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dagmars observasjonsliste [414 articles]

Nye artikler som matcher dagmars observasjonskriterier
  • Automated learning of generative models for subcellular location: Building blocks for systems biology
    Cytometry Part A, Vol. 71A, No. 12. (2007), pp. 978-990.
    by Ting Zhao, Robert F Murphy
    posted to no-tag by mattis23 to the group dIEMoSIRIS on 2008-08-18 11:40:51 as ** along with 1 person frohike
  • A Graphical Representation for the Stochastic Pi-calculus
    Bioconcur'05 (01 August 2005)
    by Andrew Phillips, Luca Cardelli
    posted to stochastic pi-calculus pi cardelli calculus by Grobi to the group dIEMoSIRIS on 2008-07-20 16:13:18 as ***
  • BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains.
    Bioinformatics (Oxford, England), Vol. 20, No. 17. (22 November 2004), pp. 3289-3291.
    by ML Blinov, JR Faeder, B Goldstein, WS Hlavacek
    posted to no-tag by mattis23 to the group dIEMoSIRIS on 2008-05-28 08:30:06 as ** along with 1 group MoSi-Rostock
  • Modeling and querying biomolecular interaction networks
    Theor. Comput. Sci., Vol. 325, No. 1. (September 2004), pp. 25-44.
    by Nathalie Chabrier-Rivier, Marc Chiaverini, Vincent Danos, Fran\ccois Fages, Vincent Schächter
    posted to no-tag by mattis23 to the group dIEMoSIRIS on 2008-03-31 13:42:44 as **** along with 1 group MoSi-Rostock
  • A Spatial Extension to the [pi] Calculus
    Electronic Notes in Theoretical Computer Science, Vol. 194, No. 3. (20 January 2008), pp. 133-148.
    by Mathias John, Roland Ewald, Adelinde M Uhrmacher
    posted to no-tag by mattis23 to the group dIEMoSIRIS on 2008-03-31 13:30:56 as * along with 1 person and 1 group Grobi MoSi-Rostock
  • Gene Regulation in the Pi Calculus: Simulating Cooperativity at the Lambda Switch
    Transactions on Computational Systems Biology VII (2006), pp. 24-55.
    by Céline Kuttler, Joachim Niehren
    posted to no-tag by mattis23 to the group dIEMoSIRIS on 2008-03-13 19:14:04 as read along with 1 group MoSi-Rostock
  • A Stochastic Pi Calculus for Concurrent Objects
    Algebraic Biology (2007), pp. 232-246.
    by Céline Kuttler, Cédric Lhoussaine, Joachim Niehren
    posted to no-tag by mattis23 to the group dIEMoSIRIS on 2008-03-13 19:07:02 as read
  • Why most published research findings are false.
    PLoS Med, Vol. 2, No. 8. (August 2005)
    by JP Ioannidis
  • Diffusion control of protein phosphorylation in signal transduction pathways.
    Biochem J, Vol. 350 Pt 3 (15 September 2000), pp. 901-907.
    by BN Kholodenko, GC Brown, JB Hoek
    posted to spatial signalling modelling mapk cascade by lenov to the group compneur on 2007-09-20 10:59:08 as read
  • Spatial gradients of cellular phospho-proteins.
    FEBS Lett, Vol. 457, No. 3. (3 September 1999), pp. 452-454.
    by GC Brown, BN Kholodenko
    posted to spatial signalling modelling mapk cascade by lenov to the group compneur on 2007-09-20 10:56:48 as read
  • Four-dimensional organization of protein kinase signaling cascades: the roles of diffusion, endocytosis and molecular motors.
    J Exp Biol, Vol. 206, No. Pt 12. (June 2003), pp. 2073-2082.
    posted to spatial signalling modelling mapk cascade by lenov to the group compneur on 2007-09-20 10:39:37 as read along with 1 person TGerald
  • Transcriptional response of steady-state yeast cultures to transient perturbations in carbon source
    Proceedings of the National Academy of Sciences, Vol. 103, No. 2. (10 January 2006), pp. 389-394.
    by Michal Ronen, David Botstein
    posted to mrna_levels microarray hxt glucose by arne to the group dIEMoSIRIS on 2007-09-19 13:55:13 as ****
  • Bidirectional synaptic plasticity as a consequence of interdependent Ca2+-controlled phosphorylation and dephosphorylation pathways.
