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rvosas library [1144 articles]

Nye artikler sendt til rvosas bibliotek.
  • THE LOCUS OF EVOLUTION: EVO DEVO AND THE GENETICS OF ADAPTATION
    Evolution, Vol. 61, No. 5. (2007), pp. 995-1016.
    by Hopi E Hoekstra, Jerry A Coyne
    posted to speciation proteomics proteins protein genome evolution clock-like adaptation by rvosa on 2008-08-18 04:27:53 as ** along with 11 people and 2 groups bpcusack kndiaye mjoach stevanspringer mcphee dpollard balicea TaqSys epigenetics jayster4 mimulus_99 EisenLab FAB-lab
  • Mixture models in phylogenetic inference
    (28 April 2008)
    by Mark Pagel
    posted to substitution-models rates phylogeny monte-carlo methods markov-chains bayesian by rvosa on 2008-08-18 02:27:00 as ** along with 1 group FAB-lab
  • Modelling Heterotachy in Phylogenetic Inference by Reversible-Jump Markov chain Monte Carlo
    Philosophical Transactions of the Royal Society of London Series B: Biological Sciences, Vol. In review
    by Mark Pagel, Andrew Meade
    posted to substitution-models rates monte-carlo methods markov-chains bayesian by rvosa on 2008-08-18 01:50:23 as ** along with 1 group FAB-lab
  • Comparative analysis by independent contrasts (CAIC): an Apple Macintosh application for analysing comparative data.
    Computer Appl. Biosciences, Vol. 11 (1995), pp. 247-251.
    by Andy Purvis, Andrew Rambaut
    posted to software methods comparative by rvosa on 2008-08-14 03:02:20 as ** along with 1 group FAB-lab
  • Datamonkey: rapid detection of selective pressure on individual sites of codon alignments
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2531-2533.
    by Sergei LK Pond, Simon D Frost
    posted to substitution-models software sequence-evolution selection data-mining by rvosa on 2008-08-14 00:43:38 as ** along with 1 person and 1 group BioNica FAB-lab
  • Immune system evolution among anthropoid primates: parasites, injuries and predators.
    Proceedings of the Royal Society of London, series B: Biological Sciences, Vol. 269, No. 1495. (22 May 2002), pp. 1031-1037.
    by S Semple, G Cowlishaw, PM Bennett
    posted to sexual proteins protein primates predation parasitism mammals evolution ecology comparative animals adaptation by rvosa on 2008-08-13 22:43:08 as ** along with 1 group FAB-lab
  • Promiscuity and the Primate Immune System
    Science, Vol. 290, No. 5494. (10 November 2000), pp. 1168-1170.
    by Charles L Nunn, John L Gittleman, Janis Antonovics
    posted to primates mammals comparative behaviour animals adaptation by rvosa on 2008-08-13 22:16:56 as ** along with 1 group FAB-lab
  • The Tree of Life Web Project
    Zootaxa, No. 1668. (2007), pp. 19-40.
    by David R Maddison, Katja-Sabine Schulz, Wayne P Maddison
    posted to taxonomy phyloinformatics phylogeny evolution data-mining databases biodiversity by rvosa on 2008-08-13 01:07:30 as ** along with 1 group FAB-lab
  • Detecting lineage-specific adaptive evolution of brain-expressed genes in human using rhesus macaque as outgroup
    Genomics, Vol. 88, No. 6. (December 2006), pp. 745-751.
    by Xiao-Jing Yu, Hong-Kun Zheng, Jun Wang, Wen Wang, Bing Su
    posted to sequence-evolution selection ratio-test rates proteomics proteins protein primates phylogenomics models mammals humans hominidae genome genetics evolution encephalization dna divergence data-mining comparative clock-like anthropology animals amino-acid alignment adaptation by rvosa on 2008-08-12 08:00:47 as ** along with 1 group FAB-lab
  • Use and misuse of the gene ontology annotations.
