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ptrobajos library [164 articles]

Nye artikler sendt til ptrobajos bibliotek i prioritert rekkefølge .
  • Module-based outcome prediction using breast cancer compendia.
    PLoS ONE, Vol. 2, No. 10. (2007)
    by MH van Vliet, CN Klijn, LF Wessels, MJ Reinders
    posted to cancer classification geneset module by ptrobajo on 2008-03-30 23:25:03 as *** along with 2 people jfr macavity1g
  • Network-based classification of breast cancer metastasis
    Mol Syst Biol, Vol. 3 (16 October 2007)
    by Han-Yu Chuang, Eunjung Lee, Yu-Tsueng Liu, Doheon Lee, Trey Ideker
    posted to classification geneset interaction network pathways protein by ptrobajo on 2008-03-30 23:16:40 as *** along with 14 people and 2 groups jfr kengg frohike mikaelhuss cjeans zwang cerami abhattac shikin oelemento roys dap5087 saman_vp verdicchio Bioinformatics GeneGo
  • Mapping the Arabidopsis organelle proteome
    Vol. 103, No. 17. (25 April 2006), pp. 6518-6523.
    by Tom P Dunkley, Svenja Hester, Ian P Shadforth, John Runions, Thilo Weimar, Sally L Hanton, Julian L Griffin, Conrad Bessant, Federica Brandizzi, Chris Hawes, Rod B Watson, Paul Dupree, Kathryn S Lilley
    posted to arabidopsis mass nazanin spectrometry by ptrobajo on 2008-08-25 16:25:28 as **
  • A mammalian organelle map by protein correlation profiling.
    Cell, Vol. 125, No. 1. (7 April 2006), pp. 187-199.
    by LJ Foster, CL de Hoog, Y Zhang, Y Zhang, X Xie, VK Mootha, M Mann
    posted to localization mass nazanin peroxisome spectrometry by ptrobajo on 2008-08-25 16:22:40 as ** along with 1 person kentsis
  • MANTIS, a phylogenetic framework for multi-species genome comparisons.
    Bioinformatics (19 November 2007)
    by Raphaël Helaers, Athanasia C C Tzika, Yves Van de Peer, Michel C C Milinkovitch
    posted to comparative cross-species function phylogeny by ptrobajo on 2008-08-19 20:55:41 as ** along with 1 person grahamc
  • High-Resolution Mapping of Gene Expression Using Association in an Outbred Mouse Stock
    PLoS Genet, Vol. 4, No. 8. (2008), e1000149.
    by Anatole Ghazalpour, Sudheer Doss, Hyun Kang, Charles Farber, Ping-Zi Wen, Alec Brozell, Ruth Castellanos, Eleazar Eskin, Desmond J Smith, Thomas A Drake, Aldons J Lusis
    posted to association e-qtl expression gene mouse outbred by ptrobajo on 2008-08-08 22:09:54 as ** along with 1 person caseybrown
  • Probabilistic path ranking based on adjacent pairwise coexpression for metabolic transcripts analysis.
    Bioinformatics (Oxford, England), Vol. 24, No. 2. (15 January 2008), pp. 250-257.
    by I Takigawa, H Mamitsuka
    posted to coexpression metabolic network ranking by ptrobajo on 2008-08-08 15:02:58 as **
  • SherLoc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data.
    Bioinformatics, Vol. 23, No. 11. (1 June 2007), pp. 1410-1417.
    by H Shatkay, A Höglund, S Brady, T Blum, P Dönnes, O Kohlbacher
    posted to integration localization mining nazanin peroxisome protein text by ptrobajo on 2008-08-08 12:03:12 as ** along with 2 people raiyar mdstobbe
  • A genome-wide association study of global gene expression
    Nature Genetics, Vol. 39, No. 10. (16 September 2007), pp. 1202-1207.
    by Anna L Dixon, Liming Liang, Miriam F Moffatt, Wei Chen, Simon Heath, Kenny CC Wong, Jenny Taylor, Edward Burnett, Ivo Gut, Martin Farrall, Mark G Lathrop, Gonçalo R Abecasis, William OC Cookson
    posted to association asthma epxression e-qtl gene snp by ptrobajo on 2008-08-08 12:00:10 as ** along with 6 people balicea rdiaz djkt vplagnol jo_davies mimulus_99
  • From E-MAPs to module maps: dissecting quantitative genetic interactions using physical interactions
    Mol Syst Biol, Vol. 4 (15 July 2008)
    by Igor Ulitsky, Tomer Shlomi, Martin Kupiec, Ron Shamir
    posted to e-map genetic interaction module physical by ptrobajo on 2008-08-08 11:01:45 as ** along with 2 people zwang roys
  • Stromal gene expression predicts clinical outcome in breast cancer
    Nat Med, Vol. 14, No. 5. (May 2008), pp. 518-527.
