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jfrs Yang [40 articles]

Nylige artikler sendt til jfrs bibliotek av forfatteren Yang. Du kan også see everyone s Yang.
  • Variations in DNA elucidate molecular networks that cause disease
    Nature (16 March 2008)
    by Yanqing Chen, Jun Zhu, Pek Y Lum, Xia Yang, Shirly Pinto, Douglas J Macneil, Chunsheng Zhang, John Lamb, Stephen Edwards, Solveig K Sieberts, Amy Leonardson, Lawrence W Castellini, Susanna Wang, Marie-France Champy, Bin Zhang, Valur Emilsson, Sudheer Doss, Anatole Ghazalpour, Steve Horvath, Thomas A Drake, Aldons J Lusis, Eric E Schadt
  • microRNAs exhibit high frequency genomic alterations in human cancer.
    Proc Natl Acad Sci U S A (5 June 2006)
    by Lin Zhang, Jia Huang, Nuo Yang, Joel Greshock, Molly S S Megraw, Antonis Giannakakis, Shun Liang, Tara L L Naylor, Andrea Barchetti, Michelle R R Ward, George Yao, Angelica Medina, Ann O'brien-Jenkins, Dionyssios Katsaros, Artemis Hatzigeorgiou, Phyllis A A Gimotty, Barbara L L Weber, George Coukos
  • MPDA: Microarray pooled DNA analyzer
    BMC Bioinformatics, Vol. 9 (15 April 2008), 196.
    by Hsin-Chou Yang, Mei-Chu Huang, Ling-Hui Li, Chien-Hsing Lin, Alice LT Yu, Mitchell B Diccianni, Jer-Yuan Wu, Yuan-Tsong Chen, Cathy SJ Fann
    posted to pooling by jfr on 2008-06-17 17:22:51 as ** along with 1 person jyuh
  • Microarray data mining using landmark gene-guided clustering
    BMC Bioinformatics, Vol. 9 (11 February 2008), 92.
    by Pankaj Chopra, Jaewoo Kang, Jiong Yang, Hyungjun Cho, Heenam S Kim, Min-Goo Lee
    posted to microarray_analysis clustering by jfr on 2008-06-17 16:55:08 as **** along with 1 person jyuh
  • Microarrays--planning your experiment.
    Methods in molecular medicine, Vol. 141 (2008), pp. 71-85.
    by JY Yang
    posted to microarray_technology experiment_design by jfr on 2008-06-13 16:23:19 as ** along with 1 person balicea
  • The methodology used to measure differential gene expression affects the outcome.
    Journal of biomolecular techniques : JBT, Vol. 18, No. 5. (December 2007), pp. 321-330.
    by Y Ding, L Xu, BD Jovanovic, IB Helenowski, DL Kelly, WJ Catalona, XJ Yang, M Pins, RC Bergan
    posted to platform_comparison by jfr on 2008-06-13 15:19:02 as ** along with 1 person jyuh
  • Interlaboratory evaluation of genomic signatures for predicting carcinogenicity in the rat.
    Toxicological sciences : an official journal of the Society of Toxicology, Vol. 103, No. 1. (May 2008), pp. 28-34.
    by MR Fielden, A Nie, M McMillian, CS Elangbam, BA Trela, Y Yang, RT Dunn, Y Dragan, R Fransson-Stehen, M Bogdanffy, SP Adams, WR Foster, SJ Chen, P Rossi, P Kasper, D Jacobson-Kram, KS Tatsuoka, PJ Wier, J Gollub, DN Halbert, A Roter, JK Young, JF Sina, J Marlowe, HJ Martus, J Aubrecht, AJ Olaharski, N Roome, P Nioi, I Pardo, R Snyder, R Perry, P Lord, W Mattes, BD Car, ,
  • Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
    Genome Res. (7 February 2008), gr.7080508.
    by David S Johnson, Wei Li, Benjamin D Gordon, Arindam Bhattacharjee, Bo Curry, Jayati Ghosh, Leonardo Brizuela, Jason S Carroll, Myles Brown, Paul Flicek, Christopher M Koch, Ian Dunham, Mark Bieda, Xiaoqin Xu, Peggy J Farnham, Philipp Kapranov, David A Nix, Thomas R Gingeras, Xinmin Zhang, Heather Holster, Nan Jiang, Roland Green, Jun S Song, Scott A Mccuine, Elizabeth Anton, Loan Nguyen, Nathan D Trinklein, Zhen Ye, Keith Ching, David Hawkins, Bing Ren, Peter C Scacheri, Joel Rozowsky, Alexander Karpikov, Ghia Euskirchen, Sherman Weissman, Mark Gerstein, Michael Snyder, Annie Yang, Zarmik Moqtaderi, Heather Hirsch, Hennady P Shulha, Yutao Fu, Zhiping Weng, Kevin Struhl, Richard M Myers, Jason D Lieb, Shirley X Liu
  • Gaining confidence in biological interpretation of the microarray data: the functional consistence of the significant GO categories.