    Nature reviews. Genetics (13 May 2008)
    by Seung Yon Rhee, Valerie Wood, Kara Dolinski, Sorin Draghici
    posted to programming ontology methods genome genetics by rvosa on 2008-08-12 07:52:51 as ** along with 20 people and 2 groups bpcusack marck capitall realzhang gjuggler A_Olympia fpattyn cmzmasek djkt renatomilani giovenko tmmurali cabbagesofdoom ptrobajo RamuAnandakrishnan roys carlk mariakmejia aheilbut jyuh FAB-lab logics of knowledge
  • Genomic data support the hominoid slowdown and an Early Oligocene estimate for the hominoid–cercopithecoid divergence
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 49. (7 December 2004), pp. 17021-17026.
    by Michael E Steiper, Nathan M Young, Tika Y Sukarna
    posted to substitution-models rates primates mammals hominidae fossils dna clock-like cercopithecinae cercopithecidae animals by rvosa on 2008-08-12 07:49:38 as ** along with 1 group FAB-lab
  • Cases in which Parsimony or Compatibility Methods Will be Positively Misleading
    Systematic Zoology, Vol. 27, No. 4. (1978), pp. 401-410.
    by Joseph Felsenstein
    posted to phylogeny parsimony methods inference characters by rvosa on 2008-08-12 05:17:15 as ** along with 1 group FAB-lab
  • Forces Shaping the Fastest Evolving Regions in the Human Genome
    PLoS Genetics, Vol. 2, No. 10. (1 October 2006), e168.
    by Katherine S Pollard, Sofie R Salama, Bryan King, Andrew D Kern, Tim Dreszer, Sol Katzman, Adam Siepel, Jakob S Pedersen, Gill Bejerano, Robert Baertsch, Kate R Rosenbloom, Jim Kent, David Haussler
    posted to substitution-models rates mammals humans hominidae genome evolution dna divergence animals by rvosa on 2008-08-12 04:13:37 as ** along with 2 people and 2 groups nickluscombe iris42 FAB-lab EBI-regulation
  • Frequent False Detection of Positive Selection by the Likelihood Method with Branch-Site Models
    Mol Biol Evol, Vol. 21, No. 7. (1 July 2004), pp. 1332-1339.
    by Jianzhi Zhang
    posted to substitution-models sequence-evolution selection methods likelihood genetics by rvosa on 2008-08-12 04:02:24 as ** along with 1 person and 1 group Garamonfok FAB-lab
  • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
    Nat Genet, Vol. 25, No. 1. (May 2000), pp. 25-29.
    by M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
    posted to proteomics proteins protein ontology genome genetics data-mining databases by rvosa on 2008-08-11 08:24:25 as ** along with 33 people and 6 groups roys dgront marck carlk pablomendes CitoJam aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele FAB-lab kdl Bioinformatics EisenLab T_lab biomedical-nlp
  • The Ensembl genome database project
    Nucl. Acids Res., Vol. 30, No. 1. (1 January 2002), pp. 38-41.
    by T Hubbard, D Barker, E Birney, G Cameron, Y Chen, L Clark, T Cox, J Cuff, V Curwen, T Down, R Durbin, E Eyras, J Gilbert, M Hammond, L Huminiecki, A Kasprzyk, H Lehvaslaiho, P Lijnzaad, C Melsopp, E Mongin, R Pettett, M Pocock, S Potter, A Rust, E Schmidt, S Searle, G Slater, J Smith, W Spooner, A Stabenau, J Stalker, E Stupka, A Ureta-Vidal, I Vastrik, M Clamp
    posted to software programming genome data-mining databases by rvosa on 2008-08-11 07:15:41 as ** along with 4 people and 1 group CitoJam incovoma kynn raylim FAB-lab
  • Genetic variation in mRNA coding sequences of highly conserved genes
    Physiol. Genomics, Vol. 5, No. 3. (2 April 2001), pp. 113-118.
    by Ten, Jeffrey Olsen, David Housman, Frank Baas, Vince Stanton
    posted to variability sequence-evolution proteins protein primates nuclear humans hominidae genetics dna data-mining by rvosa on 2008-08-11 03:27:36 as ** along with 1 group FAB-lab
  • notes Positive selection, relaxation, and acceleration in the evolution of the human and chimp genome.
    PLoS Comput Biol, Vol. 2, No. 4. (April 2006)
    by L Arbiza, J Dopazo, H Dopazo
    posted to sequence-evolution selection ratio-test rates proteins protein primates phylogenomics ontology nuclear mammals humans hominidae genome genetics dna divergence data-mining comparative clock-like animals adaptation by rvosa on 2008-08-11 03:11:42 as read along with 5 people and 3 groups operon marcius jordibc hdopazo Garamonfok FAB-lab BioinfoCIPF SGU-CIPF
  • Molecular evolution of FOXP2, a gene involved in speech and language
    Nature, Vol. 418, No. 6900. (2002), pp. 869-872.
    by Wolfgang Enard, Molly Przeworski, Simon E Fisher, Cecilia S Lai, Victor Wiebe, Takashi Kitano, Anthony P Monaco, Svante Paabo
    posted to sequence-evolution sequence selection rodents rates primates mammals humans hominidae genetics animals by rvosa on 2008-08-10 09:57:48 as ** along with 1 person and 1 group djkt FAB-lab
  • Molecular evolution of human visual pigment genes.
