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lptoliks library [59 articles]

Nye artikler sendt til lptoliks bibliotek.
  • The F-Box Protein MAX2 Functions as a Positive Regulator of Photomorphogenesis in Arabidopsis
    Plant Physiol., Vol. 145, No. 4. (1 December 2007), pp. 1471-1483.
    by Hui Shen, Phi Luong, Enamul Huq
    posted to phytochrome arabidopsis by lptolik on 2008-09-03 05:41:38 as **
  • NDPK2 as a Signal Transducer in the Phytochrome-mediated Light Signaling
    J. Biol. Chem., Vol. 280, No. 7. (18 February 2005), pp. 5740-5749.
    by Yu Shen, Jeong-Il Kim, Pill-Soon Song
    posted to phytochrome arabidopsis by lptolik on 2008-09-03 05:40:12 as ****
  • A new role for phytochromes in temperature-dependent germination
    New Phytologist, Vol. 174, No. 4. (June 2007), pp. 735-741.
    by Heschel, M Shane, Selby, Jessica, Butler, Colleen, Whitelam, C Garry, Sharrock, A Robert, Donohue, Kathleen
    posted to phytochrome cold_responce arabidopsis by lptolik on 2008-09-03 05:33:23 as *****
  • Heterodimerization of type II phytochromes in Arabidopsis
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 31. (2004), pp. 11500-11505.
    by Robert A Sharrock, Ted Clack
    posted to phytochrome arabidopsis by lptolik on 2008-09-03 05:13:51 as *****
  • The phytochrome red/far-red photoreceptor superfamily
    Genome Biology, Vol. 9 (28 August 2008), 230.
    by Robert A Sharrock
    posted to phytochrome by lptolik on 2008-09-03 05:11:00 as *****
  • Exact model reduction of combinatorial reaction networks
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Holger Conzelmann, Dirk Fey, Ernst Gilles
    posted to optimization_technique model_checking kinetic_modelling by lptolik on 2008-09-03 05:08:11 as **** along with 1 person ullahmukhtar
  • Methodology capture: discriminating between the "best" and the rest of community practice
    BMC Bioinformatics, Vol. 9 (01 September 2008), 359.
    by James M Eales, John W Pinney, Robert D Stevens, David L Robertson
    posted to knowledge_capture by lptolik on 2008-09-03 05:05:15 as ***** along with 2 people reyez chad_davis
  • FERN - a Java framework for stochastic simulation and evaluation of reaction networks
    BMC Bioinformatics, Vol. 9 (29 August 2008), 356.
    by Florian Erhard, Caroline C Friedel, Ralf Zimmer
    posted to stochastic_simulation sbsi modelling by lptolik on 2008-09-03 05:03:31 as ** along with 2 people reyez grahamc
  • Phytochrome Interacting Factors: central players in phytochrome-mediated light signaling networks.
    Trends in plant science, Vol. 12, No. 11. (November 2007), pp. 514-521.
    by A Castillon, H Shen, E Huq
    posted to phytochrome by lptolik on 2008-08-28 16:13:16 as *****
  • A novel molecular recognition motif necessary for targeting photoactivated phytochrome signaling to specific basic helix-loop-helix transcription factors.
    The Plant cell, Vol. 16, No. 11. (November 2004), pp. 3033-3044.
    by R Khanna, E Huq, EA Kikis, B Al-Sady, C Lanzatella, PH Quail
    posted to no-tag by lptolik on 2008-08-28 16:12:18 as *****
  • Light-Induced Phosphorylation and Degradation of the Negative Regulator PHYTOCHROME-INTERACTING FACTOR1 from Arabidopsis Depend upon Its Direct Physical Interactions with Photoactivated Phytochromes
    Plant Cell, Vol. 20, No. 6. (1 June 2008), pp. 1586-1602.
    by Hui Shen, Ling Zhu, Alicia Castillon, Manoj Majee, Bruce Downie, Enamul Huq
    posted to arabidopsis phytochrome by lptolik on 2008-08-28 16:09:20 as ***** along with 1 person jmjimenez
  • Light signaling: back to space
    Trends in Plant Science, Vol. 13, No. 3. (March 2008), pp. 108-114.
    by Jordi Bou-Torrent, Irma Roig-Villanova, Jaime F Martínez-García
    posted to arabidopsis light_sensing by lptolik on 2008-08-28 16:03:09 as *****
  • Light-regulated transcriptional networks in higher plants
    Nature Reviews Genetics, Vol. 8, No. 3., pp. 217-230.
