang Yeang, David Haussler
    posted to algorithm coevolution pfam protein_domains by cwbrown on 2007-11-06 21:29:42 as *** along with 1 group EisenLab
  • Competitive speed eating: truth and consequences.
    AJR Am J Roentgenol, Vol. 189, No. 3. (September 2007), pp. 681-686.
    by MS Levine, G Spencer, A Alavi, DC Metz
    posted to gastroenterology speed_eating by cwbrown on 2007-08-30 17:49:31 as ** along with 1 group EisenLab
  • Transcription factor concentrations versus binding site affinities in the yeast S. cerevisiae.
    Phys Biol, Vol. 4, No. 2. (June 2007), pp. 134-143.
    by E Aurell, AF d'Hérouël, C Malmnäs, M Vergassola
    posted to dna_binding_affinity transcription_factor yeast by cwbrown on 2007-08-10 18:23:12 as ** along with 1 person and 1 group nklee EisenLab
  • Lehninger Principles of Biochemistry, Fourth Edition
    (23 April 2004)
    by David L Nelson, Michael M Cox
    posted to lab_library by cwbrown on 2007-05-16 23:23:25 as ** along with 1 person and 1 group dherkova EisenLab
  • Molecular Biology of the Cell, Fourth Edition
    by Bruce Alberts, Alexander Johnson, Julian Lewis, Martin Raff, Keith Roberts, Peter Walter
    posted to lab_library by cwbrown on 2007-05-16 23:21:17 as ** along with 5 people and 3 groups jermth dherkova rhem1224 zlu larios EisenLab TCR_Signaling SysbioMPI-TCells
  • Proteins: Structures and Molecular Properties
    (15 August 1992)
    by Thomas E Creighton
    posted to lab_library by cwbrown on 2007-05-16 23:20:21 as ** along with 1 person and 1 group edvin EisenLab
  • Developmental Biology, Eighth Edition (Developmental Biology)
    (24 March 2006)
    by Scott F Gilbert
    posted to lab_library by cwbrown on 2007-05-16 23:17:39 as ** along with 1 group EisenLab
  • MotifCombinator: a web-based tool to search for combinations of cis-regulatory motifs
    BMC Bioinformatics, Vol. 8 (22 March 2007), 100.
    by Mamoru Kato, Tatsuhiko Tsunoda
    posted to combinatorial_regulation motif_finding software by cwbrown on 2007-03-29 22:22:57 as ** along with 3 people and 1 group isimpson nklee idonaldson EisenLab
  • Quantifying DNA-protein binding specificities by using oligonucleotide mass tags and mass spectroscopy
    PNAS, Vol. 104, No. 9. (27 February 2007), pp. 3061-3066.
    by Lingang Zhang, Simon Kasif, And C Cantor
    posted to dna_binding mass_spec method transcription_factor by cwbrown on 2007-03-29 22:07:00 as ** along with 2 people and 1 group jyuh zwang EisenLab
  • Translational and rotational settings of H2A.Z nucleosomes across the Saccharomycescerevisiae genome
    Nature, Vol. 446, No. 7135., pp. 572-576.
    by Istvan Albert, Travis N Mavrich, Lynn P Tomsho, Ji Qi, Sara J Zanton, Stephan C Schuster, Franklin B Pugh
    posted to chromatin histone_variants nucleosome_mapping by cwbrown on 2007-03-29 21:13:37 as ** along with 2 people and 1 group vega lusk EisenLab
  • Predicting tissue-specific enhancers in the human genome.
    Genome Res (8 January 2007)
    by Len A A Pennacchio, Gabriela G G Loots, Marcelo A A Nobrega, Ivan Ovcharenko
    posted to enhancer_prediction human by cwbrown on 2007-03-29 21:11:34 as ** along with 5 people and 1 group indigoviolet maximilianh heliopais roys barwil EisenLab
  • Quantifying similarity between motifs
    Genome Biology, Vol. 8 (26 February 2007), R24.
    by Shobhit Gupta, John A Stamatoyannopoulos, Timothy L Bailey, William S Noble
    posted to method motif_comparison motif_finding by cwbrown on 2007-03-29 21:08:57 as ** along with 3 people and 2 groups grahamc nklee gracio EisenLab ParkinsonLab_at_MaRS
  • Origin and diversification of the basic helix-loop-helix gene family in metazoans: insights from comparative genomics
    BMC Evolutionary Biology, Vol. 7 (02 March 2007), 33.
