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kollers p2p [41 articles]

Artikler nylig sendt til kollers bibliotek klassifisert med nøkkelordet p2p. You can also see everyone's p2p.
  • Co-evolution of transcriptional and post-translational cell-cycle regulation
    Nature (27 September 2006)
    by Lars J Jensen, Thomas S Jensen, Ulrik de Lichtenberg, Søren Brunak, Peer Bork
    posted to complex networks p2p regulatory signaling transcription by koller on 2006-10-07 00:24:38 as ***** along with 7 people and 1 group JAShapiro adepace olympos ccr cjeans kluck larsjuhljensen EisenLab
  • Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs.
    Genome Res, Vol. 14, No. 6. (June 2004), pp. 1107-1118.
    by H Yu, NM Luscombe, HX Lu, X Zhu, Y Xia, JD Han, N Bertin, S Chung, M Vidal, M Gerstein
    posted to cis-regulation evolution network p2p regulatory by koller on 2006-09-23 01:56:15 as ** along with 7 people and 1 group tharris bicko dragonrez chad_davis balajis cjeans cerca C. elegans / WormBase
  • Identification and analysis of evolutionarily cohesive functional modules in protein networks.
    Genome Res (31 January 2006)
    by Mónica Campillos, Christian von Mering, Lars Juhl J Jensen, Peer Bork
    posted to evolution modules network p2p by koller on 2006-09-19 01:14:42 as *** along with 7 people and 2 groups lfriedl balajis nirfriedman nickluscombe dbgoodman larsjuhljensen carlk kdl EBI-regulation
  • The yeast protein interaction network evolves rapidly and contains few redundant duplicate genes.
    Mol Biol Evol, Vol. 18, No. 7. (July 2001), pp. 1283-1292.
    by A Wagner
    posted to evolution network p2p by koller on 2006-09-11 06:51:49 as ** along with 4 people dragonrez shivaram gurkanbebek gcalda
  • Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction.
    Proc Natl Acad Sci U S A, Vol. 101, No. 16. (20 April 2004), pp. 5934-5939.
    by E Yeger-Lotem, S Sattath, N Kashtan, S Itzkovitz, R Milo, RY Pinter, U Alon, H Margalit
    posted to network network_motif p2p regulatory by koller on 2006-09-11 06:37:45 as ** along with 9 people and 4 groups camster snuppepuppan dbk korakot LeightonP hununu jtextori maralena carlk streptomyces Philosophy_of_Information dbk-lab Blog_and_Wiki_Research
  • Structure-based assembly of protein complexes in yeast.
    Science, Vol. 303, No. 5666. (26 March 2004), pp. 2026-2029.
    by P Aloy, B Böttcher, H Ceulemans, C Leutwein, C Mellwig, S Fischer, AC Gavin, P Bork, G Superti-Furga, L Serrano, RB Russell
    posted to complex p2p reconstruction by koller on 2006-09-11 06:03:32 as ** along with 4 people chad_davis ruvido Evangelia mingzhi
  • Protein interaction networks from yeast to human.
    Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 292-299.
    by P Bork, LJ Jensen, C von Mering, AK Ramani, I Lee, EM Marcotte
    posted to network p2p review by koller on 2006-09-11 05:59:16 as *** along with 7 people kuhn grahamc cjeans lpfernandes selrac Evangelia larsjuhljensen
  • STRING: known and predicted protein-protein associations, integrated and transferred across organisms.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by C von Mering, LJ Jensen, B Snel, SD Hooper, M Krupp, M Foglierini, N Jouffre, MA Huynen, P Bork
    posted to network p2p reconstruction resource by koller on 2006-09-11 05:48:41 as ** along with 7 people and 2 groups kuhn lfriedl nickluscombe iris_2001 Evangelia larsjuhljensen carlk kdl EBI-regulation
  • Design principles of molecular networks revealed by global comparisons and composite motifs
    Genome Biology, Vol. 7 (19 July 2006), R55.
    by Haiyuan Yu, Yu Xia, Valery Trifonov, Mark Gerstein
    posted to metabolic network network_motif p2p regulatory by koller on 2006-09-11 05:32:17 as *** along with 5 people and 2 groups indigoviolet jdiggans Takayuki beete vertikalist EisenLab BTS-PT-AS-CS
  • Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network.
