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shikins observasjonsliste [1000+ articles]

Nye artikler som matcher shikins observasjonskriterier
  • Query3d: a new method for high-throughput analysis of functional residues in protein structures.
    BMC bioinformatics, Vol. 6 Suppl 4 (1 December 2005)
    by G Ausiello, A Via, M Helmer-Citterich
    posted to 3d by ramensky on 2008-08-14 18:46:54 as **
  • LigASite--a database of biologically relevant binding sites in proteins with known apo-structures.
    Nucleic acids research, Vol. 36, No. Database issue. (January 2008)
    by BH Dessailly, MF Lensink, CA Orengo, SJ Wodak
    posted to drug_design 3d by ramensky on 2008-08-13 16:10:58 as **
  • Screening for copy-number alterations and loss of heterozygosity in chronic lymphocytic leukemia--a comparative study of four differently designed, high resolution microarray platforms.
    Genes, chromosomes & cancer, Vol. 47, No. 8. (August 2008), pp. 697-711.
    by R Gunnarsson, J Staaf, M Jansson, AM Ottesen, H Göransson, U Liljedahl, U Ralfkiaer, M Mansouri, AM Buhl, KE Smedby, H Hjalgrim, AC Syvänen, A Borg, A Isaksson, J Jurlander, G Juliusson, R Rosenquist
    posted to snp-arrays loh copy-number comparison by jfr on 2008-08-05 17:45:35 as ***
  • Deregulated expression of miR-106a predicts survival in human colon cancer patients.
    Genes, chromosomes & cancer, Vol. 47, No. 9. (September 2008), pp. 794-802.
    by R Díaz, J Silva, JM García, Y Lorenzo, V García, C Peña, R Rodríguez, C Muñoz, F García, F Bonilla, G Domínguez
    posted to prognosis mirna colon_cancer by jfr on 2008-08-05 17:44:16 as read
  • The Widespread Impact of Mammalian MicroRNAs on mRNA Repression and Evolution.
    Science (24 November 2005)
    by Kyle Kai-How K Farh, Andrew Grimson, Calvin Jan, Benjamin P P Lewis, Wendy K K Johnston, Lee P P Lim, Christopher B B Burge, David P P Bartel
    posted to mirna by jfr on 2008-08-05 17:41:54 as read along with 14 people and 4 groups caseybrown jerlich mfenner aprasad dayjm marcius eckart_bindewald dpollard mortenlindow mtagaya noano lp2 heliopais Alexander_Kanitz EisenLab microRNA BioinfoCIPF SGU-CIPF
  • Correction of technical bias in clinical microarray data improves concordance with known biological information
    Genome Biology, Vol. 9 (04 February 2008), R26.
    by Aron C Eklund, Zoltan Szallasi
    posted to microarray_technology gene_expression by jfr on 2008-08-05 17:41:04 as **** along with 3 people jyuh cannin bertelsen
  • Modeling Cancer Progression via Pathway Dependencies.
    PLoS Comput Biol, Vol. 4, No. 2. (15 February 2008)
    by Elena J J Edelman, Justin Guinney, Jen-Tsan T Chi, Phillip G G Febbo, Sayan Mukherjee
    posted to progression pathway_analysis model by jfr on 2008-08-05 17:40:00 as **** along with 1 person bootsy
  • Deletion at chromosome band 20p12.1 in colorectal cancer revealed by high resolution array comparative genomic hybridization.
    Genes, chromosomes & cancer, Vol. 44, No. 4. (December 2005), pp. 384-391.
    by EJ Davison, PS Tarpey, H Fiegler, IP Tomlinson, NP Carter
    posted to copy-number colon_cancer by jfr on 2008-08-05 17:38:21 as read
  • Biomarker discovery for colon cancer using a 761 gene RT-PCR assay
    BMC Genomics, Vol. 8 (15 August 2007), 279.
    by Kim M Clark-Langone, Jenny Y Wu, Chithra Sangli, Angela Chen, James L Snable, Anhthu Nguyen, James R Hackett, Joffre Baker, Greg Yothers, Chungyeul Kim, Maureen T Cronin
    posted to rt-pcr colon_cancer classification by jfr on 2008-08-05 17:35:59 as **** along with 1 person jyuh
  • A support vector machine approach for detecting gene-gene interaction.
