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nuke2005s library [42 articles]

Nye artikler sendt til nuke2005s bibliotek.
  • SCOP database in 2004: refinements integrate structure and sequence family data.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by A Andreeva, D Howorth, SE Brenner, TJ Hubbard, C Chothia, AG Murzin
    posted to no-tag by nuke2005 on 2005-09-26 02:56:34 as ** along with 3 people tjimenez chad_davis phoenixzxl
  • The evolution of genetic regulatory systems in bacteria.
    Nat Rev Genet, Vol. 5, No. 3. (March 2004), pp. 169-178.
    by HH McAdams, B Srinivasan, AP Arkin
    posted to no-tag by nuke2005 on 2005-09-26 02:56:21 as ** along with 4 people lingchong balajis ryang heliopais
  • Functional genome annotation through phylogenomic mapping
    Nature Biotechnology, Vol. 23, No. 6. (06 June 2005), pp. 691-698.
    by Balaji S Srinivasan, Nora B Caberoy, Garret Suen, Rion G Taylor, Radhika Shah, Farah Tengra, Barry S Goldman, Anthony G Garza, Roy D Welch
    posted to no-tag by nuke2005 on 2005-09-26 02:56:11 as ** along with 11 people and 1 group operon setar tmmurali pggm aprasad balajis lyongu nedwards shoshin blobbybirdman kroos Myxo group
  • A promoter for the first nine genes of the Escherichia coli mra cluster of cell division and cell envelope biosynthesis genes, including ftsI and ftsW.
    J Bacteriol, Vol. 179, No. 18. (September 1997), pp. 5802-5811.
    by H Hara, S Yasuda, K Horiuchi, JT Park
    posted to no-tag by nuke2005 on 2005-09-26 02:55:54 as **
  • Bacterial mitotic machineries.
    Cell, Vol. 116, No. 3. (6 February 2004), pp. 359-366.
    by K Gerdes, J Møller-Jensen, G Ebersbach, T Kruse, K Nordström
    posted to no-tag by nuke2005 on 2005-09-26 02:55:37 as **
  • Identification and characterization of novel competence genes comA and exbB involved in natural genetic transformation of Pseudomonas stutzeri.
    Res Microbiol, Vol. 152, No. 5. (June 2001), pp. 451-460.
    by S Graupner, W Wackernagel
    posted to no-tag by nuke2005 on 2005-09-26 02:55:19 as ** along with 1 person balajis
  • DNA uptake during bacterial transformation.
    Nat Rev Microbiol, Vol. 2, No. 3. (March 2004), pp. 241-249.
    by I Chen, D Dubnau
    posted to no-tag by nuke2005 on 2005-09-26 02:54:53 as ** along with 3 people dayjm treangen karfunkel
  • Dications that target the DNA minor groove: compound design and preparation, DNA interactions, cellular distribution and biological activity.
    Curr Med Chem Anti-Canc Agents, Vol. 5, No. 4. (July 2005), pp. 389-408.
    by WD Wilson, B Nguyen, FA Tanious, A Mathis, JE Hall, CE Stephens, DW Boykin
    posted to no-tag by nuke2005 on 2005-09-26 02:54:15 as **
  • Thiophene-based diamidine forms a "super" at binding minor groove agent.
    J Am Chem Soc, Vol. 126, No. 42. (27 October 2004), pp. 13659-13669.
    by S Mallena, MP Lee, C Bailly, S Neidle, A Kumar, DW Boykin, WD Wilson
    posted to no-tag by nuke2005 on 2005-09-26 02:53:55 as **
  • FlyBase: genes and gene models.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by RA Drysdale, MA Crosby,
    posted to no-tag by nuke2005 on 2005-09-26 02:53:37 as ** along with 2 people dragonrez GustavoLacerda
  • WormBase: a comprehensive data resource for Caenorhabditis biology and genomics.
