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rschulzs library [210 articles]

Nye artikler sendt til rschulzs bibliotek.
  • Connections between mRNA 3' end processing and transcription termination.
    Current opinion in cell biology, Vol. 17, No. 3. (June 2005), pp. 257-261.
    by S Buratowski
    posted to transcription termination review polyadenylation by rschulz on 2008-06-26 09:49:44 as **
  • Nrd1 interacts with the nuclear exosome for 3' processing of RNA polymerase II transcripts.
    Molecular cell, Vol. 21, No. 2. (20 January 2006), pp. 239-248.
    by L Vasiljeva, S Buratowski
    posted to transcription polyadenylation nrd1 exosome by rschulz on 2008-06-26 09:45:04 as **
  • Genes with internal repeats require the THO complex for transcription.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 39. (26 September 2006), pp. 14423-14428.
    by V Voynov, KJ Verstrepen, A Jansen, VM Runner, S Buratowski, GR Fink
    posted to transcription tho tandem repeat by rschulz on 2008-06-26 09:42:01 as **
  • Polyadenylation site choice in yeast is affected by competition between Npl3 and polyadenylation factor CFI.
    RNA (New York, N.Y.), Vol. 13, No. 10. (October 2007), pp. 1756-1764.
    by ME Bucheli, X He, CD Kaplan, CL Moore, S Buratowski
    posted to yeast transcription polyadenylation npl3 cfi by rschulz on 2008-06-26 09:38:10 as **
  • The Rpb4 subunit of RNA polymerase II contributes to cotranscriptional recruitment of 3' processing factors.
    Molecular and cellular biology, Vol. 28, No. 6. (March 2008), pp. 1883-1891.
    by VM Runner, V Podolny, S Buratowski
    posted to transcription rpb4 polymerase polyadenylation by rschulz on 2008-06-26 09:35:30 as **
  • Transcription termination and RNA degradation contribute to silencing of RNA polymerase II transcription within heterochromatin.
    Molecular cell, Vol. 29, No. 3. (15 February 2008), pp. 313-323.
    by L Vasiljeva, M Kim, N Terzi, LM Soares, S Buratowski
    posted to transcription termination rna-degradation heterochromatin by rschulz on 2008-06-26 09:33:10 as **
  • Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
    Nature Genetics, Vol. 39, No. 4. (04 March 2007), pp. 457-466.
    by Michael Weber, Ines Hellmann, Michael B Stadler, Liliana Ramos, Svante Pääbo, Michael Rebhan, Dirk Schübeler
    posted to transcription silencing promoter expression evolution dna-methylation distribution by rschulz on 2008-06-25 11:39:14 as ** along with 4 people vmsr gjuggler epigenetics bioyang
  • An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)
    Genome Res. (24 June 2008), gr.077479.108.
    by Vardhman Rakyan, Thomas Down, Natalie Thorne, Paul Flicek, Eugene Kulesha, Stefan Graf, Eleni Tomazou, Liselotte Backdahl, Nathan Johnson, Marils Herberth, Kevin Howe, David Jackson, Marcos Miretti, Heike Fiegler, John Marioni, Ewan Birney, Tim Hubbard, Nigel Carter, Simon Tavare, Stephan Beck
    posted to transcription tissue-specific genome-wide expression dna-methylation by rschulz on 2008-06-25 11:35:46 as ** along with 1 person vega
  • Methylation silencing of transforming growth factor-beta receptor type II in rat prostate cancers.
    Cancer research, Vol. 68, No. 7. (1 April 2008), pp. 2112-2121.
    by S Yamashita, S Takahashi, N McDonell, N Watanabe, T Niwa, K Hosoya, Y Tsujino, T Shirai, T Ushijima
    posted to nnat dna-methylation cancer by rschulz on 2008-06-25 10:28:39 as **
  • Genomic surveys by methylation-sensitive SNP analysis identify sequence-dependent allele-specific DNA methylation.