    J Biol, Vol. 4, No. 2. (2005)
    by LV Zhang, OD King, SL Wong, DS Goldberg, AH Tong, G Lesage, B Andrews, H Bussey, C Boone, FP Roth
    posted to expression genetic-inter network network_motif p2p transcription by koller on 2006-08-31 06:58:25 as *** along with 10 people and 1 group lfriedl marcora jjray ssb benny nirfriedman iris_2001 gwcarter carlk ksiek kdl
  • Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes.
    PLoS Comput Biol, Vol. 2, No. 8. (4 August 2006)
    by C Haynes, CJ Oldfield, F Ji, N Klitgord, ME Cusick, P Radivojac, VN Uversky, M Vidal, LM Iakoucheva
    posted to network network_motif p2p sequence_motif by koller on 2006-08-31 02:48:06 as *** along with 3 people and 1 group agustinarce indigoviolet carlk EisenLab
  • Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis
    Nature, Vol. 436, No. 7052., pp. 861-865.
    by Kristin C Gunsalus, Hui Ge, Aaron J Schetter, Debra S Goldberg, Jing-Dong J Han, Tong Hao, Gabriel F Berriz, Nicolas Bertin, Jerry Huang, Ling-Shiang Chuang, Ning Li, Ramamurthy Mani, Anthony A Hyman, Birte Sönnichsen, Christophe J Echeverri, Frederick P Roth, Marc Vidal, Fabio Piano
    posted to expression reconstruction modules network p2p phenotype by koller on 2006-08-31 02:45:10 as *** along with 8 people and 1 group tharris nirfriedman patrycja_missiuro mingzhi jiny Doug carlk ksiek C. elegans / WormBase
  • Effect of sampling on topology predictions of protein-protein interaction networks
    Nature Biotechnology, Vol. 23, No. 7. (07 July 2005), pp. 839-844.
    by Jing-Dong J Han, Denis Dupuy, Nicolas Bertin, Michael E Cusick, Marc Vidal
    posted to network network_motif noise p2p by koller on 2006-08-31 02:22:00 as *** along with 11 people snuppepuppan kuhn rabbat gurkanbebek eukfn mikaelhuss grahamc cjeans iris_2001 paolomarcatili carlk
  • Evidence for dynamically organized modularity in the yeast protein-protein interaction network
    Nature, Vol. 430, No. 6995. (01 July 2004), pp. 88-93.
    by Jing-Dong J Han, Nicolas Bertin, Tong Hao, Debra S Goldberg, Gabriel F Berriz, Lan V Zhang, Denis Dupuy, Albertha JM Walhout, Michael E Cusick, Frederick P Roth, Marc Vidal
    posted to dynamic network network_motif p2p by koller on 2006-08-31 02:19:04 as **** along with 24 people and 2 groups davidecellai dragonrez lfriedl balajis yoh j3xucite kintoki mikaelhuss ruvido gcalda grahamc iris_2001 lpfernandes winterschlaefer Evangelia cdeane shung phoenixzxl stefanoallesina ellakat frohike shikin ksiek carlk kdl GeneGo
  • Protein interaction networks of Saccharomyces cerevisiae, Caenorhabditis elegans and Drosophila melanogaster: large-scale organization and robustness.
    Proteomics, Vol. 6, No. 2. (January 2006), pp. 456-461.
    by D Li, J Li, S Ouyang, J Wang, S Wu, P Wan, Y Zhu, X Xu, F He
    posted to network network_motif p2p by koller on 2006-08-29 17:57:22 as ** along with 3 people and 1 group tharris tny mmt C. elegans / WormBase
  • Pairwise alignment of protein interaction networks.
