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hryks library [82 articles]

Nye artikler sendt til hryks bibliotek.
  • Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis.
    Science, Vol. 285, No. 5429. (6 August 1999), pp. 901-906.
    by EA Winzeler, DD Shoemaker, A Astromoff, H Liang, K Anderson, B Andre, R Bangham, R Benito, JD Boeke, H Bussey, AM Chu, C Connelly, K Davis, F Dietrich, SW Dow, M El Bakkoury, F Foury, SH Friend, E Gentalen, G Giaever, JH Hegemann, T Jones, M Laub, H Liao, N Liebundguth, DJ Lockhart, A Lucau-Danila, M Lussier, N M'Rabet, P Menard, M Mittmann, C Pai, C Rebischung, JL Revuelta, L Riles, CJ Roberts, P Ross-MacDonald, B Scherens, M Snyder, S Sookhai-Mahadeo, RK Storms, S Véronneau, M Voet, G Volckaert, TR Ward, R Wysocki, GS Yen, K Yu, K Zimmermann, P Philippsen, M Johnston, RW Davis
    posted to essential yeast by hryk on 2008-07-28 02:10:12 as ** along with 7 people pcahan1 balajis jpoyatos ccr cjeans jiny chasmand
  • Statistical mechanics of complex networks
    (6 Jun 2001)
    by Reka Albert, Albert-Laszlo Barabasi
    posted to network review by hryk on 2008-07-22 09:55:42 as ** along with 19 people and 2 groups ansobol jrw bayesian matiasg cmm henningpeters maqbes cerkut sugarexpletive awooga josepe mylit gi0rgi0ne rcrane napoleon1982 Ema maralena Diego_Prada Borelli FAB-lab EntrepreneurialRisks
  • The metabolic world of Escherichia coli is not small.
    Proc Natl Acad Sci U S A, Vol. 101, No. 6. (10 February 2004), pp. 1543-1547.
    by M Arita
    posted to metabolic network by hryk on 2008-07-15 15:27:39 as ** along with 9 people and 3 groups camster PeterCollins riomenajang barry alexg tny azuma dylan77 Ema dbk-lab structural_bioinformatics Bioinformatics
  • Network biology: understanding the cell's functional organization.
    Nat Rev Genet, Vol. 5, No. 2. (February 2004), pp. 101-113.
    by AL Barabási, ZN Oltvai
    posted to network review by hryk on 2008-07-15 14:50:14 as ** along with 34 people and 11 groups camster snuppepuppan dbk greg jyuh LeightonP hununu felciano mague kuhn textoris rhem1224 lfriedl balajis alexg wnpx jknabe adepace nickluscombe bundschu awooga jdiggans jeremymiller uprock timflutre mikaelhuss gcalda grahamc fishtank jayster4 naegele Evangelia heliopais shikin streptomyces spliceml dbk-lab kdl EisenLab TCR_Signaling EBI-regulation SysbioMPI-TCells GeschwindLab generif_paper GeneGo
  • Osprey: a network visualization system.
    Genome Biol, Vol. 4, No. 3. (2003)
    by BJ Breitkreutz, C Stark, M Tyers
    posted to network software tool by hryk on 2008-07-14 18:13:32 as ** along with 7 people and 1 group tdent ianturton ganden Evangelia maralena djsaab renatomilani CHISEL
  • Quantifying robustness of biochemical network models
    BMC Bioinformatics, Vol. 3, No. 1. (2002)
    by Lan Ma, Pablo Iglesias
    posted to network robustness by hryk on 2008-06-30 21:38:33 as **
  • Protein complex prediction via cost-based clustering
    Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 3013-3020.
    by AD King, N Przulj, I Jurisica
    posted to cluster ppi prediction by hryk on 2008-06-30 21:36:17 as ** along with 5 people and 1 group lfriedl maralena cerca carlk ethkim kdl
  • Investigating metabolite essentiality through genome-scale analysis of Escherichia coli production capabilities.
    Bioinformatics (Oxford, England), Vol. 21, No. 9. (1 May 2005), pp. 2008-2016.
    by M Imieliński, C Belta, A Halász, H Rubin
    posted to ecoli essential by hryk on 2008-06-30 21:33:47 as ** along with 1 person JeremyZucker
  • metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella
    Nucleic Acids Research, Vol. 33, No. 4., pp. 1399-1409.
    by W Pinney, W Shirley, A Mcconkey, R Westhead
    posted to network prediction software tool by hryk on 2008-06-30 21:33:22 as ** along with 4 people and 2 groups jmeppley eweaver bsmagic shung Bioinformatics bioinplant
  • Squid - a simple bioinformatics grid.
