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nedwards' proteomics [230 articles]

Artikler nylig sendt til nedwards' bibliotek klassifisert med nøkkelordet proteomics. You can also see everyone's proteomics.
  • Increasing information from shotgun proteomic data by accounting for misassigned precursor ion masses
    PROTEOMICS, Vol. 8, No. 14. (2008), pp. 2791-2797.
    by Alexander Scherl, Yihsuan S Tsai, Scott A Shaffer, David R Goodlett
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-08-28 22:10:25 as ** along with 1 person brianb
  • Evaluation of confidence and reproducibility in quantitative proteomics performed by a capillary isoelectric focusing-based proteomic platform coupled with a spectral counting approach
    ELECTROPHORESIS, Vol. 29, No. 14. (2008), pp. 3047-3054.
    by Brian M Balgley, Weijie Wang, Tao Song, Xueping Fang, Li Yang, Cheng S Lee
    posted to protein-quantitation proteomics spectral-counting tandem-mass-spectrometry by nedwards on 2008-08-28 22:08:40 as **
  • Exploring the Precursor Ion Exclusion Feature of Liquid Chromatography−Electrospray Ionization Quadrupole Time-of-Flight Mass Spectrometry for Improving Protein Identification in Shotgun Proteome Analysis
    Anal. Chem., Vol. 80, No. 12. (15 June 2008), pp. 4696-4710.
    by Nan Wang, Liang Li
    posted to dynamic-exclusion proteomics tandem-mass-spectrometry by nedwards on 2008-07-03 21:08:53 as **
  • Recognition of the Carboxy-Terminal Peptide in Cyanogen Bromide Digests of Proteins
    Anal. Chem., Vol. 67, No. 9. (1995), pp. 1644-1645.
    by Constance M Murphy, Catherine Fenselau
    posted to c-terminal-peptides proteomics tandem-mass-spectrometry by nedwards on 2008-07-03 20:57:51 as **
  • A new method for C-terminal sequence analysis in the proteomic era
    Nature Methods, Vol. 2, No. 3. (17 February 2005), pp. 193-200.
    by Bart Samyn, Kjell Sergeant, Pedro Castanheira, Carlos Faro, Jozef V Van Beeumen
    posted to c-terminal-peptides proteomics by nedwards on 2008-07-03 20:51:30 as ** along with 1 person taenneken
  • Proteome-derived, database-searchable peptide libraries for identifying protease cleavage sites
    Nature Biotechnology, Vol. 26, No. 6. (25 May 2008), pp. 685-694.
    by Oliver Schilling, Christopher M Overall
    posted to n-terminal-peptides proteomics tandem-mass-spectrometry by nedwards on 2008-07-03 20:48:14 as ** along with 1 person brianb
  • Proteases' prime targets revealed
    Nature Biotechnology, Vol. 26, No. 6., pp. 652-653.
    by Scott L Diamond, Doron Greenbaum
    posted to n-terminal-peptides proteomics tandem-mass-spectrometry by nedwards on 2008-07-03 20:47:24 as **
  • notes Reliable automatic protein identification from matrix-assisted laser desorption/ionization mass spectrometric peptide fingerprints
    Electrophoresis, Vol. 20, No. 18. (1999), pp. 3521-3526.
    by Peter Berndt, Uwe Hobohm, Hanno Langen
    posted to isotope-cluster-modeling mass-spectrometry peak-detection proteomics by nedwards on 2008-06-16 15:21:23 as **
  • Automated interpretation of mass spectra of complex mixtures by matching of isotope peak distributions
    Rapid Communications in Mass Spectrometry, Vol. 18, No. 20. (2004), pp. 2465-2472.
    by Jorge Fernández-De-Cossio, Luis J Gonzalez, Yoshinori Satomi, Lazaro Betancourt, Yassel Ramos, Vivian Huerta, Vladimir Besada, Gabriel Padron, Naoto Minamino, Toshifumi Takao
    posted to isotope-cluster-modeling isotope-label mass-spectrometry peak-detection proteomics by nedwards on 2008-06-16 14:56:12 as **
  • An automated method for the analysis of stable isotope labeling data in proteomics.