    Nature genetics (22 June 2008)
    by Kristi Kerkel, Alexandra Spadola, Eric Yuan, Jolanta Kosek, Le Jiang, Eldad Hod, Kerry Li, Vundavalli V V Murty, Nicole Schupf, Eric Vilain, Mitzi Morris, Fatemeh Haghighi, Benjamin Tycko
    posted to imprinting genome-wide epigenetics dna-methylation allele-specific by rschulz on 2008-06-25 10:23:20 as ** along with 2 people oelemento djkt
  • Inferring causal relationships among different histone modifications and gene expression
    Genome Res. (18 June 2008), gr.073080.107.
    by Hong Yu, Shanshan Zhu, Bing Zhou, Huiling Xue, Jing-Dong J Han
    posted to network histone-code histone epigenetics bioinformatics by rschulz on 2008-06-21 11:24:15 as ** along with 4 people bcondon bootsy ptrobajo fpattyn
  • Maternal and zygotic Dnmt1 are necessary and sufficient for the maintenance of DNA methylation imprints during preimplantation development.
    Genes & development, Vol. 22, No. 12. (15 June 2008), pp. 1607-1616.
    by R Hirasawa, H Chiba, M Kaneda, S Tajima, E Li, R Jaenisch, H Sasaki
    posted to oocyte imprinting epigenetics dnmt1 dna-methylation blastocyst by rschulz on 2008-06-19 19:09:12 as **
  • DNA methylation landscapes: provocative insights from epigenomics.
    Nature reviews. Genetics (8 May 2008)
    by Miho M M Suzuki, Adrian Bird
    posted to review dna-methylation by rschulz on 2008-06-09 09:06:25 as ** along with 4 people jyuh djkt dchughes bootsy
  • A Genomics Analysis of RNA polymerase II modification and chromatin architecture related to 3' end RNA polyadenylation.
    Genome research (16 May 2008)
    by Zheng Lian, Alexander Karpikov, Jin Lian, Milind C C Mahajan, Stephen Hartman, Mark Gerstein, Michael Snyder, Sherman M M Weissman
    posted to polyadenylation intron human antisense alternative by rschulz on 2008-05-20 18:16:48 as **
  • Comparative analysis of human chromosome 7q21 and mouse proximal chromosome 6 reveals a placental-specific imprinted gene, TFPI2/Tfpi2, which requires G9a and Eed for allelic-silencing.
    Genome research (14 May 2008)
    by David Monk, Alexandre Wagschal, Philippe Arnaud, Pari Muller, Layla Parker-Katiraee, Deborah Bourchis, Stephen W W Scherer, Robert Feil, Philip Stanier, Gudrun E E Moore
    posted to tfpi2 placenta imprinting g9a epigenetics eed dnmt3l by rschulz on 2008-05-16 17:10:18 as **
  • Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes
    Nature (10 April 2008)
    by Toshiaki Watanabe, Yasushi Totoki, Atsushi Toyoda, Masahiro Kaneda, Satomi Kuramochi-Miyagawa, Yayoi Obata, Hatsune Chiba, Yuji Kohara, Tomohiro Kono, Toru Nakano, Azim M Surani, Yoshiyuki Sakaki, Hiroyuki Sasaki
    posted to transcription sirna oocyte expression by rschulz on 2008-05-16 08:52:04 as ** along with 2 people eskay gjuggler
  • Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes
    Nature (10 April 2008)
    by Oliver H Tam, Alexei A Aravin, Paula Stein, Angelique Girard, Elizabeth P Murchison, Sihem Cheloufi, Emily Hodges, Martin Anger, Ravi Sachidanandam, Richard M Schultz, Gregory J Hannon
    posted to sirna retrogene oocyte expression by rschulz on 2008-05-16 08:44:15 as ** along with 2 people eskay gjuggler
  • Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
    Nature (07 May 2008)
    by Lars Guelen, Ludo Pagie, Emilie Brasset, Wouter Meuleman, Marius B Faza, Wendy Talhout, Bert H Eussen, Annelies de Klein, Lodewyk Wessels, Wouter de Laat, Bas van Steensel
    posted to organization nucleus lamina expression ctcf chromosome cgi attachment by rschulz on 2008-05-12 14:16:23 as ** along with 1 person vega
  • Regulation of alternative polyadenylation by genomic imprinting.
