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dbikards library [197 articles]

Nye artikler sendt til dbikards bibliotek.
  • Robust, Tunable Biological Oscillations from Interlinked Positive and Negative Feedback Loops
    Science, Vol. 321, No. 5885. (4 July 2008), pp. 126-129.
    by Tony Y Tsai, Yoon S Choi, Wenzhe Ma, Joseph R Pomerening, Chao Tang, James E Ferrell
    posted to synthetic_biology oscillations networks by dbikard on 2008-07-17 11:17:58 as ** along with 5 people and 1 group kentsis Borelli madhadron stringertheory caseybrown SynBioSys
  • Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria.
    Science, Vol. 292, No. 5524. (15 June 2001), pp. 2080-2083.
    by S Kalir, J McClure, K Pabbaraju, C Southward, M Ronen, S Leibler, MG Surette, U Alon
    posted to networks flagella by dbikard on 2008-07-11 17:34:04 as ** along with 2 people nsamways comb
  • Setting the standard in synthetic biology
    Nat Biotech, Vol. 26, No. 7. (July 2008), pp. 771-774.
    by Adam Arkin
    posted to synthetic_biology by dbikard on 2008-07-11 09:49:43 as ** along with 1 person marck
  • New Cloning Vectors with Temperature-Sensitive Replication
    Plasmid, Vol. 41, No. 1. (January 1999), pp. 78-81.
    by Gregory J Phillips
    posted to plasmids by dbikard on 2008-07-02 17:27:47 as **
  • Ten Simple Rules for Organizing a Scientific Meeting
    PLoS Comput Biol, Vol. 4, No. 6. (27 June 2008), e1000080.
    by Manuel Corpas, Nils Gehlenborg, Sarath C Janga, Philip E Bourne
    posted to meetings by dbikard on 2008-06-29 18:31:31 as ** along with 9 people and 2 groups rcrane tharris kristgy Bendewhurst A_Olympia sci91078 Schmidtc balicea dullhunk logics of knowledge Centre de Recherches Interdisciplinaires
  • Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter
    J. Bacteriol., Vol. 177, No. 14. (1 July 1995), pp. 4121-4130.
    by LM Guzman, D Belin, MJ Carson, J Beckwith
    posted to expression_regulation by dbikard on 2008-06-24 09:39:51 as **
  • Structure and function of 59-base element recombination sites associated with mobile gene cassettes.
    Molecular microbiology, Vol. 26, No. 4. (November 1997), pp. 731-745.
    by HW Stokes, DB O'Gorman, GD Recchia, M Parsekhian, RM Hall
    posted to integrons by dbikard on 2008-06-20 14:36:09 as **
  • Inaugural Article: Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli
    Proceedings of the National Academy of Sciences (4 June 2008), 0803151105.
    by Zachary D Blount, Christina Z Borland, Richard E Lenski
    posted to evolution bacteria by dbikard on 2008-06-20 13:17:16 as ** along with 7 people and 1 group jjray adriandefroment MarioPaolucci jobriath OriginalLurch cambray skumagai Bacterial Genome Plasticity
  • Redesigning enzymes based on adaptive evolution for optimal function in synthetic metabolic pathways.
    Chemistry & biology, Vol. 15, No. 6. (June 2008), pp. 607-618.
    by Y Yoshikuni, JA Dietrich, FF Nowroozi, PC Babbitt, JD Keasling
    posted to synthetic_biology metabolic_engineering by dbikard on 2008-06-20 10:52:24 as ** along with 1 group SynBioSys
  • Anticipatory Behavior Within Microbial Genetic Networks
    Science (8 May 2008), 1154456.
    by Ilias Tagkopoulos, Yir-Chung Liu, Saeed Tavazoie
    posted to behaviour bacteria by dbikard on 2008-06-19 16:46:34 as ** along with 7 people and 2 groups stringertheory deanmalmgren jjray djkt skumagai roys brembs Centre de Recherches Interdisciplinaires Bacterial Genome Plasticity
  • Implementing arithmetic and other analytic operations by transcriptional regulation.
    PLoS computational biology, Vol. 4, No. 4. (April 2008)
    by SM Cory, TJ Perkins
    posted to synthetic_biology computational_biology by dbikard on 2008-06-04 18:45:50 as **** along with 4 people and 1 group jjray eskay dquest maximilianh SynBioSys
  • Can a biologist fix a radio?--Or, what I learned while studying apoptosis.