    Bioinformatics (15 November 2007)
    by Da Yang, Yanhui Li, Hui Xiao, Qing Liu, Min Zhang, Jing Zhu, Wencai Ma, Chen Yao, Jing Wang, Dong Wang, Zheng Guo, Baofeng Yang
    posted to functional_analysis gene_ontology by jfr on 2008-04-07 12:58:32 as * along with 2 people jyuh ghattem
  • Complex Loci in human and mouse genomes.
    PLoS Genet, Vol. 2, No. 4. (April 2006)
    by PG Engström, H Suzuki, N Ninomiya, A Akalin, L Sessa, G Lavorgna, A Brozzi, L Luzi, SL Tan, L Yang, G Kunarso, EL Ng, S Batalov, C Wahlestedt, C Kai, J Kawai, P Carninci, Y Hayashizaki, C Wells, VB Bajic, V Orlando, JF Reid, B Lenhard, L Lipovich
    posted to jfrbib by jfr on 2008-03-30 21:06:21 as read along with 2 people balicea tabu
  • Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
    Nature, Vol. 420, No. 6915. (5 December 2002), pp. 563-573.
  • A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays.
    Bioinformatics (25 April 2007)
    by Yuanyuan Xiao, Mark R R Segal, Y H H Yang, Ru-Fang F Yeh
    posted to snp-arrays affy genotyping methodology by jfr on 2008-02-29 11:55:01 as *** along with 2 people jyuh shigepong
  • Molecular staging for survival prediction of colorectal cancer patients.
    J Clin Oncol, Vol. 23, No. 15. (20 May 2005), pp. 3526-3535.
  • Dynamic model based algorithms for screening and genotyping over 100 K SNPs on oligonucleotide microarrays.
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1958-1963.
    by X Di, H Matsuzaki, TA Webster, E Hubbell, G Liu, S Dong, D Bartell, J Huang, R Chiles, G Yang, MM Shen, D Kulp, GC Kennedy, R Mei, KW Jones, S Cawley
  • Relationship between genetic alterations and prognosis in sporadic colorectal cancer
    International Journal of Cancer, Vol. 118, No. 7. (2006), pp. 1721-1727.
    by Shih-Ching Chang, Jen-Kou Lin, Shung H Yang, Huann-Sheng Wang, Anna F Li, Chin-Wen Chi
    posted to colon_cancer mutations prognosis by jfr on 2008-02-08 14:12:17 as **** along with 1 person cpnP
  • GAzer: gene set analyzer.
    Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. 1697-1699.
    by SB Kim, S Yang, SK Kim, SC Kim, HG Woo, DJ Volsky, SY Kim, IS Chu
    posted to gene_set_analysis software by jfr on 2008-01-23 15:28:01 as * along with 1 person jyuh
  • Modular organization of protein interaction networks.
    Bioinformatics (8 November 2006)
    by Feng Luo, Yunfeng Yang, Chin-Fu F Chen, Roger Chang, Jizhong Zhou, Richard H H Scheuermann
  • Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome.
    Science (27 September 2007)
    by Jan O O Korbel, Alexander Eckehart E Urban, Jason P P Affourtit, Brian Godwin, Fabian Grubert, Jan Fredrik F Simons, Philip M M Kim, Dean Palejev, Nicholas J J Carriero, Lei Du, Bruce E E Taillon, Zhoutao Chen, Andrea Tanzer, A C Eugenia C Saunders, Jianxiang Chi, Fengtang Yang, Nigel P P Carter, Matthew E E Hurles, Sherman M M Weissman, Timothy T T Harkins, Mark B B Gerstein, Michael Egholm, Michael Snyder
  • Statistical significance for hierarchical clustering in genetic association and microarray expression studies.
    BMC Bioinformatics, Vol. 4, No. 1. (11 December 2003)
    by MA Levenstien, Y Yang, J Ott
    posted to clustering methodology by jfr on 2007-12-04 11:42:23 as ** along with 1 person textoris
  • The proliferation gene expression signature is a quantitative integrator of oncogenic events that predicts survival in mantle cell lymphoma.
