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nickluscombes library [222 articles]

Nye artikler sendt til nickluscombes bibliotek.
  • Distinct class of putative "non-conserved" promoters in humans: Comparative studies of alternative promoters of human and mouse genes
    Genome Res., Vol. 17, No. 7. (1 July 2007), pp. 1005-1014.
    by Katsuki Tsuritani, Takuma Irie, Riu Yamashita, Yuta Sakakibara, Hiroyuki Wakaguri, Akinori Kanai, Junko Mizushima-Sugano, Sumio Sugano, Kenta Nakai, Yutaka Suzuki
    posted to mammals promoters by nickluscombe on 2007-07-03 12:46:58 as ** along with 6 people and 2 groups djkt cabbagezs toshiaki_katayama kmdaily antonkratz cisevol EBI-regulation cis-regulatory-evolution
  • A novel view of the transcriptome revealed from gene trapping in mouse embryonic stem cells
    Genome Res., Vol. 17, No. 7. (1 July 2007), pp. 1051-1060.
    by Guglielmo Roma, Gilda Cobellis, Pamela Claudiani, Francesco Maione, Pedro Cruz, Gaetano Tripoli, Marco Sardiello, Ivana Peluso, Elia Stupka
    posted to expression stem by nickluscombe on 2007-07-03 12:46:13 as ** along with 1 person and 1 group hplatero EBI-regulation
  • Microbial genome data resources
    Current Opinion in Biotechnology, Vol. 18, No. 3. (June 2007), pp. 267-272.
    by Victor M Markowitz
    posted to bacteria by nickluscombe on 2007-07-03 12:36:49 as ** along with 1 group EBI-regulation
  • Systematic Discovery of In Vivo Phosphorylation Networks
    Cell, Vol. 129, No. 7. (29 June 2007), pp. 1415-1426.
    by Rune Linding, Lars J Jensen, Gerard J Ostheimer, Marcel A van Vugt, Claus Jorgensen, Ioana M Miron, Francesca Diella, Karen Colwill, Lorne Taylor, Kelly Elder, Pavel Metalnikov, Vivian Nguyen, Adrian Pasculescu, Jing Jin, Jin G Park, Leona D Samson, James R Woodgett, Robert B Russell, Peer Bork, Michael B Yaffe, Tony Pawson
    posted to no-tag by nickluscombe on 2007-07-03 12:33:40 as ** along with 1 group EBI-regulation
  • Genetic reconstruction of a functional transcriptional regulatory network.
    Nat Genet (8 April 2007)
    by Zhanzhi Hu, Patrick J J Killion, Vishwanath R R Iyer
    posted to expression tf yeast by nickluscombe on 2007-06-13 09:45:15 as ** along with 8 people and 6 groups czeller dpollard xico zwang lizabeth dejori xingxu naegele Bioinformatics EisenLab WetBiology EBI-regulation ic4 generif_paper
  • Network activity-independent coordinated gene expression program for synapse assembly.
    Proc Natl Acad Sci U S A, Vol. 104, No. 11. (13 March 2007), pp. 4658-4663.
    by LM Valor, P Charlesworth, L Humphreys, CN Anderson, SG Grant
    posted to brain expression by nickluscombe on 2007-06-11 09:08:34 as ** along with 1 group EBI-regulation
  • Probing Transcription Factor Dynamics at the Single-Molecule Level in a Living Cell
    Science, Vol. 316, No. 5828. (25 May 2007), pp. 1191-1194.
    by Johan Elf, Gene-Wei Li, Sunney X Xie
    posted to no-tag by nickluscombe on 2007-05-29 07:57:04 as ** along with 7 people and 3 groups ras austin jjray dpollard madhadron balabu samjlord EisenLab EBI-regulation moernerlab
  • Deregulated homeobox gene expression in cancer: cause or consequence?