    Cancer Cell, Vol. 2, No. 3. (September 2002), pp. 179-182.
    by Y Lazebnik
    posted to fun by dbikard on 2008-06-04 18:42:01 as ** along with 15 people and 6 groups bayesian leilaperie Tominator balicea mattjb tvdbulck quianominorleo rklancer dbk irenas manduca monod chihchun_chen massivemayhem gisle SynBioSys Centre de Recherches Interdisciplinaires DSTO-CAS ComplexAdaptiveSystems streptomyces dbk-lab
  • Quorum sensing: cell-to-cell communication in bacteria.
    Annu Rev Cell Dev Biol, Vol. 21 (2005), pp. 319-346.
    by CM Waters, BL Bassler
    posted to communication bacteria by dbikard on 2008-06-04 13:54:58 as ** along with 3 people and 1 group superpyrin BUiGEM CareyNadell BUiGEM
  • Electrostatic-undulatory theory of plectonemically supercoiled DNA.
    Biophysical journal, Vol. 76, No. 5. (May 1999), pp. 2502-2519.
    by J Ubbink, T Odijk
    posted to dna_coiling by dbikard on 2008-06-02 17:15:06 as **
  • Retrovirus-delivered siRNA.
    BMC biotechnology, Vol. 2 (28 August 2002)
    by E Devroe, PA Silver
    posted to no-tag by dbikard on 2008-06-02 10:26:57 as **
  • A Microbead-based System for Identifying and Characterizing RNA-Protein Interactions by Flow Cytometry
    Mol Cell Proteomics, Vol. 1, No. 12. (1 December 2002), pp. 922-929.
    by Alexander S Brodsky, Pamela A Silver
    posted to no-tag by dbikard on 2008-06-02 10:25:48 as **
  • Rational design of memory in eukaryotic cells.
    Genes Dev, Vol. 21, No. 18. (15 September 2007), pp. 2271-2276.
    by CM Ajo-Franklin, DA Drubin, JA Eskin, EP Gee, D Landgraf, I Phillips, PA Silver
    posted to synthetic_biology by dbikard on 2008-06-02 10:20:01 as ** along with 3 people and 1 group balabu austin cjeans SynBioSys
  • Designing biological systems.
    Genes Dev, Vol. 21, No. 3. (1 February 2007), pp. 242-254.
    by DA Drubin, JC Way, PA Silver
    posted to synthetic_biology by dbikard on 2008-06-02 10:18:29 as ** along with 5 people and 1 group tmmurali choonpeng hslee snowcrash jonsta247 SynBioSys
  • Enhancement of Cell Type Specificity by Quantitative Modulation of a Chimeric Ligand
    J. Biol. Chem., Vol. 283, No. 13. (28 March 2008), pp. 8469-8476.
    by Pablo Cironi, Ian A Swinburne, Pamela A Silver
    posted to synthetic_biology by dbikard on 2008-06-02 10:17:03 as **
  • Defossiling Fuel: How Synthetic Biology Can Transform Biofuel Production
    ACS Chem. Biol., Vol. 3, No. 1. (18 January 2008), pp. 13-16.
    by David Savage, , Jeffrey Way, Pamela A Silver
    posted to synthetic_biology by dbikard on 2008-06-02 10:15:22 as ** along with 3 people and 1 group austin cambray SciNika SynBioSys
  • Foundations for engineering biology
    Nature, Vol. 438, No. 7067., pp. 449-453.
    by Drew Endy
    posted to synthetic_biology by dbikard on 2008-05-30 13:55:20 as ** along with 9 people and 1 group austin monod jmeppley eweaver perrywoo johncumbers pirapira kevinchannon jonsta247 SynBioSys
  • The Selective Value of Bacterial Shape
    Microbiol. Mol. Biol. Rev., Vol. 70, No. 3. (1 September 2006), pp. 660-703.
    by Kevin D Young
    posted to shape evolution by dbikard on 2008-05-29 15:35:48 as **
  • Design of artificial cell-cell communication using gene and metabolic networks.
    Proc Natl Acad Sci U S A, Vol. 101, No. 8. (24 February 2004), pp. 2299-2304.
    by T Bulter, SG Lee, WW Wong, E Fung, MR Connor, JC Liao
    posted to synthetic_biology communication by dbikard on 2008-05-29 15:19:33 as ** along with 2 people and 2 groups camster rklancer SynBioSys dbk-lab
  • Customized signaling with reconfigurable protein scaffolds
    Nature Biotechnology, Vol. 26, No. 5., pp. 526-528.
    by Patrick Guye, Ron Weiss
    posted to synthetic_biology by dbikard on 2008-05-29 14:13:25 as ** along with 1 group SynBioSys
  • Stochastic simulation of chemical kinetics.