    Nucleic Acids Res, Vol. 33, No. Database Issue. (1 January 2005)
    by Nansheng Chen, Todd W W Harris, Igor Antoshechkin, Carol Bastiani, Tamberlyn Bieri, Darin Blasiar, Keith Bradnam, Payan Canaran, Juancarlos Chan, Chao-Kung K Chen, Wen J J Chen, Fiona Cunningham, Paul Davis, Eimear Kenny, Ranjana Kishore, Daniel Lawson, Raymond Lee, Hans-Michael M Muller, Cecilia Nakamura, Shraddha Pai, Philip Ozersky, Andrei Petcherski, Anthony Rogers, Aniko Sabo, Erich M M Schwarz, Kimberly Van Auken, Qinghua Wang, Richard Durbin, John Spieth, Paul W W Sternberg, Lincoln D D Stein
    posted to no-tag by nuke2005 on 2005-09-26 02:53:10 as ** along with 4 people rklancer maryee GustavoLacerda tharris
  • Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms.
    Nucleic Acids Res, Vol. 32 Database issue (1 January 2004)
    by KR Christie, S Weng, R Balakrishnan, MC Costanzo, K Dolinski, SS Dwight, SR Engel, B Feierbach, DG Fisk, JE Hirschman, EL Hong, L Issel-Tarver, R Nash, A Sethuraman, B Starr, CL Theesfeld, R Andrada, G Binkley, Q Dong, C Lane, M Schroeder, D Botstein, JM Cherry
    posted to no-tag by nuke2005 on 2005-09-26 02:52:56 as ** along with 1 person and 1 group irenas dbk-lab
  • DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions.
    Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 303-305.
    by I Xenarios, L Salwínski, XJ Duan, P Higney, SM Kim, D Eisenberg
    posted to no-tag by nuke2005 on 2005-09-26 02:52:16 as ** along with 4 people balajis wnpx gurkanbebek carlk
  • GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes.
    Bioinformatics, Vol. 20, No. 18. (12 December 2004), pp. 3710-3715.
    by EI Boyle, S Weng, J Gollub, H Jin, D Botstein, JM Cherry, G Sherlock
    posted to no-tag by nuke2005 on 2005-09-26 02:51:56 as ** along with 3 people and 1 group irenas balajis macavity1g dbk-lab
  • A genomic perspective on protein families.
    Science, Vol. 278, No. 5338. (24 October 1997), pp. 631-637.
    by RL Tatusov, EV Koonin, DJ Lipman
    posted to no-tag by nuke2005 on 2005-09-26 02:51:13 as ** along with 6 people bjorns balajis AaronDarling ruvido ninch Ema
  • Weights for data related by a tree.
    J Mol Biol, Vol. 207, No. 4. (20 June 1989), pp. 647-653.
    by SF Altschul, RJ Carroll, DJ Lipman
    posted to no-tag by nuke2005 on 2005-09-26 02:50:56 as ** along with 1 person newton1234
  • A multiple alignment algorithm for metabolic pathway analysis using enzyme hierarchy.
    Proc Int Conf Intell Syst Mol Biol, Vol. 8 (2000), pp. 376-383.
    by Y Tohsato, H Matsuda, A Hashimoto
    posted to no-tag by nuke2005 on 2005-09-26 02:50:38 as ** along with 2 people ziquje dragonrez
  • PathBLAST: a tool for alignment of protein interaction networks.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by BP Kelley, B Yuan, F Lewitter, R Sharan, BR Stockwell, T Ideker
    posted to no-tag by nuke2005 on 2005-09-26 02:50:19 as ** along with 5 people sza dragonrez AbnerCYH koller carlk
  • A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters.
    Nucleic Acids Res, Vol. 28, No. 20. (15 October 2000), pp. 4021-4028.
    by H Ogata, W Fujibuchi, S Goto, M Kanehisa
    posted to no-tag by nuke2005 on 2005-09-26 02:49:59 as ** along with 3 people and 1 group lfriedl balajis wnpx kdl
  • Pathway alignment: application to the comparative analysis of glycolytic enzymes.
    Biochem J, Vol. 343 Pt 1 (1 October 1999), pp. 115-124.
    by T Dandekar, S Schuster, B Snel, M Huynen, P Bork
    posted to no-tag by nuke2005 on 2005-09-26 02:49:42 as ** along with 1 person balajis
  • Phylogenetic analysis of metabolic pathways.