    Journal of the American Society for Mass Spectrometry, Vol. 16, No. 7. (July 2005), pp. 1181-1191.
    by X Zhang, W Hines, J Adamec, JM Asara, S Naylor, FE Regnier
    posted to isotope-cluster-modeling isotope-label mass-spectrometry peak-detection proteomics by nedwards on 2008-06-16 14:54:17 as **
  • Mass spectrometry-based proteomics turns quantitative.
    Nat Chem Biol, Vol. 1, No. 5. (October 2005), pp. 252-262.
    by SE Ong, M Mann
    posted to isotope-label mass-spectrometry protein-quantitation proteomics by nedwards on 2008-06-16 14:46:05 as ** along with 1 person balabu
  • notes Proteolytic 18O Labeling for Comparative Proteomics: Evaluation of Endoprotease Glu-C as the Catalytic Agent
    J. Proteome Res., Vol. 1, No. 1. (21 February 2002), pp. 27-33.
    by KJ Reynolds, X Yao, C Fenselau
    posted to isotope-cluster-modeling isotope-label mass-spectrometry proteomics by nedwards on 2008-06-16 14:37:49 as **
  • Isotopic Distributions in Mass Spectra of Large Molecules
    Anal. Chem., Vol. 55, No. 2. (1983), pp. 353-356.
    by James Yergey, David Heller, Gordon Hansen, Robert J Cotter, Catherine Fenselau
    posted to isotope-cluster-modeling mass-spectrometry peak-detection proteomics by nedwards on 2008-06-16 14:24:31 as **
  • Automated deconvolution and deisotoping of electrospray mass spectra
    Journal of Mass Spectrometry, Vol. 37, No. 2. (2002), pp. 223-229.
    by Marco Wehofsky, Ralf Hoffmann
    posted to isotope-cluster-modeling mass-spectrometry peak-detection proteomics by nedwards on 2008-06-16 14:16:54 as **
  • notes Improving protein identification from peptide mass fingerprinting through a parameterized multi-level scoring algorithm and an optimized peak detection
    Electrophoresis, Vol. 20, No. 18. (1999), pp. 3535-3550.
    by Robin Gras, Markus Müller, Elisabeth Gasteiger, Steven Gay, Pierre-Alain Binz, William Bienvenut, Christine Hoogland, Jean-Charles Sanchez, Amos Bairoch, Denis F Hochstrasser, Ron D Appel
    posted to isotope-cluster-modeling mass-spectrometry peak-detection proteomics by nedwards on 2008-06-16 14:16:07 as **
  • Absolute Quantification of Proteins by LCMSE: A Virtue of Parallel ms Acquisition
    Mol Cell Proteomics, Vol. 5, No. 1. (1 January 2006), pp. 144-156.
    by Jeffrey C Silva, Marc V Gorenstein, Guo-Zhong Li, Johannes P Vissers, Scott J Geromanos
    posted to mass-spectrometry protein-quantitation proteomics by nedwards on 2008-06-09 15:13:13 as ** along with 1 person olberd
  • Exponentially Modified Protein Abundance Index (emPAI) for Estimation of Absolute Protein Amount in Proteomics by the Number of Sequenced Peptides per Protein
    Mol Cell Proteomics, Vol. 4, No. 9. (1 September 2005), pp. 1265-1272.
    by Yasushi Ishihama, Yoshiya Oda, Tsuyoshi Tabata, Toshitaka Sato, Takeshi Nagasu, Juri Rappsilber, Matthias Mann
    posted to protein-quantitation protein-quantitation-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-06-09 15:04:19 as ** along with 1 person nuin
  • Proteomic strategies for rapid characterization of micro-organisms
    European Journal of Mass Spectrometry, Vol. 13, No. 1. (2007), pp. 35-39.