    J Comput Biol, Vol. 13, No. 2. (March 2006), pp. 182-199.
    by M Koyutürk, Y Kim, U Topkara, S Subramaniam, W Szpankowski, A Grama
    posted to evolution network p2p reconstruction by koller on 2006-08-29 17:50:38 as ** along with 2 people balajis carlk
  • PathBLAST: a tool for alignment of protein interaction networks.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by BP Kelley, B Yuan, F Lewitter, R Sharan, BR Stockwell, T Ideker
    posted to evolution network p2p reconstruction by koller on 2006-08-29 17:43:14 as *** along with 5 people sza dragonrez nuke2005 AbnerCYH carlk
  • Evolution and topology in the yeast protein interaction network.
    Genome Res, Vol. 14, No. 7. (July 2004), pp. 1310-1314.
    by S Wuchty
    posted to evolution network p2p by koller on 2006-08-29 17:30:46 as *** along with 2 people carlk friendpine
  • A quantitative protein interaction network for the ErbB receptors using protein microarrays
    Nature (06 November 2005)
    by Richard B Jones, Andrew Gordus, Jordan A Krall, Gavin Macbeath
    posted to biochemical network p2p by koller on 2006-08-26 00:24:04 as **** along with 6 people and 4 groups okarsligil jfr marcius tny julius pjasper Bioinformatics SysbioMPI-TCells BioinfoCIPF SGU-CIPF
  • Global analysis of protein localization in budding yeast.
    Nature, Vol. 425, No. 6959. (16 October 2003), pp. 686-691.
    by WK Huh, JV Falvo, LC Gerke, AS Carroll, RW Howson, JS Weissman, EK O'Shea
    posted to localization network p2p protein by koller on 2006-08-26 00:12:25 as ** along with 10 people and 2 groups tharris Cortel lfriedl opheliav rebeccahainess nirfriedman hplatero gurkanbebek raiyar iris_2001 C. elegans / WormBase kdl
  • Dynamic complex formation during the yeast cell cycle.
    Science, Vol. 307, No. 5710. (4 February 2005), pp. 724-727.
    by U de Lichtenberg, LJ Jensen, S Brunak, P Bork
    posted to dynamic network p2p by koller on 2006-08-26 00:03:21 as **** along with 11 people and 1 group mdimmic chad_davis balajis wnpx massivemayhem cjeans arne phoenixzxl larsjuhljensen carlk gjuggler dIEMoSIRIS
  • Keystone symposia: proteomics and bioinformatics and systems and biology.
    Expert Rev Proteomics, Vol. 2, No. 3. (June 2005), pp. 291-293.
    by AC Gavin
    posted to network p2p review by koller on 2006-08-25 23:58:41 as ***
  • Proteome survey reveals modularity of the yeast cell machinery
    Nature (22 January 2006)
    by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J Jensen, Sonja Bastuck, Birgit Dümpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M Rick, Bernhard Kuster, Peer Bork, Robert B Russell, Giulio Superti-Furga
    posted to network p2p reconstruction by koller on 2006-08-25 23:57:15 as **** along with 23 people and 10 groups Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis xico shantanu nirfriedman balabu dgront noano ruvido nicoleq lpfernandes phoenixzxl larsjuhljensen ellakat frohike carlk ethkim structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology
  • Systems-level analyses identify extensive coupling among gene expression machines
    Mol Syst Biol, Vol. 2, No. 1. (17 January 2006), pp. msb4100045-E1-msb4100045-E14.