    J Mol Evol, Vol. 52, No. 6. (June 2001), pp. 471-489.
    by CV Forst, K Schulten
    posted to no-tag by nuke2005 on 2005-09-26 02:49:14 as ** along with 1 person balajis
  • The Gene Ontology (GO) database and informatics resource.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by MA Harris, J Clark, A Ireland, J Lomax, M Ashburner, R Foulger, K Eilbeck, S Lewis, B Marshall, C Mungall, J Richter, GM Rubin, JA Blake, C Bult, M Dolan, H Drabkin, JT Eppig, DP Hill, L Ni, M Ringwald, R Balakrishnan, JM Cherry, KR Christie, MC Costanzo, SS Dwight, S Engel, DG Fisk, JE Hirschman, EL Hong, RS Nash, A Sethuraman, CL Theesfeld, D Botstein, K Dolinski, B Feierbach, T Berardini, S Mundodi, SY Rhee, R Apweiler, D Barrell, E Camon, E Dimmer, V Lee, R Chisholm, P Gaudet, W Kibbe, R Kishore, EM Schwarz, P Sternberg, M Gwinn, L Hannick, J Wortman, M Berriman, V Wood, N de la Cruz, P Tonellato, P Jaiswal, T Seigfried, R White,
    posted to no-tag by nuke2005 on 2005-09-26 02:48:53 as ** along with 9 people and 2 groups katerinakal setar balajis benny dullhunk bundschu sgoetz talponer waghsk mlkd generif_paper
  • The KEGG resource for deciphering the genome.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by M Kanehisa, S Goto, S Kawashima, Y Okuno, M Hattori
    posted to no-tag by nuke2005 on 2005-09-26 02:48:29 as ** along with 8 people and 1 group irenas BragilMassoud lfriedl alexg bioinfo wnpx Garamonfok shung kdl
  • Progressive sequence alignment as a prerequisite to correct phylogenetic trees.
    J Mol Evol, Vol. 25, No. 4. (1987), pp. 351-360.
    by DF Feng, RF Doolittle
    posted to no-tag by nuke2005 on 2005-09-26 02:48:06 as ** along with 3 people balajis AaronDarling newton1234
  • Designing multiple simultaneous seeds for DNA similarity search.
    J Comput Biol, Vol. 12, No. 6. (g 2005), pp. 847-861.
    by Y Sun, J Buhler
    posted to no-tag by nuke2005 on 2005-09-26 02:47:41 as ** along with 2 people treangen nedwards
  • PatternHunter II: highly sensitive and fast homology search.
    Genome Inform Ser Workshop Genome Inform, Vol. 14 (2003), pp. 164-175.
    by M Li, B Ma, D Kisman, J Tromp
    posted to no-tag by nuke2005 on 2005-09-26 02:47:12 as ** along with 1 person treangen
  • PatternHunter: faster and more sensitive homology search.
    Bioinformatics, Vol. 18, No. 3. (March 2002), pp. 440-445.
    by B Ma, J Tromp, M Li
    posted to no-tag by nuke2005 on 2005-09-26 02:46:39 as ** along with 7 people umit catmat treangen natstreet nedwards DickSilver bozdagd
  • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
    Nucleic Acids Res, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402.
    by SF Altschul, TL Madden, AA Schäffer, J Zhang, Z Zhang, W Miller, DJ Lipman
    posted to no-tag by nuke2005 on 2005-09-26 02:45:56 as ** along with 46 people and 4 groups pwais dakelley knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis eweaver david_parsons indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita leelarcombe CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 mijam grottenolm bandrewfox edvin newton1234 mariakmejia granujilla marti CharlesM EisenLab biomedical-nlp Microbial-Ecology Plantandetc
  • Alignment of metabolic pathways.
    Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3401-3408.
    by RY Pinter, O Rokhlenko, E Yeger-Lotem, M Ziv-Ukelson
    posted to no-tag by nuke2005 on 2005-09-26 02:45:16 as ** along with 2 people balajis maralena
  • Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data.