    Nat Rev Cancer, Vol. 2, No. 10. (October 2002), pp. 777-785.
    by C Abate-Shen
    posted to tf by nickluscombe on 2007-05-23 13:02:40 as ** along with 1 group EBI-regulation
  • The genesis and evolution of homeobox gene clusters
    Nature Reviews Genetics, Vol. 6, No. 12. (10 November 2005), pp. 881-892.
    by Jordi Garcia-Fernàndez
    posted to tf by nickluscombe on 2007-05-23 13:01:51 as ** along with 7 people and 2 groups brant balicea emilyhare BioMaxi timflutre blobbybirdman blackm0k EisenLab EBI-regulation
  • Transcription factors: the right combination for the DNA lock.
    Curr Biol, Vol. 9, No. 12. (17 June 1999)
    by S Khorasanizadeh, F Rastinejad
    posted to tf by nickluscombe on 2007-05-23 13:00:54 as ** along with 1 group EBI-regulation
  • Homeodomain revisited: a lesson from disease-causing mutations.
    Hum Genet, Vol. 116, No. 6. (May 2005), pp. 433-444.
    by YI Chi
    posted to tf by nickluscombe on 2007-05-23 12:59:31 as ** along with 1 group EBI-regulation
  • LIM-homeodomain genes in mammalian development and human disease.
    Mol Biol Rep, Vol. 32, No. 2. (June 2005), pp. 67-77.
    by CS Hunter, SJ Rhodes
    posted to tf by nickluscombe on 2007-05-23 12:58:08 as ** along with 1 group EBI-regulation
  • Homeodomain interactions.
    Curr Opin Struct Biol, Vol. 6, No. 1. (February 1996), pp. 62-68.
    by C Wolberger
    posted to tf by nickluscombe on 2007-05-23 12:45:40 as ** along with 1 group EBI-regulation
  • Combinatorial transcription factors.
    Curr Opin Genet Dev, Vol. 8, No. 5. (October 1998), pp. 552-559.
    by C Wolberger
    posted to tf by nickluscombe on 2007-05-23 12:44:09 as ** along with 1 group EBI-regulation
  • Multiprotein-DNA complexes in transcriptional regulation.
    Annu Rev Biophys Biomol Struct, Vol. 28 (1999), pp. 29-56.
    by C Wolberger
    posted to tf by nickluscombe on 2007-05-23 12:43:00 as ** along with 1 person and 3 groups barry structural_bioinformatics Bioinformatics EBI-regulation
  • The T-box family
    Genome Biology, Vol. 3, No. 6. (2002), pp. reviews3008.1-reviews3008.7.
    by Val Wilson, Frank Conlon
    posted to tf by nickluscombe on 2007-05-23 12:41:09 as ** along with 1 group EBI-regulation
  • KRAB-containing zinc-finger repressor proteins
    Genome Biology, Vol. 4, No. 10. (2003)
    by Raul Urrutia
    posted to tf by nickluscombe on 2007-05-23 12:40:23 as ** along with 1 group EBI-regulation
  • The AP-2 family of transcription factors.
    Genome Biol, Vol. 6, No. 13. (2005)
    by D Eckert, S Buhl, S Weber, R Jäger, H Schorle
    posted to tf by nickluscombe on 2007-05-23 12:39:26 as ** along with 1 group EBI-regulation
  • Transcriptional activation by recruitment.
    Nature, Vol. 386, No. 6625. (10 April 1997), pp. 569-577.
    by M Ptashne, A Gann
    posted to tf by nickluscombe on 2007-05-23 12:29:19 as ** along with 1 group EBI-regulation
  • Yeast transcriptional regulatory mechanisms.
    Annu Rev Genet, Vol. 29 (1995), pp. 651-674.
    by K Struhl
    posted to tf yeast by nickluscombe on 2007-05-23 12:28:53 as ** along with 1 group EBI-regulation
  • The Evolution of Transcriptional Regulation in Eukaryotes
    Mol Biol Evol, Vol. 20, No. 9. (1 September 2003), pp. 1377-1419.
    by Gregory A Wray, Matthew W Hahn, Ehab Abouheif, James P Balhoff, Margaret Pizer, Matthew V Rockman, Laura A Romano
    posted to evolution tf by nickluscombe on 2007-05-23 12:27:04 as ** along with 7 people and 5 groups emptyhb ana dpollard adepace anatiferous mimulus_99 cisevol structural_bioinformatics Bioinformatics EisenLab EBI-regulation cis-regulatory-evolution
  • Helix-loop-helix proteins: regulators of transcription in eucaryotic organisms.