    by Greg Finak, Nicholas Bertos, Francois Pepin, Svetlana Sadekova, Margarita Souleimanova, Hong Zhao, Haiying Chen, Gulbeyaz Omeroglu, Sarkis Meterissian, Atilla Omeroglu, Michael Hallett, Morag Park
    posted to breast cancer expression gene microarray stroma by ptrobajo on 2008-08-08 10:59:09 as ** along with 3 people tmmurali frohike aviad_work
  • Networking metabolites and diseases
    Proceedings of the National Academy of Sciences, Vol. 105, No. 29. (22 July 2008), pp. 9849-9850.
    by Pascal Braun, Edward Rietman, Marc Vidal
    posted to disease metabolism miranda network by ptrobajo on 2008-08-08 10:24:24 as ** along with 3 people jyuh Borelli AbnerCYH
  • Embedding mRNA Stability in Correlation Analysis of Time-Series Gene Expression Data
    PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000141.
    by Lorenzo Farina, Alberto De Santis, Samanta Salvucci, Giorgio Morelli, Ida Ruberti
    posted to expression gene microarray milka series stability time by ptrobajo on 2008-08-08 09:25:08 as ** along with 1 person tmmurali
  • Refining Protein Subcellular Localization
    PLoS Computational Biology, Vol. 1, No. 6. (1 November 2005), e66.
    by Michelle S Scott, Sara J Calafell, David Y Thomas, Michael T Hallett
    posted to localization nazanin peroxisome subcellular by ptrobajo on 2008-08-07 14:35:15 as ** along with 4 people and 1 group dolhuis neils grahamc mdstobbe SNE
  • Analysis of probe level patterns in Affymetrix microarray data
    BMC Bioinformatics, Vol. 8 (04 May 2007), 146.
    by Alexander C Cambon, Abdelnaby Khalyfa, Nigel GF Cooper, Caryn M Thompson
    posted to affymetrix analysis emiel microarray probe by ptrobajo on 2008-08-06 10:49:11 as ** along with 4 people jfr ghattem niallhaslam bertelsen
  • GenCompass: a universal system for analysing gene expression for any genome
    Trends in Biotechnology, Vol. 22, No. 11. (November 2004), pp. 552-555.
    by Nicholas M Luscombe, Madan M Babu
    posted to hexamer microarray niek yeast by ptrobajo on 2008-08-03 21:52:13 as **
  • The genetic code is nearly optimal for allowing additional information within protein-coding sequences.
    Genome Res (9 February 2007)
    by Shalev Itzkovitz, Uri Alon
    posted to code education genetic optimal protein-coding by ptrobajo on 2008-08-03 20:29:57 as ** along with 9 people and 3 groups gpalidwor madhadron msierk raiyar grahamc raylim Minty gwenknight bpcusack Bioinformatics ParkinsonLab_at_MaRS steinmetzlab
  • Ovarian cancer proteomics: Many technologies one goal
    PROTEOMICS - CLINICAL APPLICATIONS, Vol. 2, No. 2. (2008), pp. 195-218.
    by Kothandaraman Narasimhan, Zhao Changqing, Mahesh Choolani
    posted to cancer ovarian review wouter by ptrobajo on 2008-08-01 14:46:22 as **
  • SELDI-TOF proteomic profiling of breast carcinomas identifies clinicopathologically relevant groups of patients similar to previously defined clusters from cDNA expression
    Breast Cancer Research, Vol. 10 (29 May 2008), R48.
    by Kristyna Brozkova, Eva Budinska, Pavel Bouchal, Lenka Hernychova, Dana Knoflickova, Dalibor Valik, Rostislav Vyzula, Borivoj Vojtesek, Rudolf Nenutil
    posted to breast cancer seldi wouter by ptrobajo on 2008-08-01 13:41:44 as **
  • Acute phase serum amyloid A in ovarian cancer as an important component of proteome diagnostic profiling
    PROTEOMICS - Clinical Applications, Vol. 1, No. 1. (2007), pp. 107-117.
