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shikins library [242 articles]

Nye artikler sendt til shikins bibliotek.
  • Chronic pancreatitis, pseudotumors and other tumor-like lesions.
    Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc, Vol. 20 Suppl 1 (February 2007)
    posted to pancreas cancer by shikin on 2008-07-10 19:30:46 as **
  • Molecular profiling of pancreatic adenocarcinoma and chronic pancreatitis identifies multiple genes differentially regulated in pancreatic cancer.
    Cancer research, Vol. 63, No. 10. (15 May 2003), pp. 2649-2657.
    by CD Logsdon, DM Simeone, C Binkley, T Arumugam, JK Greenson, TJ Giordano, DE Misek, R Kuick, S Hanash
    posted to pancreas gene_expression cancer by shikin on 2008-07-10 13:21:00 as **
  • Development of a large-scale chemogenomics database to improve drug candidate selection and to understand mechanisms of chemical toxicity and action.
    J Biotechnol, Vol. 119, No. 3. (29 September 2005), pp. 219-244.
    by B Ganter, S Tugendreich, CI Pearson, E Ayanoglu, S Baumhueter, KA Bostian, L Brady, LJ Browne, JT Calvin, GJ Day, N Breckenridge, S Dunlea, BP Eynon, LM Furness, J Ferng, MR Fielden, SY Fujimoto, L Gong, C Hu, R Idury, MS Judo, KL Kolaja, MD Lee, C McSorley, JM Minor, RV Nair, G Natsoulis, P Nguyen, SM Nicholson, H Pham, AH Roter, D Sun, S Tan, S Thode, AM Tolley, A Vladimirova, J Yang, Z Zhou, K Jarnagin
    posted to iconix database by shikin on 2008-07-03 16:39:54 as ** along with 1 person jdiggans
  • The liver pharmacological and xenobiotic gene response repertoire
    Mol Syst Biol, Vol. 4 (25 March 2008)
    by Georges Natsoulis, Cecelia I Pearson, Jeremy Gollub, Eynon, Joe Ferng, Ramesh Nair, Radha Idury, May D Lee, Mark R Fielden, Richard J Brennan, Alan H Roter, Kurt Jarnagin
  • MGED standards: work in progress.
    Omics : a journal of integrative biology, Vol. 10, No. 2. (2006), pp. 138-144.
    by CA Ball, A Brazma
    posted to microarray mged by shikin on 2008-06-17 14:32:02 as ** along with 1 person yggdrasil
  • The MGED Ontology: a resource for semantics-based description of microarray experiments
    Bioinformatics, Vol. 22, No. 7. (1 April 2006), pp. 866-873.
    by Patricia L Whetzel, Helen Parkinson, Helen C Causton, Liju Fan, Jennifer Fostel, Gilberto Fragoso, Laurence Game, Mervi Heiskanen, Norman Morrison, Philippe Rocca-Serra, Susanna-Assunta Sansone, Chris Taylor, Joseph White, Christian J Stoeckert
    posted to microarray mged by shikin on 2008-06-17 14:31:44 as ** along with 2 people jfr dansullivanblk
  • Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.
    Nat Genet, Vol. 29, No. 4. (December 2001), pp. 365-371.
  • Statistical tests for differential expression in cDNA microarray experiments
    Genome Biology, Vol. 4, No. 4. (2003)
    by Xiangqin Cui, Gary Churchill
  • Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data
    Nucleic Acids Research, Vol. 33, No. 20. (2005), pp. e175-e175.
    by Manhong Dai, Pinglang Wang, Andrew D Boyd, Georgi Kostov, Brian Athey, Edward G Jones, William E Bunney, Richard M Myers, Terry P Speed, Huda Akil, Stanley J Watson, Fan Meng
  • Evidence for dynamically organized modularity in the yeast protein-protein interaction network
    Nature, Vol. 430, No. 6995. (01 July 2004), pp. 88-93.
    by Jing-Dong J Han, Nicolas Bertin, Tong Hao, Debra S Goldberg, Gabriel F Berriz, Lan V Zhang, Denis Dupuy, Albertha JM Walhout, Michael E Cusick, Frederick P Roth, Marc Vidal
  • Systems biology for cancer.
    Curr Opin Oncol, Vol. 17, No. 1. (January 2005), pp. 44-48.
    by IG Khalil, C Hill
    posted to systems_biology network by shikin on 2008-05-19 18:11:38 as ** along with 1 person and 1 group wnpx GeneGo
  • Computational systems biology.
    Nature, Vol. 420, No. 6912. (14 November 2002), pp. 206-210.
    by H Kitano
  • notes Apoptosis in established and healing psoriasis.