    Molecular biology and evolution, Vol. 6, No. 2. (March 1989), pp. 186-197.
    by S Yokoyama, R Yokoyama
    posted to vision substitution-models sequence-evolution humans evolution by rvosa on 2008-08-10 08:06:00 as ** along with 1 group FAB-lab
  • Aging: a theory based on free radical and radiation chemistry
    Journal of Gerontology, Vol. 2 (1957), pp. 298-300.
    by D Harman
    posted to mitochondrial life-history by rvosa on 2008-08-10 00:33:52 as ** along with 1 group FAB-lab
  • Is the population size of a species relevant to its evolution?
    Evolution Int J Org Evolution, Vol. 55, No. 11. (11 November 2001), pp. 2161-2169.
    by JH Gillespie
    posted to substitution-models selection rates population-genetics by rvosa on 2008-08-09 21:56:15 as ** along with 3 people and 1 group bpcusack aprasad jmeppley FAB-lab
  • Metabolic rate does not calibrate the molecular clock.
    Proc Natl Acad Sci U S A, Vol. 104, No. 39. (25 September 2007), pp. 15388-15393.
    by R Lanfear, JA Thomas, JJ Welch, T Brey, L Bromham
    posted to substitution-models rates morphometrics comparative clock-like by rvosa on 2008-08-09 21:48:24 as ** along with 3 people and 2 groups Borelli Katje kinestetika FAB-lab microbiology_nijmegen
  • Calculating independent contrasts for the comparative study of substitution rates.
    Journal of theoretical biology, Vol. 251, No. 4. (21 April 2008), pp. 667-678.
    by JJ Welch, D Waxman
    posted to substitution-models rates methods likelihood contrasts comparative by rvosa on 2008-08-09 21:42:43 as ** along with 1 group FAB-lab
  • Strong Variations of Mitochondrial Mutation Rate across Mammals--the Longevity Hypothesis
    Mol Biol Evol, Vol. 25, No. 1. (1 January 2008), pp. 120-130.
    by Benoit Nabholz, Sylvain Glemin, Nicolas Galtier
    posted to substitution-models rates population-genetics nuclear mitochondrial mammals life-history comparative clock-like animals by rvosa on 2008-08-09 21:35:08 as ** along with 4 people and 1 group stevanspringer smbe2008 aprasad renatomilani FAB-lab
  • The rate of DNA evolution: effects of body size and temperature on the molecular clock.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 1. (4 January 2005), pp. 140-145.
    by JF Gillooly, AP Allen, GB West, JH Brown
    posted to substitution-models rates nuclear morphometrics mitochondrial genome comparative clock-like by rvosa on 2008-08-09 21:12:36 as ** along with 1 group FAB-lab
  • Lineage-specific evolutionary rate in mammalian mtDNA.
    Molecular biology and evolution, Vol. 17, No. 7. (July 2000), pp. 1022-1031.
    by C Gissi, A Reyes, G Pesole, C Saccone
    posted to substitution-models rates morphometrics mitochondrial mammals genome comparative animals by rvosa on 2008-08-09 21:10:34 as ** along with 1 group FAB-lab
  • Partitioning the variation in mammalian substitution rates.
    Mol Biol Evol, Vol. 20, No. 1. (January 2003), pp. 10-17.
    by NG Smith, A Eyre-Walker
    posted to substitution-models sequence-evolution rates nuclear mitochondrial mammals animals by rvosa on 2008-08-09 21:07:32 as ** along with 1 person and 1 group mdimmic FAB-lab
  • Correlates of substitution rate variation in mammalian protein-coding sequences
    BMC Evolutionary Biology, Vol. 8 (19 February 2008), 53.
    by John J Welch, Olaf RP Bininda-Emonds, Lindell Bromham
    posted to substitution-models rates mammals life-history divergence comparative clock-like animals by rvosa on 2008-08-09 20:49:43 as ** along with 1 group FAB-lab
  • Large punctuational contribution of speciation to evolutionary divergence at the molecular level.