    Mol Cell Biol, Vol. 20, No. 2. (January 2000), pp. 429-440.
    by ME Massari, C Murre
    posted to tf by nickluscombe on 2007-05-23 12:25:52 as ** along with 3 people and 1 group heliopais tuck balicea EBI-regulation
  • Recognition of specific DNA sequences.
    Mol Cell, Vol. 8, No. 5. (November 2001), pp. 937-946.
    by CW Garvie, C Wolberger
    posted to tf by nickluscombe on 2007-05-23 12:24:41 as ** along with 1 group EBI-regulation
  • An overview of the basic helix-loop-helix proteins.
    Genome Biol, Vol. 5, No. 6. (2004)
    by S Jones
    posted to tf by nickluscombe on 2007-05-23 12:23:33 as ** along with 1 group EBI-regulation
  • Coding limits on the number of transcription factors
    BMC Genomics, Vol. 7 (19 September 2006), 239.
    by Shalev Itzkovitz, Tsvi Tlusty, Uri Alon
    posted to no-tag by nickluscombe on 2007-05-23 12:15:20 as ** along with 1 person and 2 groups brant EisenLab EBI-regulation
  • Modelling Transcriptional Interference and DNA Looping in Gene Regulation.
    J Mol Biol (20 April 2007)
    by Ian B B Dodd, Keith E E Shearwin, Kim Sneppen
    posted to modelling by nickluscombe on 2007-05-18 09:19:02 as ** along with 1 group EBI-regulation
  • The Increasing Dominance of Teams in Production of Knowledge
    Science, Vol. 316, No. 5827. (18 May 2007), pp. 1036-1039.
    by Stefan Wuchty, Benjamin F Jones, Brian Uzzi
    posted to social by nickluscombe on 2007-05-18 09:00:39 as ** along with 5 people and 1 group fisherp cmmorel dullhunk MariaChiaraP franzkurfess EBI-regulation
  • The genome of the kinetoplastid parasite, Leishmania major.
    Science, Vol. 309, No. 5733. (15 July 2005), pp. 436-442.
    by AC Ivens, CS Peacock, EA Worthey, L Murphy, G Aggarwal, M Berriman, E Sisk, MA Rajandream, E Adlem, R Aert, A Anupama, Z Apostolou, P Attipoe, N Bason, C Bauser, A Beck, SM Beverley, G Bianchettin, K Borzym, G Bothe, CV Bruschi, M Collins, E Cadag, L Ciarloni, C Clayton, RM Coulson, A Cronin, AK Cruz, RM Davies, J De Gaudenzi, DE Dobson, A Duesterhoeft, G Fazelina, N Fosker, AC Frasch, A Fraser, M Fuchs, C Gabel, A Goble, A Goffeau, D Harris, C Hertz-Fowler, H Hilbert, D Horn, Y Huang, S Klages, A Knights, M Kube, N Larke, L Litvin, A Lord, T Louie, M Marra, D Masuy, K Matthews, S Michaeli, JC Mottram, S Müller-Auer, H Munden, S Nelson, H Norbertczak, K Oliver, S O'neil, M Pentony, TM Pohl, C Price, B Purnelle, MA Quail, E Rabbinowitsch, R Reinhardt, M Rieger, J Rinta, J Robben, L Robertson, JC Ruiz, S Rutter, D Saunders, M Schäfer, J Schein, DC Schwartz, K Seeger, A Seyler, S Sharp, H Shin, D Sivam, R Squares, S Squares, V Tosato, C Vogt, G Volckaert, R Wambutt, T Warren, H Wedler, J Woodward, S Zhou, W Zimmermann, DF Smith, JM Blackwell, KD Stuart, B Barrell, PJ Myler
    posted to no-tag by nickluscombe on 2007-05-09 12:29:58 as ** along with 1 person and 1 group mariakmejia EBI-regulation
  • Refinement and expansion of signaling pathways: the osmotic response network in yeast.