    by Karolina Maciag, Steven J Altschuler, Michael D Slack, Nevan J Krogan, Andrew Emili, Jack F Greenblatt, Tom Maniatis, Lani F Wu
    posted to network network_motif p2p reconstruction by koller on 2006-08-25 21:58:20 as ** along with 2 people tmmurali tuck
  • Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
    Nature (22 March 2006)
    by Nevan J Krogan, Gerard Cagney, Haiyuan Yu, Gouqing Zhong, Xinghua Guo, Alexandr Ignatchenko, Joyce Li, Shuye Pu, Nira Datta, Aaron P Tikuisis, Thanuja Punna, Josã© M Peregrã­n-Alvarez, Michael Shales, Xin Zhang, Michael Davey, Mark D Robinson, Alberto Paccanaro, James E Bray, Anthony Sheung, Bryan Beattie, Dawn P Richards, Veronica Canadien, Atanas Lalev, Frank Mena, Peter Wong, Andrei Starostine, Myra M Canete, James Vlasblom, Samuel Wu, Chris Orsi, Sean R Collins, Shamanta Chandran, Robin Haw, Jennifer J Rilstone, Kiran Gandi, Natalie J Thompson, Gabe Musso, Peter St Onge, Shaun Ghanny, Mandy HY Lam, Gareth Butland, Amin M Altaf-Ul, Shigehiko Kanaya, Ali Shilatifard, Erin O'Shea, Jonathan S Weissman, James C Ingles, Timothy R Hughes, John Parkinson, Mark Gerstein, Shoshana J Wodak, Andrew Emili, Jack F Greenblatt
    posted to evolution network p2p reconstruction resource by koller on 2006-08-25 21:53:46 as ** along with 22 people and 4 groups jiny Borelli lfriedl chad_davis balajis marcius tardigrade nirfriedman balabu j3xucite nickluscombe raiyar cjeans nicoleq Evangelia csaveanu frohike carlk hplatero chasmand mapplab ethkim kdl EBI-regulation BioinfoCIPF SGU-CIPF
  • Local modeling of global interactome networks.
    Bioinformatics, Vol. 21, No. 17. (1 September 2005), pp. 3548-3557.
    by D Scholtens, M Vidal, R Gentleman
    posted to networks p2p reconstruction by koller on 2006-08-25 21:09:49 as ** along with 2 people and 1 group lfriedl iris_2001 kdl
  • Making sense of high-throughput protein-protein interaction data.
    Stat Appl Genet Mol Biol, Vol. 3, No. 1. (2004)
    by D Scholtens, R Gentleman
    posted to bayesian network p2p reconstruction by koller on 2006-08-25 21:05:14 as ****
  • Discovering regulatory and signalling circuits in molecular interaction networks.
    Bioinformatics, Vol. 18 Suppl 1 (2002)
    by T Ideker, O Ozier, B Schwikowski, AF Siegel
    posted to chip2 network p2p reconstruction regulatory signaling by koller on 2006-08-24 06:20:37 as ** along with 9 people and 2 groups cswinburne isimpson yaredo dragonrez okarsligil lfriedl noano frohike carlk kdl Bioinformatics
  • Global architecture of genetic interactions on the protein network.
    Nat Biotechnol, Vol. 21, No. 5. (May 2003), pp. 490-491.
    by O Ozier, N Amin, T Ideker
    posted to comparison genetic-inter network p2p by koller on 2006-08-24 06:17:58 as **
  • Physical network models.
    J Comput Biol, Vol. 11, No. 2-3. (2004), pp. 243-262.
    by CH Yeang, T Ideker, T Jaakkola
    posted to network p2p reconstruction regulatory by koller on 2006-08-24 06:13:41 as *** along with 3 people tmmurali wnpx noano
  • Integrating phenotypic and expression profiles to map arsenic-response networks.
    Genome Biol, Vol. 5, No. 12. (2004)
    by AC Haugen, R Kelley, JB Collins, CJ Tucker, C Deng, CA Afshari, JM Brown, T Ideker, B Van Houten
    posted to metabolic network p2p phenotype by koller on 2006-08-24 06:13:06 as *** along with 1 person snuppepuppan
  • From the Cover: Conserved patterns of protein interaction in multiple species.