    Cancer Cell, Vol. 3, No. 2. (February 2003), pp. 185-197.
    by A Rosenwald, G Wright, A Wiestner, WC Chan, JM Connors, E Campo, RD Gascoyne, TM Grogan, HK Muller-Hermelink, EB Smeland, M Chiorazzi, JM Giltnane, EM Hurt, H Zhao, L Averett, S Henrickson, L Yang, J Powell, WH Wilson, ES Jaffe, R Simon, RD Klausner, E Montserrat, F Bosch, TC Greiner, DD Weisenburger, WG Sanger, BJ Dave, JC Lynch, J Vose, JO Armitage, RI Fisher, TP Miller, M LeBlanc, G Ott, S Kvaloy, H Holte, J Delabie, LM Staudt
    posted to class_discovery proliferation by jfr on 2007-10-08 14:50:19 as **
  • Meta-analysis of several gene lists for distinct types of cancer: A simple way to reveal common prognostic markers
    BMC Bioinformatics, Vol. 8 (06 April 2007), 118.
    by Xinan Yang, Xiao Sun
  • Comprehensive annotation of bidirectional promoters identifies co-regulation among breast and ovarian cancer genes.
    PLoS Comput Biol, Vol. 3, No. 4. (20 April 2007)
    by MQ Yang, LM Koehly, LL Elnitski
    posted to antisense breast_cancer by jfr on 2007-07-02 17:04:23 as read
  • Global variation in copy number in the human genome
    Nature, Vol. 444, No. 7118. (23 November 2006), pp. 444-454.
    by Richard Redon, Shumpei Ishikawa, Karen R Fitch, Lars Feuk, George H Perry, Daniel T Andrews, Heike Fiegler, Michael H Shapero, Andrew R Carson, Wenwei Chen, Eun K Cho, Stephanie Dallaire, Jennifer L Freeman, Juan R Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R Macdonald, Christian R Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P Carter, Hiroyuki Aburatani, Charles Lee, Keith W Jones, Stephen W Scherer, Matthew E Hurles
  • The impact of sample imbalance on identifying differentially expressed genes.
    BMC Bioinformatics, Vol. 7 Suppl 4 (2006)
    by K Yang, J Li, H Gao
    posted to feature_selection methodology by jfr on 2007-05-11 14:49:10 as ** along with 1 person uz_labu_laimi
  • Locoregional relapse and distant metastasis in conservatively managed triple negative early-stage breast cancer.
    J Clin Oncol, Vol. 24, No. 36. (20 December 2006), pp. 5652-5657.
    by BG Haffty, Q Yang, M Reiss, T Kearney, SA Higgins, J Weidhaas, L Harris, W Hait, D Toppmeyer
    posted to breast_cancer local_recurrence by jfr on 2007-05-10 18:20:40 as **
  • Gene expression patterns and profile changes pre- and post-erlotinib treatment in patients with metastatic breast cancer.
    Clin Cancer Res, Vol. 11, No. 17. (1 September 2005), pp. 6226-6232.
    by SX Yang, RM Simon, AR Tan, D Nguyen, SM Swain
    posted to breast_cancer pre-post treatment by jfr on 2007-05-10 15:17:01 as ** along with 1 person Natowicz
  • Large scale data mining approach for gene-specific standardization of microarray gene expression data.
    Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2898-2904.
    by S Yoon, Y Yang, J Choi, J Seong
  • Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array
    BMC Genomics, Vol. 7 (27 December 2006), 325.
    by Paul J Gardina, Tyson A Clark, Brian Shimada, Michelle K Staples, Qing Yang, James Veitch, Anthony Schweitzer, Tarif Awad, Charles Sugnet, Suzanne Dee, Christopher Davies, Alan Williams, Yaron Turpaz
  • Prediction of survival in follicular lymphoma based on molecular features of tumor-infiltrating immune cells.
    N Engl J Med, Vol. 351, No. 21. (18 November 2004), pp. 2159-2169.
    by SS Dave, G Wright, B Tan, A Rosenwald, RD Gascoyne, WC Chan, RI Fisher, RM Braziel, LM Rimsza, TM Grogan, TP Miller, M LeBlanc, TC Greiner, DD Weisenburger, JC Lynch, J Vose, JO Armitage, EB Smeland, S Kvaloy, H Holte, J Delabie, JM Connors, PM Lansdorp, Q Ouyang, TA Lister, AJ Davies, AJ Norton, HK Muller-Hermelink, G Ott, E Campo, E Montserrat, WH Wilson, ES Jaffe, R Simon, L Yang, J Powell, H Zhao, N Goldschmidt, M Chiorazzi, LM Staudt
    posted to no-tag by jfr on 2007-01-12 15:33:54 as ** along with 2 people rdiaz eisei
  • CRSD: a comprehensive web server for composite regulatory signature discovery.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by CC Liu, CC Lin, WS Chen, HY Chen, PC Chang, JJ Chen, PC Yang
    posted to software by jfr on 2007-01-11 13:48:26 as *
  • Effects of replacing the unreliable cDNA microarray measurements on the disease classification based on gene expression profiles and functional modules.
    Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2883-2889.
    by D Wang, Y Lv, Z Guo, X Li, Y Li, J Zhu, D Yang, J Xu, C Wang, S Rao, B Yang
    posted to missing_values bioinformatics by jfr on 2007-01-09 18:08:07 as ** along with 1 person shigepong
  • Molecular diagnosis of Burkitt's lymphoma.
    N Engl J Med, Vol. 354, No. 23. (8 June 2006), pp. 2431-2442.
    by SS Dave, K Fu, GW Wright, LT Lam, P Kluin, EJ Boerma, TC Greiner, DD Weisenburger, A Rosenwald, G Ott, HK Müller-Hermelink, RD Gascoyne, J Delabie, LM Rimsza, RM Braziel, TM Grogan, E Campo, ES Jaffe, BJ Dave, W Sanger, M Bast, JM Vose, JO Armitage, JM Connors, EB Smeland, S Kvaloy, H Holte, RI Fisher, TP Miller, E Montserrat, WH Wilson, M Bahl, H Zhao, L Yang, J Powell, R Simon, WC Chan, LM Staudt,
    posted to no-tag by jfr on 2007-01-09 14:22:37 as ** along with 1 person tibbitts
  • Gene expression programs in response to hypoxia: cell type specificity and prognostic significance in human cancers.
    PLoS Med, Vol. 3, No. 3. (March 2006)
    by JT Chi, Z Wang, DS Nuyten, EH Rodriguez, ME Schaner, A Salim, Y Wang, GB Kristensen, A Helland, AL Børresen-Dale, A Giaccia, MT Longaker, T Hastie, GP Yang, MJ van de Vijver, PO Brown
    posted to breast_cancer ovarian_cancer by jfr on 2007-01-09 13:52:42 as **** along with 1 person tmmurali
  • A stable gene selection in microarray data analysis.
    BMC Bioinformatics, Vol. 7 (2006)
    by K Yang, Z Cai, J Li, G Lin
    posted to classification feature_selection by jfr on 2007-01-08 12:19:46 as **
  • Topology-based cancer classification and related pathway mining using microarray data.
    Nucleic Acids Res, Vol. 34, No. 14. (2006), pp. 4069-4080.
    by CC Liu, WS Chen, CC Lin, HC Liu, HY Chen, PC Yang, PC Chang, JJ Chen
    posted to bioinformatics classification pathway_analysis by jfr on 2006-11-08 10:03:24 as **
  • Evaluation of DNA microarray results with quantitative gene expression platforms
    Nature Biotechnology, Vol. 24, No. 9. (08 September 2006), pp. 1115-1122.
    by Roger D Canales, Yuling Luo, James C Willey, Bradley Austermiller, Catalin C Barbacioru, Cecilie Boysen, Kathryn Hunkapiller, Roderick V Jensen, Charles R Knight, Kathleen Y Lee, Yunqing Ma, Botoul Maqsodi, Adam Papallo, Elizabeth H Peters, Karen Poulter, Patricia L Ruppel, Raymond R Samaha, Leming Shi, Wen Yang, Lu Zhang, Federico M Goodsaid
  • A loss-of-function RNA interference screen for molecular targets in cancer
    Nature (29 March 2006)
    by Vu N Ngo, Eric R Davis, Laurence Lamy, Xin Yu, Hong Zhao, Georg Lenz, Lloyd T Lam, Sandeep Dave, Liming Yang, John Powell, Louis M Staudt
    posted to no-tag by jfr on 2006-11-06 15:28:44 as ** along with 3 people tabu lhonigberg mhucka
  • A high-throughput method to monitor the expression of microRNA precursors.
    Nucleic Acids Res, Vol. 32, No. 4. (2004)
    by TD Schmittgen, J Jiang, Q Liu, L Yang
    posted to mirna by jfr on 2006-11-06 15:27:17 as ** along with 2 people tardigrade mtagaya
  • Laser microdissection and microarray analysis of breast tumors reveal ER-α related genes and pathways
    Oncogene, Vol. aop, No. current.
    by F Yang, JA Foekens, J Yu, AM Sieuwerts, M Timmermans, JGM Klijn, D Atkins, Y Wang, Y Jiang
    posted to breast_cancer estrogen by jfr on 2006-11-03 17:41:54 as read
  • Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer.
    Lancet, Vol. 365, No. 9460. (5 2005), pp. 671-679.
    by Y Wang, JG Klijn, Y Zhang, AM Sieuwerts, MP Look, F Yang, D Talantov, M Timmermans, ME Meijer-van Gelder, J Yu, T Jatkoe, EM Berns, D Atkins, JA Foekens
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