    Annu Rev Phys Chem, Vol. 58 (2007), pp. 35-55.
    by DT Gillespie
    posted to noise model by dbikard on 2008-05-29 13:04:48 as ** along with 3 people and 3 groups jjray pmendes carmaus Centre de Recherches Interdisciplinaires dIEMoSIRIS MoSi-Rostock
  • Microbial Biogeography: From Taxonomy to Traits
    Science, Vol. 320, No. 5879. (23 May 2008), pp. 1039-1043.
    by Jessica L Green, Brendan J Bohannan, Rachel J Whitaker
    posted to bacteria by dbikard on 2008-05-26 15:48:25 as ** along with 5 people and 5 groups dbensasson vaulot stajich jdelcampo djkt iSEEM Centre de Recherches Interdisciplinaires Papers recommended by the Roscoff Plankton Group Berkeley Mycology Microbial-Ecology
  • From the Cover: Extreme polyploidy in a large bacterium
    Proceedings of the National Academy of Sciences, Vol. 105, No. 18. (6 May 2008), pp. 6730-6734.
    by Jennifer E Mendell, Kendall D Clements, Howard J Choat, Esther R Angert
    posted to polyploidy bacteria by dbikard on 2008-05-20 09:36:29 as ** along with 4 people and 3 groups vaulot alexisfjdufresne echinotrix neils Centre de Recherches Interdisciplinaires Papers recommended by the Roscoff Plankton Group Microbial-Ecology
  • Statistical mechanics of supercoiled DNA.
    Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics, Vol. 52, No. 3. (September 1995), pp. 2912-2938.
    by JF Marko, ED Siggia
    posted to dna_coiling by dbikard on 2008-05-14 13:04:06 as **
  • [The importance of synthetic biology.]
    Medecine sciences : M/S, Vol. 24, No. 5. (May 2008), pp. 447-448.
    by M Morange
    posted to synthetic_biology by dbikard on 2008-05-13 09:16:07 as **
  • [First French team success during iGEM Synthetic biology competition.]
    Medecine sciences : M/S, Vol. 24, No. 5. (May 2008), pp. 541-544.
    by David Bikard, François Képès,
    posted to synthetic_biology by dbikard on 2008-05-13 09:15:35 as **
  • Recursive construction of perfect DNA molecules from imperfect oligonucleotides.
    Molecular systems biology, Vol. 4 (2008)
    by G Linshiz, TB Yehezkel, S Kaplan, I Gronau, S Ravid, R Adar, E Shapiro
    posted to synthetic_biology by dbikard on 2008-05-13 09:14:30 as ** along with 2 people and 2 groups austin Ema SynBioSys Centre de Recherches Interdisciplinaires
  • Determination of the Number of Superhelical Turns in Simian Virus 40 DNA by Gel Electrophoresis
    Proceedings of the National Academy of Sciences, Vol. 72, No. 12. (15 December 1975), pp. 4876-4880.
    by Walter Keller
    posted to dna_coiling by dbikard on 2008-05-02 11:00:50 as **
  • The Geometry of Musical Chords
    Science, Vol. 313, No. 5783. (7 July 2006), pp. 72-74.
    by Dmitri Tymoczko
    posted to music by dbikard on 2008-05-02 09:56:37 as ** along with 5 people and 3 groups eyliu livingthingdan cerkut Quotato lp2 Centre de Recherches Interdisciplinaires livingthing contact-id
  • Torsional tension in the DNA double helix measured with trimethylpsoralen in living E. coli cells: analogous measurements in insect and human cells.
    Cell, Vol. 21, No. 3. (October 1980), pp. 773-783.
    by RR Sinden, JO Carlson, DE Pettijohn
    posted to dna_coiling by dbikard on 2008-04-30 15:45:44 as **
  • Electron Microscopy of DNA Crosslinked with Trimethylpsoralen: Test of the Secondary Structure of Eukaryotic Inverted Repeat Sequences
    Proceedings of the National Academy of Sciences, Vol. 73, No. 8. (15 August 1976), pp. 2644-2648.
    by Thomas R Cech, Mary L Pardue
    posted to cruciform by dbikard on 2008-04-30 15:26:37 as **
  • The kinetic properties of cruciform extrusion are determined by DNA base-sequence.
    Nucleic acids research, Vol. 13, No. 5. (11 March 1985), pp. 1443-1465.
    by DM Lilley
    posted to cruciform by dbikard on 2008-04-30 13:09:54 as **
  • Synthetic biology: enormous possibility, exaggerated perils.
    Journal of biological engineering, Vol. 2, No. 1. (25 April 2008)
    by Zachary N Russ
    posted to synthetic_biology by dbikard on 2008-04-30 09:04:52 as **
  • Chromosome structuring limits genome plasticity in Escherichia coli.