    by C Fenselau, S Russell, S Swatkoski, N Edwards
    posted to bacillus mass-spectrometry microorganism-identification proteomics by nedwards on 2008-05-05 16:04:15 as **
  • Isoform Analysis of LC−MS/MS Data from Multidimensional Fractionation of the Serum Proteome
    J. Proteome Res. (18 April 2008)
    by Alexei L Krasnoselsky, Vitor M Faca, Sharon J Pitteri, Qing Zhang, Samir M Hanash
    posted to protein-isoforms proteomics tandem-mass-spectrometry by nedwards on 2008-04-25 15:58:47 as **
  • Linear Discriminant Analysis-Based Estimation of the False Discovery Rate for Phosphopeptide Identifications
    J. Proteome Res. (19 April 2008)
    by Xiuxia Du, Feng Yang, Nathan P Manes, David L Stenoien, Matthew E Monroe, Joshua N Adkins, David J States, Samuel O Purvine, Ii Camp, Richard D Smith
    posted to peptide-identification-statistics phosphopeptide phosphorylation proteomics tandem-mass-spectrometry by nedwards on 2008-04-25 15:56:45 as ** along with 2 people neils brianb
  • RAId DbS: Peptide Identification using Database Searches with Realistic Statistics
    Biology Direct, Vol. 2 (25 October 2007), 25.
    by Gelio Alves, Aleksey Y Ogurtsov, Yi-Kuo Yu
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-04-02 19:39:57 as **
  • Calibrating E-values for MS2 database search methods
    Biology Direct, Vol. 2 (05 November 2007), 26.
    by Gelio Alves, Aleksey Y Ogurtsov, Wells W Wu, Guanghui Wang, Rong-Fong Shen, Yi-Kuo Yu
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-04-02 19:37:35 as ** along with 1 person brianb
  • Online Microwave D-Cleavage LC-ESI-MS/MS of Intact Proteins: Site-Specific Cleavages at Aspartic Acid Residues and Disulfide Bonds
    J. Proteome Res., Vol. 7, No. 3. (7 March 2008), pp. 1012-1026.
    by Nicolas J Hauser, Franco Basile
    posted to acid-cleavage proteomics tandem-mass-spectrometry by nedwards on 2008-03-24 18:44:55 as **
  • An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data.
    J Proteome Res, Vol. 7, No. 1. (January 2008), pp. 51-61.
    by LN Mueller, MY Brusniak, DR Mani, R Aebersold
    posted to mass-spectrometry protein-quantitation proteomics by nedwards on 2008-03-24 16:38:32 as ** along with 4 people jyuh raiyar olberd nuin
  • Identification of beta-Lactamase in Antibiotic-Resistant Bacillus cereus Spores
    Appl. Environ. Microbiol., Vol. 74, No. 3. (1 February 2008), pp. 904-906.
    by Catherine Fenselau, Crystal Havey, Nuttinee Teerakulkittipong, Stephen Swatkoski, Olli Laine, Nathan Edwards
    posted to antibiotic-resistance bacillus proteomics by nedwards on 2008-02-01 20:05:29 as **
  • Semisupervised model-based validation of Peptide identifications in mass spectrometry-based proteomics.
    J Proteome Res, Vol. 7, No. 1. (January 2008), pp. 254-265.
    by H Choi, AI Nesvizhskii
    posted to machine-learning peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-02-01 18:47:35 as ** along with 1 person jyuh
  • Improving Sensitivity by Probabilistically Combining Results from Multiple MS/MS Search Methodologies
    J. Proteome Res., Vol. 7, No. 1. (4 January 2008), pp. 245-253.
    by Brian C Searle, Mark Turner, Alexey I Nesvizhskii
    posted to machine-learning peptide-identification peptide-identification-combiners proteomics tandem-mass-spectrometry by nedwards on 2008-02-01 18:43:14 as **
  • Semi-supervised learning for peptide identification from shotgun proteomics datasets
    Nature Methods, Vol. 4, No. 11. (21 October 2007), pp. 923-925.
    by Lukas Käll, Jesse D Canterbury, Jason Weston, William S Noble, Michael J Maccoss
    posted to machine-learning peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-01-31 20:55:27 as ** along with 1 person tmmurali
  • De Novo Peptide Identification via Tandem Mass Spectrometry and Integer Linear Optimization
    Anal. Chem., Vol. 79, No. 4. (15 February 2007), pp. 1433-1446.
    by PA Dimaggio, CA Floudas
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-01-03 21:02:10 as **
  • Error tolerant searching of uninterpreted tandem mass spectrometry data
    PROTEOMICS, Vol. 2, No. 10. (2002), pp. 1426-1434.