    Science, Vol. 314, No. 5796. (6 October 2006), pp. 119-121.
    by M Pagel, C Venditti, A Meade
    posted to substitution-models speciation rates phylogeny evolution dna divergence clock-like by rvosa on 2008-08-09 11:44:50 as ** along with 4 people and 2 groups bpcusack knaseanka brant shikin FAB-lab EisenLab
  • Phylogenetic Mixture Models Can Reduce Node-Density Artifacts
    Systematic Biology, Vol. 57, No. 2. (2008), pp. 286-293.
    by Chris Venditti, Andrew Meade, Mark Pagel
    posted to substitution-models sequence-evolution phylogeny models methods inference by rvosa on 2008-08-09 10:43:22 as ** along with 1 person and 1 group aprasad FAB-lab
  • A Phylogenetic Mixture Model for Detecting Pattern-Heterogeneity in Gene Sequence or Character-State Data
    Systematic Biology, Vol. 53, No. 4. (2004), 571.
    by Mark Pagel, Andrew Meade
    posted to substitution-models sequence phylogeny models methods genetics characters by rvosa on 2008-08-09 10:21:04 as ** along with 1 person and 1 group taka FAB-lab
  • Constrained models of evolution lead to improved prediction of functional linkage from correlated gain and loss of genes
    Bioinformatics, Vol. 23, No. 1. (1 January 2007), pp. 14-20.
    by Daniel Barker, Andrew Meade, Mark Pagel
    posted to phylogenomics networks models genetics comparative by rvosa on 2008-08-09 09:49:47 as ** along with 1 group FAB-lab
  • Bayesian Analysis of Correlated Evolution of Discrete Characters by Reversible-Jump Markov Chain Monte Carlo.
    The American naturalist, Vol. 167, No. 6. (9 May 2006), pp. 808-825.
    by Mark Pagel, Andrew Meade
    posted to statistics monte-carlo methods markov-chains evolution comparative characters bayesian by rvosa on 2008-08-09 09:41:27 as ** along with 1 group FAB-lab
  • Origin of avian genome size and structure in non-avian dinosaurs
    Nature, Vol. 446, No. 7132. (2007), pp. 180-184.
    by Chris L Organ, Andrew M Shedlock, Andrew Meade, Mark Pagel, Scott V Edwards
    posted to reconstruction genome comparative by rvosa on 2008-08-09 09:34:04 as ** along with 2 people and 2 groups aprasad dchughes G4ID Genetics-of-Gambling
  • Predicting functional gene links from phylogenetic-statistical analyses of whole genomes.
    PLoS Comput Biol, Vol. 1, No. 1. (June 2005), pp. e3-e3.
    by D Barker, M Pagel
    posted to statistics proteomics proteins protein phyloinformatics phylogeny phylogenomics ontology networks genome by rvosa on 2008-08-09 09:29:23 as ** along with 5 people pradiptaray balajis maryee arunyan bartleby
  • Assembly rules for protein networks derived from phylogenetic-statistical analysis of whole genomes
    BMC Evolutionary Biology, Vol. 7, No. Suppl 1. (2007), pp. S16-S16.
    by Mark Pagel, Andrew Meade, Daniel Scott
    posted to statistics protein phylogeny phylogenomics networks genome by rvosa on 2008-08-09 09:25:02 as ** along with 1 group FAB-lab
  • Rates of DNA sequence evolution differ between taxonomic groups
    Science, Vol. 231, No. 4744. (21 March 1986), pp. 1393-1398.
    by RJ Britten
    posted to sequence-evolution rates primates mammals humans dna divergence clock-like animals by rvosa on 2008-08-09 07:28:06 as ** along with 1 group FAB-lab
  • A Complete Neandertal Mitochondrial Genome Sequence Determined by High-Throughput Sequencing
    Cell, Vol. 134 (2008), pp. 416-426.
    by Richard E Green, Anna-Sapfo Malaspinas, Johannes Krause, Adrian W Briggs, Philip LF Johnson, Caroline Uhler, Matthias Meyer, Jeffrey M Good, Tomislav Maricic, Udo Stenzel, Kay Prüfer, Michael Siebauer, Hernán A Burbano, Michael Ronan, Jonathan M Rothberg, Michael Egholm, Pavao Rudan, Dejana Brajković, Željko Kućan, Ivan Gušić, Mårten Wikström, Liisa Laakkonen, Janet Kelso, Montgomery Slatkin, Svante Pääbo
    posted to sequence-evolution sequence primates population-genetics mitochondrial mammals humans hominidae genome dna anthropology animals by rvosa on 2008-08-09 06:50:33 as ** along with 1 group FAB-lab
  • Rate of Fixation of Nucleotide Substitutions in Evolution
    Nature, Vol. 224, No. 5215. (11 October 1969), pp. 149-154.
    by Charles D Laird, Betty L Mcconaughy, Brian J Mccarthy
    posted to sequence-evolution rates primates mammals humans hominidae evolution dna divergence clock-like animals by rvosa on 2008-08-09 06:30:53 as **
  • Molecular Evolution in the Descent of Man
    Nature, Vol. 233, No. 5322. (29 October 1971), pp. 604-613.
    by Morris Goodman, JOHN Barnabas, Genji Matsuda, William G Moore
    posted to sequence-evolution rates primates mammals evolution diversification divergence clock-like amino-acid by rvosa on 2008-08-09 06:20:56 as **
  • The role of immunochemical differences in the phyletic development of human behavior.