    by Sergei A Moshkovskii, Maria A Vlasova, Mikhail A Pyatnitskiy, Olga V Tikhonova, Metanat R Safarova, Oleg V Makarov, Alexander I Archakov
    posted to cancer ovarian seldi wouter by ptrobajo on 2008-08-01 13:41:13 as **
  • SkyGraph: an algorithm for important subgraph discovery in relational graphs
    Data Mining and Knowledge Discovery, Vol. 17, No. 1. (2008), pp. 57-76.
    by Apostolos Papadopoulos, Apostolos Lyritsis, Yannis Manolopoulos
    posted to dragan frequent item network set subgraph by ptrobajo on 2008-08-01 08:45:16 as **
  • Experimental design for efficient identification of gene regulatory networks using sparse Bayesian models
    BMC Systems Biology, Vol. 1, No. 1. (2007)
    by Florian Steinke, Matthias Seeger, Koji Tsuda
    posted to bayesian design dragan experiment knockout network reconstruction by ptrobajo on 2008-07-31 15:59:55 as **
  • Reconstructing gene-regulatory networks from time series, knock-out data, and prior knowledge
    BMC Systems Biology, Vol. 1, No. 1. (2007)
    by Florian Geier, Jens Timmer, Christian Fleck
    posted to bayesian dragan knockout network reconstruction series time by ptrobajo on 2008-07-31 15:53:18 as ** along with 4 people jyuh tuck wnpx Ao_Li2007
  • A Bayesian regression approach to the inference of regulatory networks from gene expression data
    Bioinformatics, Vol. 21, No. 14. (15 July 2005), pp. 3131-3137.
    by Simon Rogers, Mark Girolami
    posted to bayesian dragan knockout network reconstruction regression by ptrobajo on 2008-07-31 15:49:58 as ** along with 1 person tvdbulck
  • Predicting Gene Expression from Sequence: A Reexamination
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e243.
    by Yuan Yuan, Lei Guo, Lei Shen, Jun S Liu
    posted to binding expression factor gene model transcription by ptrobajo on 2008-07-30 13:05:50 as ** along with 3 people maximilianh Ema phoenixzxl
  • Biological sequence classification utilizing positive and unlabeled data.
    Bioinformatics (14 March 2008)
    by Yuanyuan Xiao, Mark R R Segal
    posted to classification nazanin sequence unlabeled by ptrobajo on 2008-07-30 12:15:29 as ** along with 4 people eckart_bindewald mdstobbe djkt jyuh
  • The implications of human metabolic network topology for disease comorbidity.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 29. (22 July 2008), pp. 9880-9885.
    by DS Lee, J Park, KA Kay, NA Christakis, ZN Oltvai, AL Barabási
    posted to bigg disease kegg metabolic miranda network by ptrobajo on 2008-07-30 10:55:24 as ** along with 2 people jyuh Borelli
  • Using the topology of metabolic networks to predict viability of mutant strains.
    Biophys J, Vol. 91, No. 6. (September 2006), pp. 2304-2311.
    by Z Wunderlich, LA Mirny
    posted to dragan knockout metabolic miranda mutant network topology by ptrobajo on 2008-07-30 10:54:50 as ** along with 2 people kentsis cckan
  • Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumors
    Genome Biology, Vol. 8 (10 May 2007), R76.
    by Jason I Herschkowitz, Karl Simin, Victor J Weigman, Igor Mikaelian, Jerry Usary, Zhiyuan Hu, Karen E Rasmussen, Laundette P Jones, Shahin Assefnia, Subhashini Chandrasekharan, Michael G Backlund, Yuzhi Yin, Andrey I Khramtsov, Roy Bastein, John Quackenbush, Robert I Glazer, Powel H Brown, Jeffrey E Green, Levy Kopelovich, Priscilla A Furth, Juan P Palazzo, Olufunmilayo I Olopade, Philip S Bernard, Gary A Churchill, Terry Van Dyke, Charles M Perou
    posted to cancer cross-species human microarray mouse by ptrobajo on 2008-07-14 21:52:03 as **
  • Feature selection and molecular classification of cancer using genetic programming.