    J Comput Biol, Vol. 12, No. 6. (g 2005), pp. 835-846.
    by R Sharan, T Ideker, B Kelley, R Shamir, RM Karp
    posted to no-tag by nuke2005 on 2005-09-26 02:44:36 as ** along with 1 person and 1 group okarsligil Bioinformatics
  • Conserved pathways within bacteria and yeast as revealed by global protein network alignment.
    Proc Natl Acad Sci U S A, Vol. 100, No. 20. (30 September 2003), pp. 11394-11399.
    by BP Kelley, R Sharan, RM Karp, T Sittler, DE Root, BR Stockwell, T Ideker
    posted to no-tag by nuke2005 on 2005-09-26 02:44:01 as ** along with 9 people and 1 group emmackinnon okarsligil balajis gurkanbebek mirzazadeh denilw shu mdstobbe carlk Bioinformatics
  • A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules
    Science, Vol. 302, No. 5643. (10 October 2003), pp. 249-255.
    by Joshua M Stuart, Eran Segal, Daphne Koller, Stuart K Kim
    posted to no-tag by nuke2005 on 2005-09-26 02:43:39 as ** along with 18 people and 7 groups pengchy nolodie jeremymiller tharris dragonrez textoris lfriedl balajis maryee tardigrade opheliav wnpx neveaire macle raylim lp2 karfunkel vertikalist C. elegans / WormBase kdl Biostatistics Computational-Genomics Bioinformatics Neuroscience BTS-PT-AS-CS
  • A probabilistic functional network of yeast genes.
    Science, Vol. 306, No. 5701. (26 November 2004), pp. 1555-1558.
    by I Lee, SV Date, AT Adai, EM Marcotte
    posted to no-tag by nuke2005 on 2005-09-26 02:43:21 as ** along with 15 people and 3 groups csgillespie irenas lfriedl ccots balajis eweaver opheliav nickluscombe reidy dbgrant kintoki balicea svdate ellakat roys dbk-lab kdl EBI-regulation
  • Toward a functional analysis of the yeast genome through exhaustive two-hybrid screens.
    Nat Genet, Vol. 16, No. 3. (July 1997), pp. 277-282.
    by M Fromont-Racine, JC Rain, P Legrain
    posted to no-tag by nuke2005 on 2005-09-26 02:43:04 as ** along with 2 people adiel gcalda
  • Cluster analysis and display of genome-wide expression patterns.
    Proc Natl Acad Sci U S A, Vol. 95, No. 25. (8 December 1998), pp. 14863-14868.
    by MB Eisen, PT Spellman, PO Brown, D Botstein
    posted to no-tag by nuke2005 on 2005-09-26 02:42:29 as ** along with 22 people and 3 groups pengchy macowell ggrot miguel textoris okarsligil pcahan1 lfriedl balajis lyongu maryee wnpx nirfriedman dquest karfunkel dps kintoki jo_davies tvdbulck bozdagd roys flavio48 kdl Bioinformatics BUiGEM
  • A map of the interactome network of the metazoan C. elegans.
    Science, Vol. 303, No. 5657. (23 January 2004), pp. 540-543.
    by S Li, CM Armstrong, N Bertin, H Ge, S Milstein, M Boxem, PO Vidalain, JD Han, A Chesneau, T Hao, DS Goldberg, N Li, M Martinez, JF Rual, P Lamesch, L Xu, M Tewari, SL Wong, LV Zhang, GF Berriz, L Jacotot, P Vaglio, J Reboul, T Hirozane-Kishikawa, Q Li, HW Gabel, A Elewa, B Baumgartner, DJ Rose, H Yu, S Bosak, R Sequerra, A Fraser, SE Mango, WM Saxton, S Strome, S Van Den Heuvel, F Piano, J Vandenhaute, C Sardet, M Gerstein, L Doucette-Stamm, KC Gunsalus, JW Harper, ME Cusick, FP Roth, DE Hill, M Vidal
    posted to no-tag by nuke2005 on 2005-09-26 02:42:10 as ** along with 8 people and 2 groups tharris shivaram lfriedl lyongu sesejun Chue carlk ksiek C. elegans / WormBase kdl
  • A protein interaction map of Drosophila melanogaster.