    Eur J Neurosci, Vol. 17, No. 12. (June 2003), pp. 2521-2528.
    posted to synapse signalling modelling camkii calmodulin by lenov to the group compneur on 2007-09-17 14:13:56 as read
  • Emergent Properties of Networks of Biological Signaling Pathways
    Science, Vol. 283, No. 5400. (15 January 1999), pp. 381-387.
    posted to synapse signalling modelling camkii calmodulin by lenov to the group compneur on 2007-09-17 14:12:36 as read along with 2 people mattions gurkanbebek
  • THE HEMOGLOBIN SYSTEM. VI. THE OXYGEN DISSOCIATION CURVE OF HEMOGLOBIN
    Journal of Biological Chemistry, Vol. 63 (1925), pp. 529-545.
    posted to cooperativity by lenov to the group compneur on 2007-09-17 13:10:53 as read
  • An amplified sensitivity arising from covalent modification in biological systems.
    Proc Natl Acad Sci U S A, Vol. 78, No. 11. (November 1981), pp. 6840-6844.
    posted to ultrasensitivity model covalent by lenov to the group compneur on 2007-09-16 01:26:12 as read along with 4 people rklancer monod jjray jbchang
  • Developmental regulation of nicotinic ACh receptor subunit mRNAs in the rat central and peripheral nervous systems.
    J Neurosci, Vol. 15, No. 3 Pt 1. (March 1995), pp. 1912-1939.
    by M Zoli, N Le Novère, JA Hill, JP Changeux
    posted to nicotinic nachrs ish by lenov to the group compneur on 2007-09-16 01:15:09 as read
  • Promoter elements conferring neuron-specific expression of the beta 2-subunit of the neuronal nicotinic acetylcholine receptor studied in vitro and in transgenic mice.
    Neuroscience, Vol. 69, No. 3. (December 1995), pp. 807-819.
    posted to nicotinic nachrs ish by lenov to the group compneur on 2007-09-16 01:14:05 as read
  • A single (-)-nicotine injection causes change with a time delay in the affinity of striatal D2 receptors for antagonist, but not for agonist, nor in the D2 receptor mRNA levels in the rat substantia nigra.
    Brain Res, Vol. 679, No. 1. (8 May 1995), pp. 157-167.
    by XM Li, M Zoli, UB Finnman, N Le Novère, JP Changeux, K Fuxe
    posted to nicotinic nachrs ish dopamine by lenov to the group compneur on 2007-09-16 01:03:13 as read
  • Abnormal avoidance learning in mice lacking functional high-affinity nicotine receptor in the brain.
    Nature, Vol. 374, No. 6517. (2 March 1995), pp. 65-67.
    posted to nicotinic nachrs ko by lenov to the group compneur on 2007-09-16 01:02:04 as read
  • A kinetic mechanism for nicotinic acetylcholine receptors based on multiple allosteric transitions.
    Biol Cybern, Vol. 75, No. 5. (November 1996), pp. 361-379.
    posted to nicotinic nachrs cooperativity allostery by lenov to the group compneur on 2007-09-16 00:51:01 as read
  • ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL.
    J Mol Biol, Vol. 12 (May 1965), pp. 88-118.
    by J MONOD, J WYMAN, JP CHANGEUX
    posted to model cooperativity biochemistry allostery by lenov to the group compneur on 2007-09-14 08:32:23 as read along with 1 person lna
  • A composability lexicon
    Proceedings of the Spring 2003 Simulation Interoperability Workshop (2003), pp. 181-187.
    by MD Petty, EW Weisel
    posted to interoperability composition composability by carmaus to the group dIEMoSIRIS on 2007-08-29 16:05:54 as **** along with 1 group MoSi-Rostock
  • Dynamic complex formation during the yeast cell cycle.
    Science, Vol. 307, No. 5710. (4 February 2005), pp. 724-727.
  • A Multi-Formalism Modeling Composability Framework: Agent and Discrete-Event Models
    (2005), pp. 249-256.
    by Hessam Sarjoughian, Dongping Huang
  • Agreeing to Disagree
    The Annals of Statistics, Vol. 4, No. 6. (1976), pp. 1236-1239.
    by Robert J Aumann
    posted to game_theory by arne to the group dIEMoSIRIS on 2007-07-31 12:48:00 as *** along with 2 people iyerkri toomash
  • Robust global sensitivity in multiple enzyme cascade system explains how the downstream cascade structure may remain unaffected by cross-talk.
    FEBS Lett, Vol. 558, No. 1-3. (30 January 2004), pp. 79-84.
    by VK Mutalik, AP Singh, JS Edwards, KV Venkatesh
    posted to cascades by arne to the group dIEMoSIRIS on 2007-07-31 08:47:40 as read
  • Alternative signaling pathways: When, where and why?