    Neoplasia, Vol. 9, No. 4. (April 2007), pp. 292-303.
    by J Yu, J Yu, AA Almal, SM Dhanasekaran, D Ghosh, WP Worzel, AM Chinnaiyan
    posted to feature genetic herman programming selection by ptrobajo on 2008-07-12 22:09:23 as ** along with 1 person jyuh
  • Zebrafish Whole-Adult-Organism Chemogenomics for Large-Scale Predictive and Discovery Chemical Biology
    PLoS Genet, Vol. 4, No. 7. (11 July 2008), e1000121.
    by Siew H Lam, Sinnakarupan Mathavan, Yan Tong, Haixia Li, Karuturi, Yilian Wu, Vinsensius B Vega, Edison T Liu, Zhiyuan Gong
    posted to chemogenomics cross-species zebrafish by ptrobajo on 2008-07-12 21:19:12 as ** along with 1 person jyuh
  • Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation
    Nat Biotech, Vol. 25, No. 1. (February 2007), pp. 117-124.
    by Peng Lu, Christine Vogel, Rong Wang, Xin Yao, Edward M Marcotte
    posted to expression protein quantitative transcription translation by ptrobajo on 2008-07-12 21:18:29 as ** along with 9 people and 1 group jyuh balabu nickluscombe aswin nicoleq dylan77 nedwards ihpark caseybrown EBI-regulation
  • Derivation of stable microarray cancer-differentiating signatures using consensus scoring of multiple random sampling and gene-ranking consistency evaluation.
    Cancer Res, Vol. 67, No. 20. (15 October 2007), pp. 9996-10003.
    by ZQ Tang, LY Han, HH Lin, J Cui, J Jia, BC Low, BW Li, YZ Chen
    posted to classification herman ranking signature stability by ptrobajo on 2008-07-11 15:58:19 as ** along with 1 person jfr
  • Reliable gene signatures for microarray classification: assessment of stability and performance.
    Bioinformatics (31 July 2006)
    by Chad A A Davis, Fabian Gerick, Volker Hintermair, Caroline C C Friedel, Katrin Fundel, Robert Küffner, Ralf Zimmer
    posted to classification herman microarray signature stability by ptrobajo on 2008-07-11 15:37:21 as ** along with 5 people jfr chad_davis rdiaz efge incovoma
  • Classification based upon gene expression data: bias and precision of error rates.
    Bioinformatics (28 March 2007)
    by Ian A A Wood, Peter M M Visscher, Kerrie L L Mengersen
    posted to bias classification cross-validation expression gene precision by ptrobajo on 2008-07-11 15:33:15 as ** along with 2 people jyuh shigepong
  • A Visual Data Mining Tool that Facilitates Reconstruction of Transcription Regulatory Networks.
    PLoS ONE, Vol. 3, No. 3. (2008)
    by DC Jupiter, V Vanburen
    posted to compendium correlation expression gene meta-analysis by ptrobajo on 2008-07-11 15:12:13 as ** along with 1 person jyuh
  • Estimation and testing for the effect of a genetic pathway on a disease outcome using logistic kernel machine regression via logistic mixed models
    BMC Bioinformatics, Vol. 9 (24 June 2008), 292.
    by Dawei Liu, Debashis Ghosh, Xihong Lin
    posted to geneset kernel pathway by ptrobajo on 2008-07-11 14:44:27 as **
  • A Mitochondrial Protein Compendium Elucidates Complex I Disease Biology
    Cell, Vol. 134, No. 1. (11 July 2008), pp. 112-123.
    by David J Pagliarini, Sarah E Calvo, Betty Chang, Sunil A Sheth, Scott B Vafai, Shao-En Ong, Geoffrey A Walford, Canny Sugiana, Avihu Boneh, William K Chen, David E Hill, Marc Vidal, James G Evans, David R Thorburn, Steven A Carr, Vamsi K Mootha
    posted to localization mitochondrial nazanin protein by ptrobajo on 2008-07-11 11:21:38 as ** along with 4 people brianb neils raiyar mdstobbe
  • An Integrated Approach for the Analysis of Biological Pathways using Mixed Models
    PLoS Genet, Vol. 4, No. 7. (4 July 2008), e1000115.
    by Lily Wang, Bing Zhang, Russell D Wolfinger, Xi Chen
    posted to geneset mixed model pathway test by ptrobajo on 2008-07-07 19:46:11 as ** along with 3 people roys aviad_work inesdesantiago
  • Mining co-regulated gene profiles for the detection of functional associations in gene expression data.
    Bioinformatics (30 May 2007)
    by Attila Gyenesei, Ulrich Wagner, Simon Barkow-Oesterreicher, Etzard Stolte, Ralph Schlapbach
    posted to dragan expression gene itemset network by ptrobajo on 2008-07-03 15:53:18 as ** along with 3 people shigepong isimpson renatomilani
  • Prediction of nitrogen metabolism-related genes in Anabaena by kernel-based network analysis.