    BMC Bioinformatics, Vol. 6 (2005)
    by PC Carvalho, RV Glória, AB de Miranda, WM Degrave
    posted to bioinformatics grid by hryk on 2008-06-30 21:32:21 as ** along with 4 people eweaver moborg fisherp tharris
  • A methodology for the structural and functional analysis of signaling and regulatory networks.
    BMC Bioinformatics, Vol. 7, No. 1. (7 February 2006)
    by Steffen Klamt, Julio Saez-Rodriguez, Jonathan A Lindquist, Luca Simeoni, Ernst D Gilles
    posted to analysis method network signaling by hryk on 2008-06-30 21:29:51 as *** along with 3 people and 1 group gokhan cdppublications maralena CDP
  • A node pruning algorithm based on a Fourier amplitude sensitivity test method.
    IEEE transactions on neural networks / a publication of the IEEE Neural Networks Council, Vol. 17, No. 2. (March 2006), pp. 273-293.
    by P Lauret, E Fock, TA Mara
    posted to algorithm graph network by hryk on 2008-06-30 21:27:12 as **
  • An algorithm for modularity analysis of directed and weighted biological networks based on edge-betweenness centrality.
    Bioinformatics (Oxford, England), Vol. 22, No. 24. (15 December 2006), pp. 3106-3108.
    by J Yoon, A Blumer, K Lee
    posted to algorithm cluster graph network by hryk on 2008-06-30 21:25:55 as ** along with 1 person AbnerCYH
  • Cluster conservation as a novel tool for studying protein-protein interactions evolution
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Ofer Rahat, Assif Yitzhaky, Gideon Schreiber
    posted to cluster evolution network ppi by hryk on 2008-06-30 21:22:40 as ** along with 2 people cjeans marti
  • Interactive three-dimensional visualization and contextual analysis of protein interaction networks.
    Journal of proteome research, Vol. 7, No. 1. (January 2008), pp. 104-112.
    by E Ho, R Webber, MR Wilkins
    posted to 3d network software tool by hryk on 2008-06-30 21:22:08 as **
  • METANNOGEN: compiling features of biochemical reactions needed for the reconstruction of metabolic networks.
    BMC systems biology, Vol. 1 (2007)
    by C Gille, S Hoffmann, HG Holzhütter
    posted to metabolic pathway by hryk on 2008-06-30 20:54:14 as **
  • Metabolic network visualization eliminating node redundance and preserving metabolic pathways.
    BMC systems biology, Vol. 1 (2007)
    by R Bourqui, L Cottret, V Lacroix, D Auber, P Mary, MF Sagot, F Jourdan
    posted to metabolic network pathway visualize by hryk on 2008-06-30 20:51:59 as ****
  • The topology of metabolic isotope labeling networks
    BMC Bioinformatics, Vol. 8 (29 August 2007), 315.
    by Michael Weitzel, Wolfgang Wiechert, Katharina Noh
    posted to metabolic network pathway topology by hryk on 2008-06-30 20:48:02 as ***
  • Carbon-fate maps for metabolic reactions.
    Bioinformatics (Oxford, England), Vol. 23, No. 23. (1 December 2007), pp. 3193-3199.
    by F Mu, RF Williams, CJ Unkefer, PJ Unkefer, JR Faeder, WS Hlavacek
    posted to metabolic network pathway by hryk on 2008-06-30 20:46:29 as ****
  • Exploring genetic interactions and networks with yeast
    Nature Reviews Genetics, Vol. 8, No. 6., pp. 437-449.
    by Charles Boone, Howard Bussey, Brenda J Andrews
    posted to essential genetic_interaction network by hryk on 2008-06-30 20:29:28 as ***** along with 5 people balajis zwang carlk jyuh marck
  • Tools for Visually Exploring Biological Networks.
    Bioinformatics (25 August 2007)
    by Matthew Suderman, Michael Hallett
    posted to network software tool by hryk on 2008-06-30 20:18:15 as ** along with 12 people and 3 groups jyuh icases dullhunk sebastien_vigneau grahamc sgoetz cabbagezs cerami loopback007 Pao-Yang schuylrp AlexanderPico ParkinsonLab_at_MaRS TNT Cancer_Stem_Cells
  • Reconstructing networks of pathways via significance analysis of their intersections.
    BMC bioinformatics, Vol. 9 Suppl 4 (2008)
    by M Francesconi, D Remondini, N Neretti, JM Sedivy, LN Cooper, E Verondini, L Milanesi, G Castellani
    posted to network pathway by hryk on 2008-06-30 20:13:58 as ** along with 2 people jyuh maralena
  • Mapping the Gnutella network
    Internet Computing, IEEE, Vol. 6, No. 1. (2002), pp. 50-57.
    by R Matei, A Iamnitchi, P Foster
    posted to gnutella network by hryk on 2008-06-17 10:29:36 as ** along with 2 people matteodellamico muraken
  • An Empirical Analysis of Network Externalities in Peer-To-Peer Music Sharing Networks
    Social Science Research Network Working Paper Series (September 2003)
    by ATIP Asvanund, CLAY Karen, Ramayya Krishnan, Michael D Smith
    posted to no-tag by hryk on 2008-06-17 10:23:55 as ****
  • Bio2RDF: Towards a mashup to build bioinformatics knowledge systems.