    Dermatology (Basel, Switzerland), Vol. 200, No. 4. (2000), pp. 314-316.
    posted to psoriasis by shikin on 2008-05-15 14:46:30 as **
  • notes The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
    Nat Biotech, Vol. 24, No. 9. (2006), pp. 1151-1161.
  • notes Genome-wide associations of gene expression variation in humans.
    PLoS Genet, Vol. 1, No. 6. (December 2005)
  • Probe set algorithms: Is there a rational best bet?
    BMC Bioinformatics, Vol. 7 (30 August 2006), 395.
    by Jinwook Seo, Eric P Hoffman
  • Evaluating different methods of microarray data normalization
    BMC Bioinformatics, Vol. 7 (23 October 2006), 469.
    by Andre Fujita, Joao R Sato, Leonardo O Rodrigues, Carlos E Ferreira, Mari C Sogayar
    posted to normalization microarray by shikin on 2008-05-06 17:16:00 as ** along with 1 person jfr
  • notes JAMA patient page. Crohn disease.
    JAMA : the journal of the American Medical Association, Vol. 299, No. 14. (9 April 2008)
    by JM Torpy, C Lynm, RM Glass
    posted to crohn by shikin on 2008-05-06 11:55:18 as **
  • Reproducibility of microarray data: a further analysis of microarray quality control (MAQC)data
    BMC Bioinformatics, Vol. 8 (25 October 2007), 412.
    by James Chen, Huey-Miin Hsueh, Robert Delongchamp, Chien-Ju Lin, Chen-An Tsai
    posted to microarray by shikin on 2008-05-05 16:27:26 as ** along with 5 people jyuh giovenko jfr shigepong GeeSharpMinor
  • notes High density synthetic oligonucleotide arrays.
    Nat Genet, Vol. 21, No. 1 Suppl. (January 1999), pp. 20-24.
    by RJ Lipshutz, SP Fodor, TR Gingeras, DJ Lockhart
  • Gene expression studies using microarrays: principles, problems, and prospects.
    Advances in physiology education, Vol. 26, No. 1-4. (December 2002), pp. 256-270.
    by D Murphy
    posted to microarray gene_expression by shikin on 2008-05-05 14:27:27 as **
  • Quantitative monitoring of gene expression patterns with a complementary DNA microarray.
    Science, Vol. 270, No. 5235. (20 October 1995), pp. 467-470.
    by M Schena, D Shalon, RW Davis, PO Brown
  • Noise in Gene Expression: Origins, Consequences, and Control
    Science, Vol. 309, No. 5743. (23 September 2005), pp. 2010-2013.
    by Jonathan M Raser, Erin K O'Shea
  • notes How noisy and replicable are DNA microarry data?
    International journal of bioinformatics research and applications, Vol. 1, No. 1. (2005), pp. 31-50.
    by S Sundaresh, SP Hung, GW Hatfield, P Baldi
    posted to microarray by shikin on 2008-05-05 12:31:13 as **
  • Network Theory to Understand Microarray Studies of Complex Diseases
    Current Molecular Medicine, Vol. 6, No. 6. (September 2006), pp. 695-701.
  • notes Gene annotation and pathway mapping in KEGG.
    Methods in molecular biology (Clifton, N.J.), Vol. 396 (2007), pp. 71-91.
    posted to thesis onthology by shikin on 2008-05-04 19:10:22 as **
  • Network motifs: simple building blocks of complex networks.
    Science, Vol. 298, No. 5594. (25 October 2002), pp. 824-827.
  • notes Genomic analysis of essentiality within protein networks.
    Trends Genet, Vol. 20, No. 6. (June 2004), pp. 227-231.
    by H Yu, D Greenbaum, H Xin Lu, X Zhu, M Gerstein
  • notes The large-scale organization of metabolic networks.
    Nature, Vol. 407, No. 6804. (5 October 2000), pp. 651-654.
    by H Jeong, B Tombor, R Albert, ZN Oltvai, AL Barabási
  • Technological platforms for microarray gene expression profiling.
    Advances in experimental medicine and biology, Vol. 593 (2007), pp. 12-18.
    posted to microarray by shikin on 2008-05-04 15:13:54 as *****
  • Computational analysis of microarray data.
    Nat Rev Genet, Vol. 2, No. 6. (June 2001), pp. 418-427.
  • Systems biology and new technologies enable predictive and preventative medicine.
    Science, Vol. 306, No. 5696. (22 October 2004), pp. 640-643.
    by L Hood, JR Heath, ME Phelps, B Lin
  • Regulatory gene networks and the properties of the developmental process.
    Proc Natl Acad Sci U S A, Vol. 100, No. 4. (18 February 2003), pp. 1475-1480.
    by EH Davidson, DR McClay, L Hood
    posted to systems_biology hood by shikin on 2008-05-04 13:32:41 as ** along with 3 people mjoach nsamways margaritis
  • Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae.