    Genes & development, Vol. 22, No. 9. (1 May 2008), pp. 1141-1146.
    by Andrew J J Wood, Reiner Schulz, Kathryn Woodfine, Katarzyna Koltowska, Colin V V Beechey, Jo Peters, Deborah Bourc'his, Rebecca J J Oakey
    posted to polyadenylation mcts2 h13 epigenetics dna-methylation alternative by rschulz on 2008-05-08 11:30:05 as read along with 2 people bertelsen stefanjanusz
  • Random monoallelic expression: making a choice.
    Trends in genetics : TIG (29 April 2008)
    by Christel Krueger, Ian M M Morison
    posted to review monoallelic expression epigenetics by rschulz on 2008-05-05 14:09:03 as ** along with 1 person djkt
  • Intronic CpG content and alternative splicing in human genes containing a single cassette exon.
    Epigenetics : official journal of the DNA Methylation Society, Vol. 3, No. 2. (8 April 2008)
    by Andigoni Malousi, Nicos Maglaveras, Sofia Kouidou
    posted to alternative dna-methylation epigenetics intron splicing by rschulz on 2008-04-21 09:11:24 as **
  • Chromosomal Gene Movements Reflect the Recent Origin and Biology of Therian Sex Chromosomes
    PLoS Biology, Vol. 6, No. 4. (1 April 2008), e80.
    by Lukasz Potrzebowski, Nicolas Vinckenbosch, Ana C Marques, Frédéric Chalmel, Bernard Jégou, Henrik Kaessmann
    posted to chrx evolution msci retrotransposition sex by rschulz on 2008-04-14 08:49:58 as ** along with 1 person clearbluespring
  • A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis.
    Gene, Vol. 167, No. 1-2. (29 December 1995)
    by EL Sonnhammer, R Durbin
    posted to dotter tool by rschulz on 2008-04-11 12:38:46 as **
  • RTAnalyzer: a web application for finding new retrotransposons and detecting L1 retrotransposition signatures.
    Nucleic acids research, Vol. 35, No. Web Server issue. (July 2007)
    by JF Lucier, J Perreault, JF Noël, G Boire, JP Perreault
    posted to retrotransposition rtanalyzer tool by rschulz on 2008-04-11 12:38:01 as ** along with 1 person clearbluespring
  • A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease.
    Hum Genet, Vol. 117, No. 5. (September 2005), pp. 411-427.
    by JM Chen, PD Stenson, DN Cooper, C Férec
    posted to endonuclease l1 retrotransposon review tsd by rschulz on 2008-04-11 12:30:06 as ** along with 2 people aprasad clearbluespring
  • PolyA_DB 2: mRNA polyadenylation sites in vertebrate genes.
    Nucleic acids research, Vol. 35, No. Database issue. (January 2007)
    by JY Lee, I Yeh, JY Park, B Tian
    posted to database mammal polyadenylation by rschulz on 2008-04-10 10:41:11 as **
  • Exploration and visualization of gene expression with neuroanatomy in the adult mouse brain
    BMC Bioinformatics, Vol. 9 (18 March 2008), 153.