    FEBS Letters, Vol. 579, No. 24. (10 October 2005), pp. 5265-5274.
    by Yunchen Gong, Zhaolei Zhang
    posted to specificity signaling by carmaus to the group dIEMoSIRIS on 2007-07-31 08:08:05 as ** along with 1 person and 1 group arne MoSi-Rostock
  • Model composability: formulating a research thrust: composable simulations
    (2000), pp. 1577-1584.
    by Stephen Kasputis, Henry C Ng
  • Architectural mismatch or why it's hard to build systems out of existing parts
    (1995), pp. 179-185.
    by David Garlan, Robert Allen, John Ockerbloom
  • Stochastic simulation of chemical kinetics.
    Annu Rev Phys Chem, Vol. 58 (2007), pp. 35-55.
    by DT Gillespie
  • Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell.
    Curr Opin Cell Biol, Vol. 15, No. 2. (April 2003), pp. 221-231.
    by JJ Tyson, KC Chen, B Novak
  • little b - a language for modular, shareable models of biological systems
    (2004)
    posted to virtual_cell modularity littleb by carmaus to the group dIEMoSIRIS on 2007-07-25 16:42:13 as read along with 1 group MoSi-Rostock
  • Systems biology: its practice and challenges.
    Cell, Vol. 121, No. 4. (20 May 2005), pp. 511-513.
    by A Aderem
  • NetLogo: A Simple Environment for Modeling Complexity
    (2004)
    by Seth Tisue, Uri Wilensky
  • The Multi-Agent Simulation Environment SeSAm
    (April 1998)
    by Franziska Klügl, Frank Puppe
  • MASON: A New Multi-Agent Simulation Toolkit
    (2004)
    by Sean Luke, Claudio Cioffi-Revilla, Liviu Panait, Keith Sullivan
    posted to simulation-system simulation mason mas by roland_ewald to the group dIEMoSIRIS on 2007-07-20 10:00:21 as ** along with 1 group MoSi-Rostock
  • Noise-Induced Min Phenotypes in E. coli
    PLoS Computational Biology, Vol. 2, No. 6. (1 June 2006), e80.
    by David Fange, Johan Elf
    posted to nsm model example by carmaus to the group dIEMoSIRIS on 2007-07-17 15:11:58 as ** along with 1 group MoSi-Rostock
  • An Introduction to Stochastic Processes with Biology Applications
    (28 April 2003)
    by Linda J Allen
  • FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps.
    Bioinformatics, Vol. 19, No. 2. (22 January 2003), pp. 261-269.
    by S Klamt, J Stelling, M Ginkel, ED Gilles
    posted to sysbio stoichiometry by carmaus to the group dIEMoSIRIS on 2007-07-13 10:03:25 as ** along with 2 people and 1 group alexg balicea MoSi-Rostock
  • Discrete Event Modeling and Simulation in Systems Biology
    Journal of Simulation, Vol. 1, No. 2. (2007), pp. 81-96.
    by Roland Ewald, Carsten Maus, Arndt Rolfs, Adelinde M Uhrmacher
  • cPath: open source software for collecting, storing, and querying biological pathways
    BMC Bioinformatics, Vol. 7 (13 November 2006), 497.
    by Ethan G Cerami, Gary D Bader, Benjamin Gross, Chris Sander
  • UML as a cell and biochemistry modeling language.
    Biosystems, Vol. 80, No. 3. (June 2005), pp. 283-302.
    by K Webb, T White
  • Dynamic Models in Biology
    (27 March 2006)
    by Stephen P Ellner, John Guckenheimer
    posted to sysbio modeling dynamic by carmaus to the group dIEMoSIRIS on 2007-07-06 10:58:30 as ** along with 1 group MoSi-Rostock
  • Individual-based Modeling and Ecology (Princeton Series in Theoretical and Computational Biology)
    (05 July 2005)
    by Volker Grimm, Steven F Railsback
  • The Anatomy of the Grid: Enabling Scalable Virtual Organizations
    Int. J. High Perform. Comput. Appl., Vol. 15, No. 3. (August 2001), pp. 200-222.
    by Ian Foster, Carl Kesselman, Steven Tuecke
  • The Physiology of the Grid: An Open Grid Services Architecture for Distributed Systems Integration
    (2002)
    by I Foster, C Kesselman, J Nick, S Tuecke
  • Local Time Warp: An Implementation and Performance Analysis
    (2007), pp. 163-170.
    by Hassan Rajaei
  • A Flexible Dynamic Partitioning Algorithm for Optimistic Distributed Simulation
    (2007), pp. 219-228.
    by Patrick Peschlow, Tobias Honecker, Peter Martini
  • Macro-Micro Economic System Simulation
    (2007), pp. 105-112.
    by BSS Onggo, K Kusano, T Sato
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