    Proteomics, Vol. 7, No. 6. (March 2007), pp. 900-909.
    by S Okamoto, Y Yamanishi, S Ehira, S Kawashima, K Tonomura, M Kanehisa
    posted to genes kernel miranda missing proteomics by ptrobajo on 2008-07-03 14:49:04 as **
  • Using the information embedded in the testing sample to break the limits caused by the small sample size in microarray-based classification
    BMC Bioinformatics, Vol. 9 (14 June 2008), 280.
    by Manli Zhu, Aleix M Martinez
    posted to classification lda sample semi-supervised size by ptrobajo on 2008-07-03 12:55:46 as **
  • Classification in the presence of class noise using a probabilistic Kernel Fisher method
    Pattern Recogn., Vol. 40, No. 12. (December 2007), pp. 3349-3357.
    by Yunlei Li, Lodewyk FA Wessels, Dick de Ridder, Marcel JT Reinders
    posted to classification emiel kernel noise pipeline by ptrobajo on 2008-07-01 15:59:27 as **
  • Fasting induces changes in peripheral blood mononuclear cell gene expression profiles related to increases in fatty acid beta-oxidation: functional role of peroxisome proliferator activated receptor alpha in human peripheral blood mononuclear cells.
    The American journal of clinical nutrition, Vol. 86, No. 5. (November 2007), pp. 1515-1523.
    by M Bouwens, LA Afman, M Müller
    posted to fasting mice milka monocyte ppar by ptrobajo on 2008-07-01 12:57:10 as **
  • TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure.
    Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006)
    by BT Alako, D Rainey, H Nijveen, JA Leunissen
    posted to domain peroxisome phylogeny protein by ptrobajo on 2008-07-01 12:27:01 as ** along with 1 person gulkur
  • Mass spectrometry proteomic diagnosis: enacting the double cross-validatory paradigm.
    Journal of computational biology : a journal of computational molecular cell biology, Vol. 13, No. 9. (November 2006), pp. 1591-1605.
    by BJ Mertens, ME De Noo, RA Tollenaar, AM Deelder
    posted to classification cross-validation mass seldi spectrometry by ptrobajo on 2008-07-01 12:26:09 as **
  • A statistical framework for genomic data fusion.
    Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2626-2635.
    by GR Lanckriet, T De Bie, N Cristianini, MI Jordan, WS Noble
    posted to function integration kernel nazanin protein by ptrobajo on 2008-06-27 09:56:04 as ** along with 6 people tmmurali jfr mbeautru nedwards carlk mdstobbe
  • Proteomics Characterization of Mouse Kidney Peroxisomes by Tandem Mass Spectrometry and Protein Correlation Profiling
    Mol Cell Proteomics, Vol. 6, No. 12. (1 December 2007), pp. 2045-2057.
    by Sebastian Wiese, Thomas Gronemeyer, Rob Ofman, Markus Kunze, Claudia P Grou, Jose A Almeida, Martin Eisenacher, Christian Stephan, Heiko Hayen, Lukas Schollenberger, Thomas Korosec, Hans R Waterham, Wolfgang Schliebs, Ralf Erdmann, Johannes Berger, Helmut E Meyer, Wilhelm Just, Jorge E Azevedo, Ronald J Wanders, Bettina Warscheid
    posted to mass mouse nazanin peroxisome spectrometry by ptrobajo on 2008-06-27 09:49:15 as ** along with 1 person mdstobbe
  • Identifying novel peroxisomal proteins
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by John Hawkins, Donna Mahony, Stefan Maetschke, Mark Wakabayashi, Rohan D Teasdale, Mikael Bodén
    posted to localization nazanin peroxisome protein pts1 by ptrobajo on 2008-06-27 09:47:40 as ** along with 2 people viktor21614 mdstobbe
  • Peroxisome targeting signal 1: Is it really a simple tripeptide?
    Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, Vol. 1763, No. 12. (December 2006), pp. 1565-1573.
    by Cecile Brocard, Andreas Hartig
    posted to localization nazanin peroxisome protein pts1 by ptrobajo on 2008-06-27 09:44:15 as ** along with 3 people fhaenel viktor21614 mdstobbe
    • NB: Du kan sitere denne siden som: http://www.citeulike.org/user/ptrobajo/order/to_read

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