    by Christopher Lau, Lydia Ng, Carol Thompson, Sayan Pathak, Leonard Kuan, Allan Jones, Mike Hawrylycz
    posted to atlas brain expression mouse neuroblast by rschulz on 2008-04-07 10:25:04 as **
  • Genome-wide atlas of gene expression in the adult mouse brain
    Nature
    by Ed S Lein, Michael J Hawrylycz, Nancy Ao, Mikael Ayres, Amy Bensinger, Amy Bernard, Andrew F Boe, Mark S Boguski, Kevin S Brockway, Emi J Byrnes, Lin Chen, Li Chen, Tsuey-Ming Chen, Mei C Chin, Jimmy Chong, Brian E Crook, Aneta Czaplinska, Chinh N Dang, Suvro Datta, Nick R Dee, Aimee L Desaki, Tsega Desta, Ellen Diep, Tim A Dolbeare, Matthew J Donelan, Hong-Wei Dong, Jennifer G Dougherty, Ben J Duncan, Amanda J Ebbert, Gregor Eichele, Lili K Estin, Casey Faber, Benjamin A Facer, Rick Fields, Shanna R Fischer, Tim P Fliss, Cliff Frensley, Sabrina N Gates, Katie J Glattfelder, Kevin R Halverson, Matthew R Hart, John G Hohmann, Maureen P Howell, Darren P Jeung, Rebecca A Johnson, Patrick T Karr, Reena Kawal, Jolene M Kidney, Rachel H Knapik, Chihchau L Kuan, James H Lake, Annabel R Laramee, Kirk D Larsen, Christopher Lau, Tracy A Lemon, Agnes J Liang, Ying Liu, Lon T Luong, Jesse Michaels, Judith J Morgan, Rebecca J Morgan, Marty T Mortrud, Nerick F Mosqueda, Lydia L Ng, Randy Ng, Geralyn J Orta, Caroline C Overly, Tu H Pak, Sheana E Parry, Sayan D Pathak, Owen C Pearson, Ralph B Puchalski, Zackery L Riley, Hannah R Rockett, Stephen A Rowland, Joshua J Royall, Marcos J Ruiz, Nadia R Sarno, Katherine Schaffnit, Nadiya V Shapovalova, Taz Sivisay, Clifford R Slaughterbeck, Simon C Smith, Kimberly A Smith, Bryan I Smith, Andy J Sodt, Nick N Stewart, Kenda-Ruth Stumpf, Susan M Sunkin, Madhavi Sutram, Angelene Tam, Carey D Teemer, Christina Thaller, Carol L Thompson, Lee R Varnam, Axel Visel, Ray M Whitlock, Paul E Wohnoutka, Crissa K Wolkey, Victoria Y Wong, Matthew Wood, Murat B Yaylaoglu, Rob C Young, Brian L Youngstrom, Xu F Yuan, Bin Zhang, Theresa A Zwingman, Allan R Jones
    posted to atlas brain expression mouse by rschulz on 2008-04-07 10:16:17 as ** along with 14 people and 4 groups jonsta247 provero jeremymiller jfr dchughes adepace jclau mgaldzic nm JBEgwa01 cjeans N0131826 cmor dlmace EisenLab G4ID CHIP Genetics-of-Gambling
  • A novel variant of Inpp5f is imprinted in brain, and its expression is correlated with differential methylation of an internal CpG island.
    Molecular and cellular biology, Vol. 25, No. 13. (July 2005), pp. 5514-5522.
    by JD Choi, LA Underkoffler, AJ Wood, JN Collins, PT Williams, JA Golden, EF Schuster, KM Loomes, RJ Oakey
    posted to brain epigenetics imprinting inpp5f mouse by rschulz on 2008-04-04 11:06:59 as read
  • Retrotransposition as a Source of New Promoters.
    Mol Biol Evol (25 March 2008)
    by Kohji Okamura, Kenta Nakai
    posted to evolution human promoter retrotransposition by rschulz on 2008-03-31 10:08:56 as ** along with 1 person and 1 group cisevol cis-regulatory-evolution
  • Global Analysis of Genetic, Epigenetic and Transcriptional Polymorphisms in Arabidopsis thaliana Using Whole Genome Tiling Arrays.
    PLoS Genet, Vol. 4, No. 3. (March 2008)
    by X Zhang, S Shiu, A Cal, JO Borevitz
    posted to arabidopsis dna-methylation epigenetics microarray plant snp whole-genome by rschulz on 2008-03-31 09:34:11 as ** along with 1 person talponer
  • SNP-specific array-based allele-specific expression analysis.