    Human biology; an international record of research, Vol. 33 (May 1961), pp. 131-162.
    by M Goodman
    posted to substitution-models sequence-evolution rates by rvosa on 2008-08-09 06:05:11 as **
  • An evaluation of the molecular clock hypothesis using mammalian DNA sequences
    Journal of Molecular Evolution, Vol. 25, No. 4. (1987), pp. 330-342.
    by Wen-Hsiung Li, Masako Tanimura, Paul Sharp
    posted to substitution-models sequence-evolution rodents primates genetics evolution dna animals alignment by rvosa on 2008-08-09 05:56:40 as ** along with 1 group FAB-lab
  • Fast Genes and Slow Clades: Comparative Rates of Molecular Evolution in Mammals
    Evolutionary Bioinformatics, Vol. 3 (2007), pp. 59-85.
    by Olaf RP Bininda-Emonds
    posted to supertree substitution-models sequence-evolution rates mammals data-mining databases clock-like animals by rvosa on 2008-08-08 08:22:08 as **
  • The 2006 NESCent Phyloinformatics Hackathon: A Field Report
    Evolutionary Bioinformatics, Vol. 3 (2007), pp. 287-296.
    by Hilmar Lapp, Sendu Bala, James P Balhoff, Amy Bouck, Naohisa Goto, Mark Holder, Richard Holland, Alisha Holloway, Toshiaki Katayama, Paul O Lewis, Aaron J Mackey, Brian I Osborne, William H Piel, Sergei, Art FY Poon, Wei-Gang Qiu, Jason E Stajich, Arlin Stoltzfus, Tobias Thierer, Albert J Vilella, Rutger A Vos, Christian M Zmasek, Derrick J Zwickl, Todd J Vision
    posted to programming methods algorithms by rvosa on 2008-08-08 07:37:01 as **
  • Detecting putative orthologs.
    Bioinformatics, Vol. 19, No. 13. (1 September 2003), pp. 1710-1711.
    by DP Wall, HB Fraser, AE Hirsh
    posted to phyloinformatics phylogenomics methods likelihood genome data-mining databases alignment algorithms by rvosa on 2008-08-08 07:27:51 as ** along with 5 people and 3 groups cerca ana indigoviolet dquest ninch structural_bioinformatics Bioinformatics EisenLab
  • Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases
    Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2596-2603.
    by Jean-Francois Dufayard, Laurent Duret, Simon Penel, Manolo Gouy, Francois Rechenmann, Guy Perriere
    posted to phyloinformatics phylogenomics methods genome data-mining databases alignment algorithms by rvosa on 2008-08-08 07:21:45 as ** along with 2 people and 2 groups ana stajich structural_bioinformatics Bioinformatics
  • Improving the specificity of high-throughput ortholog prediction.
    BMC Bioinformatics, Vol. 7, No. 1. (28 May 2006)
    by Debra L Fulton, Yvonne Y Li, Matthew R Laird, Benjamin G Horsman, Fiona M Roche, Fiona S Brinkman
    posted to phyloinformatics phylogenomics methods homology genome data-mining alignment algorithms by rvosa on 2008-08-08 07:17:36 as ** along with 4 people and 2 groups cerca operon indigoviolet kaspermunch Bioinformatics EisenLab
  • BranchClust: A phylogenetic algorithm for selecting gene families
    BMC Bioinformatics, Vol. 8 (10 April 2007), 120.
    by Maria S Poptsova, Peter J Gogarten
    posted to programming phyloinformatics phylogenomics methods homology genome data-mining alignment algorithms by rvosa on 2008-08-08 07:02:46 as ** along with 1 person and 2 groups stajich Berkeley Mycology FAB-lab
  • Detecting the historical signature of key innovations using stochastic models of character evolution and cladogenesis.
    Evolution; international journal of organic evolution, Vol. 59, No. 2. (February 2005), pp. 257-265.
    by RH Ree
    posted to speciation rates radiation methods evolution diversification comparative characters adaptation by rvosa on 2008-07-11 19:33:14 as **
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