    by Yuling Jiao, On S Lau, Xing W Deng
    posted to arabidopsis light_sensing networks by lptolik on 2008-08-28 15:58:17 as ***** along with 1 person echinotrix
  • Photostasis and cold acclimation: sensing low temperature through photosynthesis
    Physiologia Plantarum, Vol. 126, No. 1. (January 2006), pp. 28-44.
    by Ingo Ensminger, Florian Busch, Norman P Huner
    posted to arabidopsis cold_responce light_sensing by lptolik on 2008-08-27 14:57:54 as ****
  • A new strategy for assessing sensitivities in biochemical models
    Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences
    by Sven Sahle, Pedro Mendes, Stefan Hoops, Ursula Kummer
    posted to kinetic_modelling model_checking sbsi by lptolik on 2008-08-26 10:41:34 as *****
  • Scatter search for chemical and bio-process optimization
    Journal of Global Optimization, Vol. 37, No. 3. (March 2007), pp. 481-503.
    by Egea, Jose, Rodriguez-Fernandez, Maria, Banga, Julio, Marti, Rafael
    posted to modelling optimization_technique sbsi by lptolik on 2008-08-25 11:29:27 as ****
  • Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development
    Genome Biology, Vol. 9 (18 August 2008), R130.
    by Michael F Covington, Julin N Maloof, Marty Straume, Steve A Kay, Stacey L Harmer
    posted to arabidopsis circadian_clock by lptolik on 2008-08-20 08:40:21 as ** along with 1 person reyez
  • Utility of a single adjusting compartment: a novel methodology for whole body physiologically-based pharmacokinetic modelling
    Theoretical Biology and Medical Modelling, Vol. 5 (08 August 2008), 19.
    by Hirotaka Ando, Shigeru Izawa, Wataru Hori, Ippei Nakagawa
    posted to biocad kinetic_modelling metabolome pharmacokinetic by lptolik on 2008-08-17 15:13:38 as **
  • On the origin of distribution patterns of motifs in biological networks.
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Arun Konagurthu, Arthur Lesk
    posted to graph_analysis networks by lptolik on 2008-08-17 15:04:02 as *** along with 2 people AbnerCYH barriot
  • A review of imaging techniques for systems biology
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Armen Kherlopian, Ting Song, Qi Duan, Mathew Neimark, Ming Po, John Gohagan, Andrew Laine
    posted to phys_props by lptolik on 2008-08-17 15:01:23 as **
  • Whole proteome identification of plant candidate G-protein coupled receptors in Arabidopsis, Rice, and Poplar: computational prediction and in vivo protein coupling
    Genome Biology, Vol. 9 (31 July 2008), R120.
    by Timothy E Gookin, Junhyong Kim, Sarah M Assmann
    posted to arabidopsis by lptolik on 2008-08-06 16:47:34 as **
  • Can single knockouts accurately single out gene functions?
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by David Deutscher, Isaac Meilijson, Stefan Schuster, Eytan Ruppin
    posted to modelling by lptolik on 2008-08-02 21:19:36 as ** along with 2 people seemu jiny
  • Uncovering mechanisms of transcriptional regulations by systematic mining of cis regulatory elements with gene expression profiles
    BioData Mining, Vol. 1, No. 4. (17 July 2008)
    by Qicheng Ma, Gung-Wei Chirn, Joseph D Szustakowski, Adel Bakhtiarova, Penelope A Kosinski, Daniel Kemp, Nanguneri Nirmala
    posted to eucariotic_transcription_regulation by lptolik on 2008-08-02 21:17:17 as ****
  • Computational identification of ubiquitylation sites from protein sequences
    BMC Bioinformatics, Vol. 9 (15 July 2008), 310.
    by Chun-Wei Tung, Shinn-Ying Ho
    posted to phys_props by lptolik on 2008-08-02 12:48:58 as ***** along with 1 person jyuh
  • HY5, Circadian Clock-Associated 1, and a cis-Element, DET1 Dark Response Element, Mediate DET1 Regulation of Chlorophyll a/b-Binding Protein 2 Expression
    Plant Physiol., Vol. 133, No. 4. (1 December 2003), pp. 1565-1577.