    Genome Res (27 March 2008)
    by Hans T T Bjornsson, Thomas J J Albert, Christine M M Ladd-Acosta, Roland D D Green, Michael A A Rongione, Christina M M Middle, Rafael A A Irizarry, Karl W W Broman, Andrew P P Feinberg
    posted to epigenetics expression imprinting microarray snp by rschulz on 2008-03-31 09:12:08 as ** along with 1 person and 1 group dpollard RockmanLab
  • Cohesin Complex Promotes Transcriptional Termination between Convergent Genes in S. pombe
    Cell, Vol. 132, No. 6. (21 March 2008), pp. 983-995.
    by Monika Gullerova, Nick J Proudfoot
    posted to cohesin interference termination transcription yeast by rschulz on 2008-03-26 08:41:25 as read
  • Cancer epigenomics: DNA methylomes and histone-modification maps
    Nature Reviews Genetics, Vol. 8, No. 4. (06 March 2007), pp. 286-298.
    by Manel Esteller
    posted to cancer dna-methylation epigenetics histone human review by rschulz on 2008-03-25 10:54:00 as **
  • Evidence for an instructive mechanism of de novo methylation in cancer cells
    Nature Genetics, Vol. 38, No. 2. (24 January 2006), pp. 149-153.
    by Ilana Keshet, Yeshayahu Schlesinger, Shlomit Farkash, Eyal Rand, Merav Hecht, Eran Segal, Eli Pikarski, Richard A Young, Alain Niveleau, Howard Cedar, Itamar Simon
    posted to blcap cancer cgi colon dna-methylation epigenetics human medip nnat promoter prostate whole-genome by rschulz on 2008-03-25 10:49:57 as ** along with 3 people tabu nirfriedman koller
  • Linking Cohesin to Gene Regulation
    Cell, Vol. 132, No. 6. (21 March 2008), pp. 925-928.
    by Daniel Peric-Hupkes, Bas van Steensel
    posted to cohesin ctcf interference mechanism review termination transcription by rschulz on 2008-03-24 13:38:03 as ** along with 1 person maralena
  • Mammalian DNA methyltransferases: a structural perspective.
    Structure, Vol. 16, No. 3. (March 2008), pp. 341-350.
    by X Cheng, RM Blumenthal
    posted to dna-methylation epigenetics methyltransferase protein review structure by rschulz on 2008-03-24 08:29:57 as **
  • Molecular dissection of mammalian RNA polymerase II transcriptional termination.
    Mol Cell, Vol. 29, No. 5. (14 March 2008), pp. 600-610.
    by S West, NJ Proudfoot, MJ Dye
    posted to mechanism polyadenylation termination transcription by rschulz on 2008-03-22 14:06:29 as ** along with 1 person lesander
  • A yeast artificial chromosome-based map of the region of chromosome 20 containing the diabetes-susceptibility gene, MODY1, and a myeloid leukemia related gene.
    Proc Natl Acad Sci U S A, Vol. 93, No. 9. (30 April 1996), pp. 3937-3941.
    by M Stoffel, MM Le Beau, R Espinosa, SF Bohlander, D Le Paslier, D Cohen, KS Xiang, NJ Cox, SS Fajans, GI Bell
    posted to blcap cancer chr20 deletion human leukemia by rschulz on 2008-03-17 17:14:49 as **
  • Molecular genetics of myeloid leukemia: identification of the commonly deleted segment of chromosome 20.
    Blood, Vol. 82, No. 11. (1 December 1993), pp. 3424-3429.
    by D Roulston, R Espinosa, M Stoffel, GI Bell, MM Le Beau
    posted to blcap cancer chr20 deletion human leukemia by rschulz on 2008-03-17 17:12:17 as **
  • Maternal uniparental isodisomy 20 in a foetus with trisomy 20 mosaicism: clinical, cytogenetic and molecular analysis.