    Genome Res, Vol. 17, No. 3. (March 2007), pp. 358-367.
    by I Gat-Viks, R Shamir
    posted to transcription yeast by nickluscombe on 2007-04-30 10:45:20 as ** along with 2 people and 1 group dragonrez roys EBI-regulation
  • Conservation of Regional Gene Expression in Mouse and Human Brain
    PLoS Genetics, Vol. 3, No. 4. (1 April 2007), e59.
    by Andrew D Strand, Aaron K Aragaki, Zachary C Baquet, Angela Hodges, Philip Cunningham, Peter Holmans, Kevin R Jones, Lesley Jones, Charles Kooperberg, James M Olson
    posted to brain conservation expression by nickluscombe on 2007-04-23 19:22:36 as ** along with 5 people and 1 group Iden-J_GluR cjeans ghattem suizan ppark EBI-regulation
  • Complex Genetic Interactions in a Quantitative Trait Locus.
    PLoS Genet, Vol. 2, No. 2. (3 February 2006)
    by Himanshu Sinha, Bradly P P Nicholson, Lars M M Steinmetz, John H H McCusker
    posted to qtl yeast by nickluscombe on 2007-04-22 08:32:08 as ** along with 1 person and 1 group ccots EBI-regulation
  • Quantifying social group evolution
    Nature, Vol. 446, No. 7136. (5 April 2007), pp. 664-667.
    by Gergely Palla, Albert-Laszlo Barabasi, Tamas Vicsek
    posted to network by nickluscombe on 2007-04-05 09:08:13 as ** along with 36 people and 10 groups lfriedl jasonn styliani compbio tomhebbron A_Olympia FG davidleitner locatellimp yama_tah worksmarts tystl ddahlem scis0000001 AbnerCYH merazzle hala54 lshaw ei sato-ryu guererk azygmunt adriandefroment JeffreyDemaine cckan jaspervoskuilen ibschwartz CareyNadell zwang RBSCLUBFIJI rcrane fionajay ganden koles ruffini maralena Philosophy_of_Information Blog_and_Wiki_Research Semantic-Social-Networks EBI-regulation ComplexAdaptiveSystems CooperativeWriting CISTI-Research AGH-IISG ecoo-ce CSBBGraphTheory
  • Ten Simple Rules for a Successful Collaboration
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e44.
    by Quentin Vicens, Philip E Bourne
    posted to advice by nickluscombe on 2007-03-30 17:53:07 as ** along with 5 people and 2 groups ymel72 jfr leonardo dullhunk rodney EBI-regulation Kopelman_Group
  • To build a better model
    Nat Meth, Vol. 4, No. 4. (April 2007), pp. 367-374.
    by Steven D Buckingham
    posted to methods by nickluscombe on 2007-03-30 12:27:41 as ** along with 1 person and 2 groups mhucka Bioinformatics EBI-regulation
  • Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs
    Nat Biotech, Vol. 22, No. 7. (July 2004), pp. 911-917.
    by Jan O Korbel, Lars J Jensen, Christian von Mering, Peer Bork
    posted to bacteria regulation by nickluscombe on 2007-03-21 17:14:55 as ** along with 4 people and 1 group bicko balajis olympos larsjuhljensen EBI-regulation
  • The Consensus Coding Sequences of Human Breast and Colorectal Cancers
    Science (7 September 2006), 1133427.