    Journal of biomedical informatics (21 March 2008)
    by François Belleau, Marc-Alexandre A Nolin, Nicole Tourigny, Philippe Rigault, Jean Morissette
    posted to mashup tool by hryk on 2008-06-06 12:24:55 as ** along with 5 people fgibson jyuh tharris dullhunk hubcite
  • Imaging the biogenesis of individual HIV-1 virions in live cells
    Nature (25 May 2008)
    by Nolwenn Jouvenet, Paul D Bieniasz, Sanford M Simon
    posted to hiv imaging virus by hryk on 2008-05-28 14:54:41 as ** along with 4 people and 1 group xingxu lechristophe kieran101 wsjames Oxford Virology
  • Reconstruction and Structural Analysis of Metabolic and Regulatory Networks
    Introduction to Systems Biology (2007), pp. 124-146.
    by Hong-Wu Ma, Marcio R Silva, Ji-Bin Sun, Bharani Kumar, An-Ping Zeng
    posted to metabolic network regulatory by hryk on 2008-05-26 01:29:13 as ****
  • The Importance of Bottlenecks in Protein Networks: Correlation with Gene Essentiality and Expression Dynamics
    PLoS Computational Biology, Vol. 3, No. 4. (1 April 2007), e59.
    by Haiyuan Yu, Philip M Kim, Emmett Sprecher, Valery Trifonov, Mark Gerstein
    posted to betweeness network ppi topology by hryk on 2008-05-13 08:55:50 as **** along with 4 people jfr zwang Takayuki carlk
  • Functional essentiality from topology features in metabolic networks: a case study in yeast.
    FEBS letters, Vol. 579, No. 21. (29 August 2005), pp. 4642-4646.
    by MC Palumbo, A Colosimo, A Giuliani, L Farina
    posted to essential metabolic network topology yeast by hryk on 2008-05-13 07:30:08 as ****
  • Multiple knockout analysis of genetic robustness in the yeast metabolic network
    Nature Genetics, Vol. 38, No. 9. (29 August 2006), pp. 993-998.
    by David Deutscher, Isaac Meilijson, Martin Kupiec, Eytan Ruppin
    posted to essential multiple-knockout yeast by hryk on 2008-05-13 07:25:43 as ** along with 7 people and 1 group tmmurali koller raiyar cjeans patrycja_missiuro edwardmorrissey jiny steinmetzlab
  • Essentiality is an emergent property of metabolic network wiring.
    FEBS letters, Vol. 581, No. 13. (29 May 2007), pp. 2485-2489.
    by MC Palumbo, A Colosimo, A Giuliani, L Farina
    posted to essential metabolic network by hryk on 2008-05-13 07:21:06 as **
  • Essential Bacillus subtilis genes.
    Proc Natl Acad Sci U S A, Vol. 100, No. 8. (15 April 2003), pp. 4678-4683.
    by K Kobayashi, SD Ehrlich, A Albertini, G Amati, KK Andersen, M Arnaud, K Asai, S Ashikaga, S Aymerich, P Bessieres, F Boland, SC Brignell, S Bron, K Bunai, J Chapuis, LC Christiansen, A Danchin, M Débarbouille, E Dervyn, E Deuerling, K Devine, SK Devine, O Dreesen, J Errington, S Fillinger, SJ Foster, Y Fujita, A Galizzi, R Gardan, C Eschevins, T Fukushima, K Haga, CR Harwood, M Hecker, D Hosoya, MF Hullo, H Kakeshita, D Karamata, Y Kasahara, F Kawamura, K Koga, P Koski, R Kuwana, D Imamura, M Ishimaru, S Ishikawa, I Ishio, D Le Coq, A Masson, C Mauël, R Meima, RP Mellado, A Moir, S Moriya, E Nagakawa, H Nanamiya, S Nakai, P Nygaard, M Ogura, T Ohanan, M O'Reilly, M O'Rourke, Z Pragai, HM Pooley, G Rapoport, JP Rawlins, LA Rivas, C Rivolta, A Sadaie, Y Sadaie, M Sarvas, T Sato, HH Saxild, E Scanlan, W Schumann, JF Seegers, J Sekiguchi, A Sekowska, SJ Séror, M Simon, P Stragier, R Studer, H Takamatsu, T Tanaka, M Takeuchi, HB Thomaides, V Vagner, JM van Dijl, K Watabe, A Wipat, H Yamamoto, M Yamamoto, Y Yamamoto, K Yamane, K Yata, K Yoshida, H Yoshikawa, U Zuber, N Ogasawara
    posted to bacillus essential gene by hryk on 2008-05-13 07:16:00 as ** along with 3 people and 2 groups ana Serkalem alanrw structural_bioinformatics Bioinformatics
  • Genome-scale Reconstruction of Metabolic Network in Bacillus subtilis Based on High-throughput Phenotyping and Gene Essentiality Data.