    PLoS genetics, Vol. 3, No. 12. (December 2007)
    by E Esnault, M Valens, O Espéli, F Boccard
    posted to chromosome by dbikard on 2008-04-30 08:54:21 as **
  • DNA dynamics vary according to macrodomain topography in the E. coli chromosome
    Molecular Microbiology, Vol. 0, No. 0. (0), pp. ???-???.
    by Olivier Espeli, Romain Mercier, Frederic Boccard
    posted to chromosome by dbikard on 2008-04-30 08:52:49 as ** along with 1 person jjray
  • Evolvability and hierarchy in rewired bacterial gene networks
    Nature, Vol. 452, No. 7189. (17 April 2008), pp. 840-845.
    by Mark Isalan, Caroline Lemerle, Konstantinos Michalodimitrakis, Carsten Horn, Pedro Beltrao, Emanuele Raineri, Mireia Garriga-Canut, Luis Serrano
    posted to systems_biology networks by dbikard on 2008-04-29 09:25:35 as ** along with 17 people and 4 groups aheilbut chad_davis michaelbarton austin AbnerCYH hryk margaritis cactus Garamonfok caseybrown biehl aalibes tmmurali dullhunk neils cmzmasek josedavid BergmanLab SynBioSys Centre de Recherches Interdisciplinaires GEB
  • Long range structural communication between sequences in supercoiled DNA. Sequence dependence of contextual influence on cruciform extrusion mechanism.
    The Journal of biological chemistry, Vol. 263, No. 26. (15 September 1988), pp. 13074-13082.
    by KM Sullivan, AI Murchie, DM Lilley
    posted to dna_coiling cruciform by dbikard on 2008-04-29 08:53:35 as **
  • The anomalous gel migration of a stable cruciform: temperature and salt dependence, and some comparisons with curved DNA.
    Nucleic acids research, Vol. 15, No. 14. (24 July 1987), pp. 5765-5774.
    by S Diekmann, DM Lilley
    posted to cruciform by dbikard on 2008-04-29 08:43:17 as **
  • The facile generation of covalently closed, circular DNAs with defined negative superhelical densities.
    Analytical biochemistry, Vol. 122, No. 2. (15 May 1982), pp. 253-257.
    by CK Singleton, RD Wells
    posted to dna_coiling by dbikard on 2008-04-28 15:49:49 as **
  • Relationship between superhelical density and cruciform formation in plasmid pVH51
    J. Biol. Chem., Vol. 257, No. 11. (10 June 1982), pp. 6292-6295.
    by CK Singleton, RD Wells
    posted to dna_folding dna_coiling cruciform by dbikard on 2008-04-28 15:37:56 as **
  • Simple generation of site-directed point mutations in the Escherichia coli chromosome using Red/ET Recombination
    Microbial Cell Factories, Vol. 7 (24 April 2008), 14.
    by Ralf Heermann, Tim Zeppenfeld, Kirsten Jung
    posted to mutagenesis chromosome by dbikard on 2008-04-28 10:19:16 as **
  • Bacterial outer membrane vesicles and the host-pathogen interaction
    Genes Dev., Vol. 19, No. 22. (15 November 2005), pp. 2645-2655.
    by Meta J Kuehn, Nicole C Kesty
    posted to pathogen vesicle by dbikard on 2008-04-17 07:30:07 as *****
  • Neutral lipid biosynthesis in engineered Escherichia coli: jojoba oil-like wax esters and fatty acid butyl esters.
    Applied and environmental microbiology, Vol. 72, No. 2. (February 2006), pp. 1373-1379.
    by R Kalscheuer, T Stöveken, H Luftmann, U Malkus, R Reichelt, A Steinbüchel
    posted to lipids synthetic_biology by dbikard on 2008-04-10 15:32:49 as **
  • Influence of global DNA topology on cruciform formation in supercoiled DNA.
    Journal of molecular biology, Vol. 338, No. 4. (7 May 2004), pp. 735-743.
    by EA Oussatcheva, J Pavlicek, OF Sankey, RR Sinden, YL Lyubchenko, VN Potaman
    posted to cruciform dna_coiling dna_folding by dbikard on 2008-04-08 15:23:11 as **
  • Effect of DNA supercoiling on the geometry of holliday junctions.
    Biochemistry, Vol. 45, No. 43. (31 October 2006), pp. 12998-13006.
    by AL Mikheikin, AY Lushnikov, YL Lyubchenko
    posted to cruciform dna_coiling by dbikard on 2008-04-08 14:34:21 as **
  • Structure and dynamics of supercoil-stabilized DNA cruciforms.
    Journal of molecular biology, Vol. 280, No. 1. (3 July 1998), pp. 61-72.
    by LS Shlyakhtenko, VN Potaman, RR Sinden, YL Lyubchenko
    posted to cruciform dna_coiling dna_folding by dbikard on 2008-04-08 14:34:12 as **
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