    by David M Creasy, John S Cottrell
    posted to mascot peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-01-03 21:01:12 as **
  • Robust accurate identification of peptides (RAId): deciphering MS2 data using a structured library search with de novo based statistics
    Bioinformatics, Vol. 21, No. 19. (1 October 2005), pp. 3726-3732.
    by Gelio Alves, Yi-Kuo Yu
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-01-03 20:53:55 as **
  • Optimal Construction of Theoretical Spectra for MS/MS Spectra Identification
    OMICS: A Journal of Integrative Biology, Vol. 9, No. 4. (2005), pp. 380-390.
    by Tema Fridman, Vladimir Protopopescu, Greg Hurst, Andrei Borziak, Andrey Gorin
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-12-31 14:42:10 as **
  • Spectral Quality Assessment for High-Throughput Tandem Mass Spectrometry Proteomics
    OMICS: A Journal of Integrative Biology, Vol. 8, No. 3. (2004), pp. 255-265.
    by Samuel Purvine, Natali Kolker, Eugene Kolker
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-12-31 14:39:03 as **
  • Algorithms for Identifying Protein Cross-Links via Tandem Mass Spectrometry
    Journal of Computational Biology, Vol. 8, No. 6. (2001), pp. 571-583.
    by Ting Chen, Jacob D Jaffe, George M Church
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-12-31 14:29:53 as **
  • HMMatch: Peptide Identification by Spectral Matching of Tandem Mass Spectra Using Hidden Markov Models
    Journal of Computational Biology, Vol. 14, No. 8. (2007), pp. 1025-1043.
    by Xue Wu, Chau-Wen Tseng, Nathan Edwards
    posted to peptide-identification peptide-identification-statistics proteomics spectral-matching tandem-mass-spectrometry by nedwards on 2007-12-31 14:21:47 as ** along with 1 person jyuh
  • Integration of 18O Labeling and Solution Isoelectric Focusing in a Shotgun Analysis of Mitochondrial Proteins
    J. Proteome Res., Vol. 6, No. 12. (7 December 2007), pp. 4601-4607.
    by Jinshan Wang, Peter Gutierrez, Nathan Edwards, Catherine Fenselau
    posted to isotope-label mass-spectrometry protein-quantitation proteomics by nedwards on 2007-12-16 19:55:55 as **
  • Fourier-transform mass spectrometry for automated fragmentation and identification of 5-20 kDa proteins in mixtures
    ELECTROPHORESIS, Vol. 23, No. 18. (2002), pp. 3217-3223.
    by Jeffrey R Johnson, Fanyu Meng, Andrew J Forbes, Benjamin J Cargile, Neil L Kelleher
    posted to ft-ms mass-spectrometry proteomics top-down by nedwards on 2007-12-12 20:11:59 as **
  • Top-Down Approaches for Measuring Expression Ratios of Intact Yeast Proteins Using Fourier Transform Mass Spectrometry
    Anal. Chem., Vol. 78, No. 3. (1 February 2006), pp. 686-694.
    by Y Du, BA Parks, S Sohn, KE Kwast, NL Kelleher
    posted to ft-ms mass-spectrometry protein-quantitation proteomics top-down by nedwards on 2007-12-12 20:08:27 as **
  • Quantitative Analysis of Modified Proteins and Their Positional Isomers by Tandem Mass Spectrometry: Human Histone H4
    Anal. Chem., Vol. 78, No. 13. (1 July 2006), pp. 4271-4280.
    by JJ Pesavento, CA Mizzen, NL Kelleher
    posted to ft-ms mass-spectrometry proteomics top-down by nedwards on 2007-12-12 20:03:50 as **
  • Top-Down Proteomics on a Chromatographic Time Scale Using Linear Ion Trap Fourier Transform Hybrid Mass Spectrometers
    Anal. Chem., Vol. 79, No. 21. (1 November 2007), pp. 7984-7991.
    by BA Parks, L Jiang, PM Thomas, CD Wenger, MJ Roth, MT Boyne, PV Burke, KE Kwast, NL Kelleher
    posted to ft-ms mass-spectrometry proteomics top-down by nedwards on 2007-12-12 19:57:05 as **
  • Characterization of the Protein Subset Desorbed by MALDI from Whole Bacterial Cells
    Anal. Chem., Vol. 73, No. 4. (15 February 2001), pp. 746-750.
    by V Ryzhov, C Fenselau
    posted to mass-spectrometry microorganism-identification proteomics by nedwards on 2007-12-11 15:05:43 as **
  • Top-down proteomics for rapid identification of intact microorganisms.