    by Bridey B Maxwell, Carol R Andersson, Daniel S Poole, Steve A Kay, Joanne Chory
    posted to arabidopsis cab2 by lptolik on 2008-08-01 15:48:33 as ****
  • The APRR1/TOC1 Quintet Implicated in Circadian Rhythms of Arabidopsis thaliana: I. Characterization with APRR1-Overexpressing Plants
    Plant Cell Physiol., Vol. 43, No. 1. (1 January 2002), pp. 58-69.
    by Seiya Makino, Akinori Matsushika, Masaya Kojima, Takafumi Yamashino, Takeshi Mizuno
    posted to arabidopsis cab2 ccr2 lhy toc1 by lptolik on 2008-08-01 15:37:04 as ****
  • Using directed information to build biologically relevant influence networks.
    Computational systems bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference, Vol. 6 (2007), pp. 145-156.
    by A Rao, AO Hero, DJ States, JD Engel
    posted to biocad by lptolik on 2008-08-01 15:13:38 as **** along with 1 person jyuh
  • Association Mapping of Complex Diseases with Ancestral Recombination Graphs: Models and Efficient Algorithms
    Journal of Computational Biology, Vol. 0, No. 0. (0), pp. 1-18.
    by Yufeng Wu
    posted to modelling by lptolik on 2008-07-31 12:50:27 as **** along with 1 person jyuh
  • Modeling cellular deformations using the level set formalism
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Liu Yang, Janet Effler, Brett Kutscher, Sarah Sullivan, Douglas Robinson, Pablo Iglesias
    posted to modelling phys_props by lptolik on 2008-07-27 13:52:27 as **
  • Function2Gene: a gene selection tool to increase the power of genetic association studies by utilizing public databases and expert knowledge
    BMC Bioinformatics, Vol. 9 (17 July 2008), 311.
    by Don L Armstrong, Chaim O Jacob, Raphael Zidovetzki
    posted to biocad by lptolik on 2008-07-23 11:29:05 as ** along with 1 person jyuh
  • Finding motifs using random projections
    (2001), pp. 69-76.
    by Jeremy Buhler, Martin Tompa
    posted to anom_behaviour_finding data_representation modelling by lptolik on 2008-07-22 18:08:19 as read along with 2 people nedwards RamuAnandakrishnan
  • Probabilistic discovery of time series motifs
    (2003)
    by B Chiu, E Keogh, S Lonardi
    posted to anom_behaviour_finding data_representation by lptolik on 2008-07-22 01:01:03 as read
  • Finding Motifs in Time Series
    (July 2002)
    by Jessica Lin, Eamonn Keogh, Stefano Lonardi, Pranav Patel
    posted to anom_behaviour_finding data_representation by lptolik on 2008-07-22 00:54:21 as read
  • Finding surprising patterns in a time series database in linear time and space
    (2002), pp. 550-556.
    by Eamonn Keogh, Stefano Lonardi, Bill ' Chiu
    posted to anom_behaviour_finding by lptolik on 2008-07-22 00:53:15 as read
  • Numerical Time-Series Pattern Extraction Based on Irregular Piecewise Aggregate Approximation and Gradient Specification
    New Generation Computing, Vol. 25, No. 3. (4 May 2007), pp. 213-222.
    by Miho Ohsaki, Hidenao Abe, Takahira Yamaguchi
    posted to data_representation by lptolik on 2008-07-21 23:57:57 as **
  • Exact indexing of dynamic time warping
    Knowledge and Information Systems, Vol. 7, No. 3. (March 2005), pp. 358-386.
    by Eamonn Keogh, Chotirat A Ratanamahatana
    posted to data_representation by lptolik on 2008-07-21 23:57:17 as ***** along with 3 people sdvillal lemire burtonwu
  • Dimensionality Reduction for Fast Similarity Search in Large Time Series Databases
    Knowledge and Information Systems, Vol. 3, No. 3. (2001), pp. 263-286.
    by Eamonn Keogh, Kaushik Chakrabarti, Michael Pazzani, Sharad Mehrotra
    posted to data_representation by lptolik on 2008-07-21 23:56:29 as read along with 1 person burtonwu
  • New Time Series Data Representation ESAX for Financial Applications
    icdew, Vol. 0 (2006)
    by Battuguldur Lkhagva, Yu Suzuki, Kyoji Kawagoe
    posted to data_representation by lptolik on 2008-07-21 23:53:29 as read
  • Locally adaptive dimensionality reduction for indexing large time series databases
    SIGMOD Rec., Vol. 30, No. 2. (June 2001), pp. 151-162.