    J Biol Chem, Vol. 282, No. 39. (28 September 2007), pp. 28791-28799.
    by YK Oh, BO Palsson, SM Park, CH Schilling, R Mahadevan
    posted to bacillus metabolic network by hryk on 2008-05-12 17:43:33 as ** along with 1 person alexg
  • A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
    Mol Syst Biol, Vol. 3 (26 June 2007)
    by Adam M Feist, Christopher S Henry, Jennifer L Reed, Markus Krummenacker, Andrew R Joyce, Peter D Karp, Linda J Broadbelt, Vassily Hatzimanikatis, Bernhard O Palsson
    posted to ecoli metabolic network by hryk on 2008-05-12 17:41:21 as ** along with 4 people alexg cjeans michaelbarton JeremyZucker
  • notes Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae.
    Nat Biotechnol, Vol. 22, No. 1. (January 2004), pp. 86-92.
    by J Ihmels, R Levy, N Barkai
    posted to metabolic network saccharomyces transcript by hryk on 2008-05-12 15:06:28 as *** along with 7 people and 4 groups icases adepace nickluscombe koller arne shung siebert EisenLab EBI-regulation TNT dIEMoSIRIS
  • Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
    Mol Syst Biol, Vol. 2, No. 1. (21 February 2006), pp. msb4100050-E1-msb4100050-E11.
    by Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori
    posted to ecoli essential gene by hryk on 2008-05-11 07:18:59 as **** along with 2 people balajis wilsoros
  • Super and inner: together at last!
    (2004), pp. 116-129.
    by David S Goldberg, Robert B Findler, Matthew Flatt
    posted to informatics inheritance language programming by hryk on 2008-05-11 07:09:24 as ** along with 4 people and 1 group assnoodles samth dsilva water451 NU-PRL
  • The evolution of modularity in bacterial metabolic networks
    Proceedings of the National Academy of Sciences (6 May 2008), 0712149105.
    by Anat Kreimer, Elhanan Borenstein, Uri Gophna, Eytan Ruppin
    posted to evolution metabolic network by hryk on 2008-05-11 06:49:47 as ** along with 11 people qwermish deanmalmgren carlk jjray skato_toyaku mjoach tmmurali phoenixzxl roys pinney saket
  • Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast.
    Nature, Vol. 429, No. 6992. (10 June 2004), pp. 661-664.
    by B Papp, C Pál, LD Hurst
    posted to essential evolution network yeast by hryk on 2008-05-11 06:46:45 as *** along with 5 people tmmurali bjorns edwardmorrissey stefanoallesina Takayuki
  • Comparative analysis of essential genes and nonessential genes in Escherichia coli K12.
    Mol Genet Genomics, Vol. 279, No. 1. (January 2008), pp. 87-94.
    by X Gong, S Fan, A Bilderbeck, M Li, H Pang, S Tao
    posted to ecoli essential gene by hryk on 2008-05-02 12:43:15 as **
  • notes Hierarchical structure and the prediction of missing links in networks
    Nature, Vol. 453, No. 7191., pp. 98-101.
    by Aaron Clauset, Cristopher Moore, MEJ Newman
    posted to network prediction by hryk on 2008-05-02 03:14:08 as read along with 36 people pbull gtgt15 Ema jago cmor balicea kengg jjray soramame_0518 deanmalmgren briordan tny AbnerCYH cactus tmmurali akshat bryanhughes gagliol margaritis jyuh craigwilson06 cmmorel eyliu markusd elsantosneto pinney i-stevenson fbaroni nedwards apwesolowski Borelli ptrobajo dpf rds lfriedl sen_cheng
  • notes Evolvability and hierarchy in rewired bacterial gene networks
    Nature, Vol. 452, No. 7189. (17 April 2008), pp. 840-845.
    by Mark Isalan, Caroline Lemerle, Konstantinos Michalodimitrakis, Carsten Horn, Pedro Beltrao, Emanuele Raineri, Mireia Garriga-Canut, Luis Serrano
    posted to ecoli evolution network by hryk on 2008-04-28 11:49:40 as read along with 18 people and 4 groups aalibes tmmurali dullhunk neils cmzmasek AbnerCYH josedavid biehl caseybrown Garamonfok austin dbikard cactus margaritis chad_davis michaelbarton aheilbut zwang GEB Centre de Recherches Interdisciplinaires SynBioSys BergmanLab
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