    Molecular & cellular proteomics : MCP, Vol. 1, No. 4. (April 2002), pp. 323-333.
    by TJ Griffin, SP Gygi, T Ideker, B Rist, J Eng, L Hood, R Aebersold
    posted to systems_biology by shikin on 2008-05-04 13:30:30 as ** along with 1 group GeneGo
  • Integrated genomic and proteomic analyses of a systematically perturbed metabolic network.
    Science, Vol. 292, No. 5518. (4 May 2001), pp. 929-934.
  • Global properties of biological networks.
    Drug discovery today, Vol. 10, No. 5. (1 March 2005), pp. 365-372.
    by MG Grigorov
    posted to systems_biology network by shikin on 2008-05-04 13:22:48 as **** along with 1 group GeneGo
  • Systems biology, metabolic modelling and metabolomics in drug discovery and development
    Drug Discovery Today, Vol. 11, No. 23-24. (December 2006), pp. 1085-1092.
    by Douglas B Kell
  • A novel method for visualizing nuclear hormone receptor networks relevant to drug metabolism.
    Drug metabolism and disposition: the biological fate of chemicals, Vol. 33, No. 3. (March 2005), pp. 474-481.
    posted to toxicology systems_biology network genego by shikin on 2008-05-04 13:19:07 as ** along with 1 group GeneGo
  • Pathway mapping tools for analysis of high content data.
    Methods in molecular biology (Clifton, N.J.), Vol. 356 (2007), pp. 319-350.
  • Algorithms for network analysis in systems-ADME/Tox using the MetaCore and MetaDrug platforms
    Xenobiotica, Vol. 36, No. 10-11. (8220), pp. 877-901.
  • Atherosclerosis and liver inflammation induced by increased dietary cholesterol intake: a combined transcriptomics and metabolomics analysis
    Genome Biology, Vol. 8, No. 9. (2007)
    by Robert Kleemann, Lars Verschuren, Marjan van Erk, Yuri Nikolsky, Nicole Cnubben, Elwin Verheij, Age Smilde, Henk Hendriks, Susanne Zadelaar, Graham Smith, Valery Kaznacheev, Tatiana Nikolskaya, Anton Melnikov, Eva H Camejo, Jan van der Greef, Ben van Ommen, Teake Kooistra
  • Modelling microtubule patterns
    Nature Cell Biology, Vol. 8, No. 11., pp. 1204-1211.
    by Eric Karsenti, François Nédélec, Thomas Surrey
  • Data-driven modelling of signal-transduction networks
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 11., pp. 820-828.
    by Kevin A Janes, Michael B Yaffe
  • Physicochemical modelling of cell signalling pathways
    Nature Cell Biology, Vol. 8, No. 11., pp. 1195-1203.
    by Bree B Aldridge, John M Burke, Douglas A Lauffenburger, Peter K Sorger
  • Linking data to models: data regression
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 11. (27 September 2006), pp. 813-819.
    by Khuloud Jaqaman, Gaudenz Danuser
  • Collecting and organizing systematic sets of protein data
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 11., pp. 803-812.
    by John G Albeck, Gavin Macbeath, Forest M White, Peter K Sorger, Douglas A Lauffenburger, Suzanne Gaudet
  • Modelling data across labs, genomes, space and time
    Nature Cell Biology, Vol. 8, No. 11., pp. 1190-1194.
    by Jason R Swedlow, Suzanna E Lewis, Ilya G Goldberg
  • Linking publication, gene and protein data
    Nat Cell Biol, Vol. 8, No. 11. (November 2006), pp. 1183-1189.
    by Paul Kersey, Rolf Apweiler
  • Mapping and sequencing of structural variation from eight human genomes
    Nature, Vol. 453, No. 7191., pp. 56-64.
    by Jeffrey M Kidd, Gregory M Cooper, William F Donahue, Hillary S Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, Alice N Yamada, Peter Tsang, Tera L Newman, Eray Tüzün, Ze Cheng, Heather M Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin Mckernan, Lin Chen, Maika Malig, Joshua D Smith, Joshua M Korn, Steven A Mccarroll, David A Altshuler, Daniel A Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A Nickerson, James C Mullikin, Richard K Wilson, Laurakay Bruhn, Maynard V Olson, Rajinder Kaul, Douglas R Smith, Evan E Eichler
  • Integrative Array Analyzer: a software package for analysis of cross-platform and cross-species microarray data
    Bioinformatics, Vol. 22, No. 13. (1 July 2006), pp. 1665-1667.
    posted to statistics gene_expression by shikin on 2008-04-22 18:45:50 as **
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