    by Eamonn Keogh, Kaushik Chakrabarti, Michael Pazzani, Sharad Mehrotra
    posted to data_representation modelling by lptolik on 2008-07-21 23:49:46 as read
  • Unraveling Protein Networks with Power Graph Analysis
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000108.
    by Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder
    posted to data_representation modelling by lptolik on 2008-07-21 15:39:37 as ** along with 18 people and 2 groups aramesh2 AbnerCYH jmuhlich MatthiasReimann royerloic Ema kengg roys reyez tmmurali nuin Borelli askrajiv renatomilani chad_davis stajich sebk rsantana Berkeley Mycology OPIG
  • Auto-regulation of the circadian slave oscillator component AtGRP7 and regulation of its targets is impaired by a single RNA recognition motif point mutation
    The Plant Journal, Vol. 52, No. 6. (December 2007), pp. 1119-1130.
    by Schoning, C Jan, Streitner, Corinna, Page, R Damian, Hennig, Sven, Uchida, Kenko, Wolf, Eva, Furuya, Masaki, Staiger, Dorothee
    posted to arabidopsis circadian_clock by lptolik on 2008-07-21 13:20:00 as **
  • The negative regulator of plant cold responses, HOS1, is a RING E3 ligase that mediates the ubiquitination and degradation of ICE1.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 21. (23 May 2006), pp. 8281-8286.
    by CH Dong, M Agarwal, Y Zhang, Q Xie, JK Zhu
    posted to no-tag by lptolik on 2008-07-21 13:18:56 as **
  • An integrated genetic, genomic and systems approach defines gene networks regulated by the interaction of light and carbon signaling pathways in Arabidopsis.
    BMC systems biology, Vol. 2 (2008)
    by KE Thum, MJ Shin, RA Gutiérrez, I Mukherjee, MS Katari, D Nero, D Shasha, GM Coruzzi
    posted to arabidopsis phytochrome by lptolik on 2008-07-20 21:57:34 as ***** along with 2 people Borelli kengg
  • Sucrose control of phytochrome A signaling in Arabidopsis.
    The Plant cell, Vol. 9, No. 4. (April 1997), pp. 583-595.
    by PP Dijkwel, C Huijser, PJ Weisbeek, NH Chua, SC Smeekens
    posted to arabidopsis phytochrome by lptolik on 2008-07-20 21:48:14 as ****
  • Experiencing SAX: a novel symbolic representation of time series
    Data Mining and Knowledge Discovery, Vol. 15, No. 2. (18 October 2007), pp. 107-144.
    by Jessica Lin, Eamonn Keogh, Li Wei, Stefano Lonardi
    posted to data_representation by lptolik on 2008-07-20 19:50:31 as read along with 2 people lenov burtonwu
  • A Graphical Notation to describe the Logical Interactions of Biological Pathways
    Journal of Integrative Bioinformatics, Vol. 3, No. 2. (2006)
    by Stuart L Moodie, Anatoly Sorokin, Igor Groyanin, Peter Ghazal
    posted to no-tag by lptolik on 2008-07-20 16:01:58 as read
  • A stitch in time: Efficient computation of genomic DNA melting bubbles
    Algorithms for Molecular Biology, Vol. 3, No. 1. (2008)
    by Eivind Tostesen
    posted to dna modelling phys_props by lptolik on 2008-07-18 10:06:16 as ****
  • Altered oscillator function affects clock resonance and is responsible for the reduced day-length sensitivity of CKB4 overexpressing plants
    The Plant Journal, Vol. 51, No. 6. (September 2007), pp. 966-977.
    by Portoles, Sergi, Mas, Paloma
    posted to arabidopsis clock by lptolik on 2008-07-17 10:53:59 as ***
  • Kinetic proofreading of gene activation by chromatin remodeling
    HFSP Journal, Vol. 2, No. 3. (2008), pp. 167-170.
    by R Blossey, H Schiessel
    posted to kinetic_modelling eucariotictranscriptioregulation by lptolik on 2008-07-15 12:45:09 as ***
  • Light signals, phytochromes and cross-talk with other environmental cues.
    J Exp Bot, Vol. 55, No. 395. (January 2004), pp. 271-276.
    by KA Franklin, GC Whitelam
    posted to arabidopsis phytochrome by lptolik on 2008-06-24 18:09:31 as ** along with 1 person Happybene
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