    by Tobias Sjoblom, Sian Jones, Laura D Wood, Williams D Parsons, Jimmy Lin, Thomas Barber, Diana Mandelker, Rebecca J Leary, Janine Ptak, Natalie Silliman, Steve Szabo, Phillip Buckhaults, Christopher Farrell, Paul Meeh, Sanford D Markowitz, Joseph Willis, Dawn Dawson, James K Willson, Adi F Gazdar, James Hartigan, Leo Wu, Changsheng Liu, Giovanni Parmigiani, Ben H Park, Kurtis E Bachman, Nickolas Papadopoulos, Bert Vogelstein, Kenneth W Kinzler, Victor E Velculescu
    posted to cancer by nickluscombe on 2007-03-20 14:03:30 as ** along with 17 people and 1 group chrisamiller mingzhi aalibes bicko jfr tuck balajis rdiaz eisei jackjackjjj vicsta jtaylor emb51 ramensky massivemayhem cerami xingxu EBI-regulation
  • High-throughput synergy screening identifies microbial metabolites as combination agents for the treatment of fungal infections
    PNAS, Vol. 104, No. 11. (13 March 2007), pp. 4606-4611.
    by Lixin Zhang, Kezhi Yan, Yu Zhang, Ren Huang, Jiang Bian, Chuansen Zheng, Haixiang Sun, Zhihui Chen, Nuo Sun, Rong An, Fangui Min, Weibo Zhao, Ying Zhuo, Jianlan You, Yongjie Song, Zhenyan Yu, Zhiheng Liu, Keqian Yang, Hong Gao, Huanqin Dai, Xiaoli Zhang, Jian Wang, Chengzhang Fu, Gang Pei, Jintao Liu, Si Zhang, Michael Goodfellow, Yuanying Jiang, Jun Kuai, Guochun Zhou, Xiaoping Chen
    posted to yeast by nickluscombe on 2007-03-13 18:17:18 as ** along with 1 group EBI-regulation
  • General transcription factor specified global gene regulation in archaea
    PNAS, Vol. 104, No. 11. (13 March 2007), pp. 4630-4635.
    by Marc T Facciotti, David J Reiss, Min Pan, Amardeep Kaur, Madhavi Vuthoori, Richard Bonneau, Paul Shannon, Alok Srivastava, Samuel M Donohoe, Leroy E Hood, Nitin S Baliga
    posted to no-tag by nickluscombe on 2007-03-13 18:17:03 as ** along with 1 group EBI-regulation
  • Patterns and rates of intron divergence between humans and chimpanzees
    Genome Biology, Vol. 8 (19 February 2007), R21.
    by Elodie Gazave, Tomas Marques-Bonet, Olga Fernando, Brian Charlesworth, Arcadi Navarro
    posted to evolution introns primates by nickluscombe on 2007-03-08 14:51:01 as ** along with 3 people and 2 groups hdopazo lilou cisevol EBI-regulation cis-regulatory-evolution
  • How to infer gene networks from expression profiles
    Mol Syst Biol, Vol. 3 (13 February 2007)
    by Mukesh Bansal, Vincenzo Belcastro, Alberto Ambesi-Impiombato, Diego di Bernardo
    posted to no-tag by nickluscombe on 2007-02-26 09:55:37 as ** along with 12 people and 2 groups mariakmejia jfr eckart_bindewald wnpx kengg mikaelhuss jrbanga BIBLIOma RockHI lp2 natstreet heliopais EBI-regulation Plantandetc
  • Comparative proteomic and transcriptomic profiling of the fission yeast Schizosaccharomyces pombe
    Mol Syst Biol, Vol. 3 (13 February 2007)
    by Michael W Schmidt, Andres Houseman, Alexander R Ivanov, Dieter A Wolf
    posted to proteomics yeast by nickluscombe on 2007-02-26 09:54:26 as ** along with 1 group EBI-regulation
  • The Regulatory Code for Transcriptional Response Diversity and Its Relation to Genome Structural Properties in A. thaliana
    PLoS Genetics, Vol. 3, No. 2. (1 February 2007), e11.