    by Elena Simionato, Valerie Ledent, Gemma Richards, Morgane Thomas-Chollier, Pierre Kerner, David Coornaert, Bernard M Degnan, Michel Vervoort
    posted to evolution helix_loop_helix protein_families transcription_factor by cwbrown on 2007-03-29 21:06:28 as ** along with 2 people and 1 group syoung11 zwang EisenLab
  • H2A.Z-Mediated Localization of Genes at the Nuclear Periphery Confers Epigenetic Memory of Previous Transcriptional State
    PLoS Biology, Vol. 5, No. 4. (1 April 2007), e81.
    by Donna G Brickner, Ivelisse Cajigas, Yvonne Fondufe-Mittendorf, Sara Ahmed, Pei-Chih Lee, Jonathan Widom, Jason H Brickner
    posted to chromatin histone_variants subnuclear_localization transcriptional_memory by cwbrown on 2007-03-29 21:04:23 as ** along with 1 group EisenLab
  • Phenotypic Plasticity in Drosophila Pigmentation Caused by Temperature Sensitivity of a Chromatin Regulator Network
    PLoS Genetics, Vol. 3, No. 2. (1 February 2007), e30.
    by Jean-Michel Gibert, Frédérique Peronnet, Christian Schlötterer
    posted to no-tag by cwbrown on 2007-03-29 20:51:41 as ** along with 1 person and 1 group brant EisenLab
  • Analysis of In-Vivo LacR-Mediated Gene Repression Based on the Mechanics of DNA Looping.
    PLoS ONE, Vol. 1 (2006)
    by Y Zhang, AE McEwen, DM Crothers, SD Levene
    posted to dna_binding dna_looping e_coli transcription_factor by cwbrown on 2007-03-29 20:46:46 as ** along with 1 group EisenLab
  • DNA Familial Binding Profiles Made Easy: Comparison of Various Motif Alignment and Clustering Strategies
    PLoS Computational Biology, Vol. preprint, No. 2007. (1 February 2007), e61.eor.
    by Shaun Mahony, Philip Auron, Panayiotis Benos
    posted to dna_binding method motifs transcription_factor by cwbrown on 2007-03-29 20:45:40 as ** along with 1 group EisenLab
  • Identification of the Imprinted KLF14 Transcription Factor Undergoing Human-Specific Accelerated Evolution
    PLoS Genetics, Vol. preprint, No. 2007. (1 March 2007), e65.eor.
    by Layla Parker-Katiraee, Andrew R Carson, Takahiro Yamada, Philippe Arnaud, Robert Feil, Sayeda N Abu-Amero, Gudrun Moore, Masahiro Kaneda, George Perry, Anne C Stone, Charles Lee, Makiko Meguro-Horike, Hiroyuki Sasaki, Keiko Kobayashi, Kazuhiko Nakabayashi, Stephen W Scherer
    posted to evolution human transcription_factor by cwbrown on 2007-03-29 20:43:05 as ** along with 2 people and 1 group dpollard epigenetics EisenLab
  • Reprogrammable recognition codes in bicoid homeodomain-DNA interaction.
    Mol Cell Biol, Vol. 20, No. 20. (October 2000), pp. 7673-7684.
    by V Dave, C Zhao, F Yang, CS Tung, J Ma
    posted to dna_binding structure transcription_factor by cwbrown on 2007-03-02 19:36:34 as ** along with 1 group EisenLab
  • A "Silent" Polymorphism in the MDR1 Gene Changes Substrate Specificity.
    Science (21 December 2006)
    by Chava Kimchi-Sarfaty, Jung Mi M Oh, In-Wha W Kim, Zuben E E Sauna, Anna Maria M Calcagno, Suresh V V Ambudkar, Michael M M Gottesman
    posted to synonymous_sites protein_folding protein_evolution by cwbrown on 2007-01-25 20:02:57 as *** along with 7 people and 3 groups bicko dpollard gpalidwor dchughes massivemayhem shawnh msafi EisenLab G4ID Genetics-of-Gambling
  • Theories of adaptation: what they do and don't say.
    Genetica, Vol. 123, No. 1-2. (February 2005), pp. 3-13.
    by HA Orr
    posted to adaptation evolution phenotype sequence theory by cwbrown on 2006-03-11 03:27:06 as ** along with 3 people and 2 groups stevanspringer ryang cmm EisenLab FAB-lab
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