    Science, Vol. 302, No. 5651. (5 December 2003), pp. 1727-1736.
    by L Giot, JS Bader, C Brouwer, A Chaudhuri, B Kuang, Y Li, YL Hao, CE Ooi, B Godwin, E Vitols, G Vijayadamodar, P Pochart, H Machineni, M Welsh, Y Kong, B Zerhusen, R Malcolm, Z Varrone, A Collis, M Minto, S Burgess, L McDaniel, E Stimpson, F Spriggs, J Williams, K Neurath, N Ioime, M Agee, E Voss, K Furtak, R Renzulli, N Aanensen, S Carrolla, E Bickelhaupt, Y Lazovatsky, A DaSilva, J Zhong, CA Stanyon, RL Finley, KP White, M Braverman, T Jarvie, S Gold, M Leach, J Knight, RA Shimkets, MP McKenna, J Chant, JM Rothberg
    posted to no-tag by nuke2005 on 2005-09-26 02:41:52 as ** along with 13 people and 2 groups dragonrez shivaram lfriedl lyongu sesejun maryee xico memming eukfn csanford antonkratz carlk cerca kdl WetBiology
  • A comprehensive two-hybrid analysis to explore the yeast protein interactome.
    Proc Natl Acad Sci U S A, Vol. 98, No. 8. (10 April 2001), pp. 4569-4574.
    by T Ito, T Chiba, R Ozawa, M Yoshida, M Hattori, Y Sakaki
    posted to no-tag by nuke2005 on 2005-09-26 02:41:28 as ** along with 14 people and 2 groups adiel dragonrez okarsligil lfriedl chad_davis balajis kengg ruvido gcalda lpfernandes shikin hplatero csanford carlk kdl Bioinformatics
  • From the Cover: Conserved patterns of protein interaction in multiple species.
    Proc Natl Acad Sci U S A, Vol. 102, No. 6. (8 February 2005), pp. 1974-1979.
    by R Sharan, S Suthram, RM Kelley, T Kuhn, S McCuine, P Uetz, T Sittler, RM Karp, T Ideker
    posted to no-tag by nuke2005 on 2005-09-26 02:41:10 as ** along with 13 people and 2 groups tharris jiny sza dragonrez okarsligil balajis maryee gurkanbebek koller cjeans iris_2001 maralena mdstobbe C. elegans / WormBase Bioinformatics
  • Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs".
    Genome Res, Vol. 11, No. 12. (December 2001), pp. 2120-2126.
    by LR Matthews, P Vaglio, J Reboul, H Ge, BP Davis, J Garrels, S Vincent, M Vidal
    posted to no-tag by nuke2005 on 2005-09-26 02:40:54 as ** along with 4 people and 2 groups tharris lfriedl bluto cjeans C. elegans / WormBase kdl
  • From molecular to modular cell biology.
    Nature, Vol. 402, No. 6761 Suppl. (2 December 1999)
    by LH Hartwell, JJ Hopfield, S Leibler, AW Murray
    posted to no-tag by nuke2005 on 2005-09-26 02:40:38 as ** along with 17 people and 8 groups AurelienMazurie rhem1224 balajis rubendrr wnpx i41m adepace javierFellow mmt mirzazadeh carmaus dejori carlk awooga tvdbulck vsausg dragonrez EisenLab TCR_Signaling cytoskeleton-and-afm SysbioMPI-TCells dIEMoSIRIS ic4 generif_paper MoSi-Rostock
  • Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions.
    DNA Res, Vol. 3, No. 3. (30 June 1996), pp. 109-136.
    by T Kaneko, S Sato, H Kotani, A Tanaka, E Asamizu, Y Nakamura, N Miyajima, M Hirosawa, M Sugiura, S Sasamoto, T Kimura, T Hosouchi, A Matsuno, A Muraki, N Nakazaki, K Naruo, S Okumura, S Shimpo, C Takeuchi, T Wada, A Watanabe, M Yamada, M Yasuda, S Tabata
    posted to no-tag by nuke2005 on 2005-09-26 02:40:04 as read along with 1 person Cortel
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