    Eur J Hum Genet, Vol. 10, No. 11. (November 2002), pp. 694-698.
    by V Velissariou, T Antoniadi, J Gyftodimou, K Bakou, M Grigoriadou, S Christopoulou, A Hatzipouliou, J Donoghue, P Karatzis, E Katsarou, MB Petersen
    posted to blcap case human upd20 by rschulz on 2008-03-17 15:40:54 as **
  • Cellular programming of plant gene imprinting.
    Cell, Vol. 132, No. 5. (7 March 2008), pp. 735-744.
    by JH Huh, MJ Bauer, TF Hsieh, RL Fischer
    posted to epigenetics evolution imprinting plant review by rschulz on 2008-03-17 08:42:51 as **
  • Genetic and epigenetic contributions to the cortical phenotype in mammals.
    Brain Res Bull, Vol. 75, No. 2-4. (18 March 2008), pp. 391-397.
    by DD Larsen, L Krubitzer
    posted to brain cortex epigenetics mouse review by rschulz on 2008-03-17 08:40:48 as **
  • Epigenetic interactions between transposons and genes: lessons from plants.
    Curr Opin Genet Dev (11 March 2008)
    by Cliff Weil, Rob Martienssen
    posted to epigenetics plant retrotransposition retrotransposon review transposon by rschulz on 2008-03-17 08:37:14 as **
  • Evolutionarily conserved human targets of adenosine to inosine RNA editing.
    Nucleic Acids Res, Vol. 33, No. 4. (2005), pp. 1162-1168.
    by EY Levanon, M Hallegger, Y Kinar, R Shemesh, K Djinovic-Carugo, G Rechavi, MF Jantsch, E Eisenberg
    posted to blcap evolution hairpin intron rna-editing snp by rschulz on 2008-03-13 12:06:37 as **
  • Altered adenosine-to-inosine RNA editing in human cancer
    Genome Res., Vol. 17, No. 11. (1 November 2007), pp. 1586-1595.
    by Nurit Paz, Erez Y Levanon, Ninette Amariglio, Amy B Heimberger, Zvi Ram, Shlomi Constantini, Zohar S Barbash, Konstantin Adamsky, Michal Safran, Avi Hirschberg, Meir Krupsky, Issachar Ben-Dov, Simona Cazacu, Tom Mikkelsen, Chaya Brodie, Eli Eisenberg, Gideon Rechavi
    posted to blcap brain cancer rna-editing by rschulz on 2008-03-13 11:44:48 as ** along with 1 person haarcuba
  • Relationship between expression of BLCAP protein and malignancy of osteosarcoma
    Xibao Yu Fenzi Mianyixue Zazhi, Vol. 19, No. 5. (September 2003)
    by HC Su, YH Zhao, DG Fan, QY Fan, P Zhang, YH Wen, YY Liu
    posted to blcap bone cancer human osteosarcoma protein by rschulz on 2008-03-13 11:36:27 as **
  • A prospective genetic therapy study of extremity saving operations: The regulatory function of gene BLCAP in the development of human osteosarcoma
    Chinese Journal of Clinical Rehabilitation, Vol. 8, No. 5. (February 2004)
    by DG Fan, QY Fan, HZ Zhang, YH Zhang, YY Liu
    posted to blcap bone cancer human osteosarcoma rnai by rschulz on 2008-03-13 11:32:19 as **
  • Structural and functional prediction of BLCAP gene and its encoded protein
    Medical Journal of Wuhan University, Vol. 25, No. 3. (May 2004)
    by J Liu, J Xiong, X Wu
    posted to blcap function human protein by rschulz on 2008-03-13 11:28:38 as **
  • An investigation of polymorphism in human BLCAP gene and their correlation with cervical carcinoma
    Medical Journal of Wuhan University, Vol. 26, No. 4. (July 2005), pp. 435-438.
    by L Zhang, J Liu, X Wu
    posted to blcap cancer cervix human snp by rschulz on 2008-03-13 11:23:50 as **
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