    Proc Natl Acad Sci U S A, Vol. 102, No. 6. (8 February 2005), pp. 1974-1979.
    by R Sharan, S Suthram, RM Kelley, T Kuhn, S McCuine, P Uetz, T Sittler, RM Karp, T Ideker
    posted to evolution network p2p by koller on 2006-08-24 06:10:50 as **** along with 13 people and 2 groups tharris jiny sza dragonrez okarsligil balajis nuke2005 maryee gurkanbebek cjeans iris_2001 maralena mdstobbe C. elegans / WormBase Bioinformatics
  • Systematic interpretation of genetic interactions using protein networks
    Nature Biotechnology, Vol. 23, No. 5. (05 May 2005), pp. 561-566.
    by Ryan Kelley, Trey Ideker
    posted to metabolic network p2p genetic-inter by koller on 2006-08-24 06:08:23 as **** along with 13 people and 2 groups nedwards okarsligil tuck balajis wnpx nirfriedman nickluscombe mmt massivemayhem patrycjam patrycja_missiuro mingzhi carlk Bioinformatics EBI-regulation
  • Validation and refinement of gene-regulatory pathways on a network of physical interactions.
    Genome Biol, Vol. 6, No. 7. (2005)
    by CH Yeang, HC Mak, S McCuine, C Workman, T Jaakkola, T Ideker
    posted to bayesian chip2 p2p reconstruction regulatory transcription by koller on 2006-08-24 06:06:06 as ** along with 13 people and 1 group isimpson hplatero snuppepuppan abhik tmmurali textoris wnpx noano ccr cdppublications AlexanderPico carlk jago CDP
  • Systematic identification of functional orthologs based on protein network comparison
    Genome Res., Vol. 16, No. 3. (1 March 2006), pp. 428-435.
    by Sourav Bandyopadhyay, Roded Sharan, Trey Ideker
    posted to evolution network p2p by koller on 2006-08-24 06:02:00 as ** along with 3 people j3xucite iris_2001 carlk
  • Interactome networks: the state of the science.
    Genome Biol, Vol. 7, No. 1. (2006)
    by GJ Warner, YA Adeleye, T Ideker
    posted to network p2p resource review by koller on 2006-08-24 05:59:01 as ** along with 1 person wnpx
  • BioGRID: a general repository for interaction datasets.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by C Stark, BJ Breitkreutz, T Reguly, L Boucher, A Breitkreutz, M Tyers
    posted to network p2p resource by koller on 2006-08-24 05:51:03 as ** along with 10 people jyuh balajis nm lpfernandes Evangelia chasmand carlk dragonrez tmmurali dylanwalker
  • Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae
    Journal of Biology, Vol. 5, No. 4. (08 June 2006), 11.
    by Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, Bobby-Joe Breitkreutz, Gary C Hon, Chad L Myers, Ainslie Parsons, Helena Friesen, Rose Oughtred, Amy Tong, Chris Stark, Yuen Ho, David Botstein, Brenda Andrews, Charles Boone, Olga G Troyanskya, Trey Ideker, Kara Dolinski, Nizar N Batada, Mike Tyers
    posted to network p2p resource by koller on 2006-08-24 05:50:04 as *** along with 17 people and 3 groups snuppepuppan tmmurali lfriedl balajis wnpx nickluscombe egralla citecat noano grahamc iris_2001 sgoetz shikin s041629 pmendes mtruksa chasmand kdl EBI-regulation GeneGo
  • Estimating gene regulatory networks and protein-protein interactions of Saccharomyces cerevisiae from multiple genome-wide data.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
    by N Nariai, Y Tamada, S Imoto, S Miyano
    posted to bayesian network p2p regulatory by koller on 2006-08-24 05:34:10 as ** along with 2 people wnpx noano
  • Efficient algorithms for detecting signaling pathways in protein interaction networks.
    J Comput Biol, Vol. 13, No. 2. (March 2006), pp. 133-144.
    by J Scott, T Ideker, RM Karp, R Sharan
    posted to networks p2p reconstruction regulation signaling by koller on 2006-08-24 05:10:14 as ** along with 4 people wnpx gurkanbebek iris_2001 carlk
  • Towards an integrated protein-protein interaction network: a relational markov network approach.
    J Comput Biol, Vol. 13, No. 2. (March 2006), pp. 145-164.
    by A Jaimovich, G Elidan, H Margalit, N Friedman
    posted to bayesian networks p2p reconstruction by koller on 2006-08-24 05:08:07 as ***** along with 5 people and 1 group lfriedl wnpx nirfriedman rsantana iris_2001 kdl
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