    Anal Chem, Vol. 77, No. 22. (15 November 2005), pp. 7455-7461.
    by PA Demirev, AB Feldman, P Kowalski, JS Lin
    posted to mass-spectrometry microorganism-identification proteomics by nedwards on 2007-12-11 14:59:51 as ** along with 1 person manzanita
  • A targeted proteomics approach to the rapid identification of bacterial cell mixtures by matrix-assisted laser desorption/ionization mass spectrometry
    PROTEOMICS, Vol. 4, No. 10. (2004), pp. 2877-2892.
    by Bettina Warscheid, Catherine Fenselau
    posted to mass-spectrometry microorganism-identification proteomics by nedwards on 2007-12-11 14:48:36 as **
  • Web-accessible proteome databases for microbial research.
    Proteomics, Vol. 4, No. 5. (May 2004), pp. 1305-1313.
    by KP Pleissner, T Eifert, S Buettner, F Schmidt, M Boehme, TF Meyer, SH Kaufmann, PR Jungblut
    posted to microorganism-identification proteomics by nedwards on 2007-12-11 14:40:53 as ** along with 1 person bjorns
  • Quantitative Profile of Five Murine Core Proteomes Using Label-free Functional Proteomics.
    Mol Cell Proteomics, Vol. 6, No. 9. (September 2007), pp. 1560-1573.
    by PR Cutillas, B Vanhaesebroeck
    posted to label-free mass-spectrometry protein-quantitation proteomics by nedwards on 2007-12-11 14:10:48 as ** along with 3 people jyuh js7814 nuin
  • Label-free LC-MS/MS quantitative proteomics for large-scale biomarker discovery in complex samples.
    J Sep Sci (2 August 2007)
    by Yishai Levin, Emanuel Schwarz, Lan Wang, F Markus M Leweke, Sabine Bahn
    posted to label-free mass-spectrometry protein-quantitation proteomics by nedwards on 2007-12-11 14:08:36 as ** along with 1 person jyuh
  • Comparison of Label-free Methods for Quantifying Human Proteins by Shotgun Proteomics
    Mol Cell Proteomics, Vol. 4, No. 10. (1 October 2005), pp. 1487-1502.
    by William M Old, Karen Meyer-Arendt, Lauren Aveline-Wolf, Kevin G Pierce, Alex Mendoza, Joel R Sevinsky, Katheryn A Resing, Natalie G Ahn
    posted to label-free mass-spectrometry protein-quantitation proteomics by nedwards on 2007-12-11 14:01:16 as ** along with 3 people kentsis js7814 nuin
  • Mass spectrometry of the M. smegmatis proteome: protein expression levels correlate with function, operons, and codon bias.
    Genome Res, Vol. 15, No. 8. (August 2005), pp. 1118-1126.
    by R Wang, JT Prince, EM Marcotte
    posted to label-free mass-spectrometry protein-quantitation proteomics proteomics-data by nedwards on 2007-12-10 22:24:45 as ** along with 2 people bjorns madhadron
  • A geometric approach for the alignment of liquid chromatography-mass spectrometry data.
    Bioinformatics, Vol. 23, No. 13. (1 July 2007)
    by E Lange, C Gröpl, O Schulz-Trieglaff, A Leinenbach, C Huber, K Reinert
    posted to label-free mass-spectrometry protein-quantitation proteomics by nedwards on 2007-12-10 22:13:19 as ** along with 1 person jyuh
  • A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data
    Research in Computational Molecular Biology (2007), pp. 473-487.
    by Ole Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Hildebrandt, Knut Reinert
    posted to label-free mass-spectrometry protein-quantitation proteomics by nedwards on 2007-12-10 22:11:32 as ** along with 1 person olberd
    • NB: Du kan sitere denne siden som: http://www.citeulike.org/user/nedwards/tag/proteomics

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