    by Dirk Walther, Roman Brunnemann, Joachim Selbig
    posted to arabidopsis regulation transcription by nickluscombe on 2007-02-26 09:52:22 as ** along with 1 group EBI-regulation
  • Robustness Can Evolve Gradually in Complex Regulatory Gene Networks with Varying Topology
    PLoS Computational Biology, Vol. 3, No. 2. (1 February 2007), e15.
    by Stefano Ciliberti, Olivier C Martin, Andreas Wagner
    posted to evolution network by nickluscombe on 2007-02-26 09:50:35 as ** along with 14 people and 5 groups eldan ccots indigoviolet emilyhare malcook entropy aswin kengg dolhuis timflutre grahamc shigepong kynn carneiro EisenLab EBI-regulation SNE ParkinsonLab_at_MaRS Plantandetc
  • Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments
    Science, Vol. 315, No. 5815. (23 February 2007), pp. 1126-1130.
    by C von Mering, P Hugenholtz, J Raes, SG Tringe, T Doerks, LJ Jensen, N Ward, P Bork
    posted to bacteria metagenomics by nickluscombe on 2007-02-26 09:47:11 as ** along with 10 people and 5 groups mjetten ana michC bluto agg19954 TaqSys azazello Thaverkamp larsjuhljensen rvgomes microbiology_nijmegen structural_bioinformatics Bioinformatics EBI-regulation Microbial-Ecology
  • Towards a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae.
    Mol Cell Proteomics (2 January 2007)
    by Sean R R Collins, Patrick Kemmeren, Xue-Chu C Zhao, Jack F F Greenblatt, Forrest Spencer, Frank C C Holstege, Jonathan S S Weissman, Nevan J J Krogan
    posted to yeast protein-protein by nickluscombe on 2007-02-05 14:08:13 as ** along with 4 people and 1 group paolomarcatili csanford grahamc roys EBI-regulation
  • Transcription factors in hematopoietic malignancies
    Current Opinion in Genetics & Development, Vol. 17, No. 1. (February 2007), pp. 78-83.
    by Sigal Gery, Phillip H Koeffler
    posted to tf cancer by nickluscombe on 2007-02-05 14:07:12 as ** along with 1 group EBI-regulation
  • Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae.
    Nat Biotechnol, Vol. 22, No. 1. (January 2004), pp. 86-92.
    by J Ihmels, R Levy, N Barkai
    posted to no-tag by nickluscombe on 2007-02-01 18:01:55 as ** along with 6 people and 4 groups hryk icases adepace koller arne shung EisenLab EBI-regulation TNT dIEMoSIRIS
  • Evolution of species interactions in a biofilm community
    Nature, Vol. 445, No. 7127., pp. 533-536.
    by Susse K Hansen, Paul B Rainey, Janus AJ Haagensen, Søren Molin
    posted to biofilm bacteria by nickluscombe on 2007-02-01 11:55:22 as ** along with 3 people and 1 group aswin CareyNadell Pascalichouchou EBI-regulation
  • Epigenetic Control of the foxp3 Locus in Regulatory T Cells
    PLoS Biology, Vol. 5, No. 2. (1 February 2007), e38.
    by Stefan Floess, Jennifer Freyer, Christiane Siewert, Udo Baron, Sven Olek, Julia Polansky, Kerstin Schlawe, Hyun-Dong Chang, Tobias Bopp, Edgar Schmitt, Stefan Klein-Hessling, Edgar Serfling, Alf Hamann, Jochen Huehn
    posted to transcription tf regulation mammals by nickluscombe on 2007-01-31 15:47:41 as ** along with 1 group EBI-regulation
  • Transcriptional regulation of protein complexes within and across species
    PNAS, Vol. 104, No. 4. (23 January 2007), pp. 1283-1288.
    by Kai Tan, Tomer Shlomi, Hoda Feizi, Trey Ideker, Roded Sharan
    posted to transcription regulation protein-protein evolution by nickluscombe on 2007-01-24 04:30:09 as ** along with 4 people and 2 groups carlk icases zwang dylan77 EBI-regulation TNT
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