    Genet Epidemiol (29 October 2007)
    by Shyh-Huei H Chen, Jielin Sun, Latchezar Dimitrov, Aubrey R R Turner, Tamara S S Adams, Deborah A A Meyers, Bao-Li L Chang, S Lilly L Zheng, Henrik Grönberg, Jianfeng Xu, Fang-Chi C Hsu
    posted to gene_interaction classification by jfr on 2008-08-05 17:29:08 as ** along with 1 person jyuh
  • Basal-like breast cancer defined by five biomarkers has superior prognostic value than triple-negative phenotype.
    Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 5. (1 March 2008), pp. 1368-1376.
    by MC Cheang, D Voduc, C Bajdik, S Leung, S McKinney, SK Chia, CM Perou, TO Nielsen
    posted to triple_negative classification breast_cancer by jfr on 2008-08-05 17:28:14 as **
  • Impact of gene expression profiling tests on breast cancer outcomes.
    Evidence report/technology assessment, No. 160. (December 2007), pp. 1-105.
    by L Marchionni, RF Wilson, SS Marinopoulos, AC Wolff, G Parmigiani, EB Bass, SN Goodman
    posted to review gene_expression classification breast_cancer by jfr on 2008-08-05 17:23:02 as read
  • A functional genetic approach identifies the PI3K pathway as a major determinant of trastuzumab resistance in breast cancer.
    Cancer cell, Vol. 12, No. 4. (October 2007), pp. 395-402.
    by K Berns, HM Horlings, BT Hennessy, M Madiredjo, EM Hijmans, K Beelen, SC Linn, AM Gonzalez-Angulo, K Stemke-Hale, M Hauptmann, RL Beijersbergen, GB Mills, MJ van de Vijver, R Bernards
    posted to therapy breast_cancer by jfr on 2008-08-05 17:18:39 as ****
  • Discovery and validation of biomarkers that respond to treatment with brivanib alaninate, a small-molecule VEGFR-2/FGFR-1 antagonist.
    Cancer research, Vol. 67, No. 14. (15 July 2007), pp. 6899-6906.
    by M Ayers, J Fargnoli, A Lewin, Q Wu, JS Platero
    posted to gene_expression colon_cancer by jfr on 2008-08-05 17:06:02 as **
  • Age-specific differences in oncogenic pathway deregulation seen in human breast tumors.
    PLoS ONE, Vol. 3, No. 1. (2008)
    by CK Anders, CR Acharya, DS Hsu, G Broadwater, K Garman, JA Foekens, Y Zhang, Y Wang, K Marcom, JR Marks, S Mukherjee, JR Nevins, KL Blackwell, A Potti
    posted to breast_cancer by jfr on 2008-08-05 17:04:16 as ****
  • Tumour[ndash]stroma interactions in colorectal cancer: converging on [beta]-catenin activation and cancer stemness
    British Journal of Cancer, Vol. aop, No. current. (27 May 2008)
    by NH Le, P Franken, R Fodde
    posted to stroma review colon_cancer by jfr on 2008-08-05 17:03:06 as ***
  • Twenty-five years of quantitative PCR for gene expression analysis.
    BioTechniques, Vol. 44, No. 5. (April 2008), pp. 619-626.
    by H Vanguilder, K Vrana, W Freeman
    posted to rt-pcr review by jfr on 2008-08-05 17:00:35 as *** along with 1 person jyuh
  • Newer pathologic assessment techniques for colorectal carcinoma.
    Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 13, No. 22 Pt 2. (15 November 2007)
    by RR Turner, C Li, CC Compton
    posted to staging colon_cancer by jfr on 2008-08-05 16:55:01 as **
  • Optimal pathologic staging: defining stage II disease.
    Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 13, No. 22 Pt 2. (15 November 2007)
    by CC Compton
    posted to staging stageii colon_cancer by jfr on 2008-08-05 16:54:01 as **
  • American Society of Clinical Oncology recommendations on adjuvant chemotherapy for stage II colon cancer.
    Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 22, No. 16. (15 August 2004), pp. 3408-3419.
    by AB Benson, D Schrag, MR Somerfield, AM Cohen, AT Figueredo, PJ Flynn, MK Krzyzanowska, J Maroun, P McAllister, E Van Cutsem, M Brouwers, M Charette, DG Haller
    posted to therapy stageii colon_cancer by jfr on 2008-08-05 16:52:26 as **
  • Subtypes of breast cancer show preferential site of relapse.
    Cancer research, Vol. 68, No. 9. (1 May 2008), pp. 3108-3114.
    by M Smid, Y Wang, Y Zhang, AM Sieuwerts, J Yu, JG Klijn, JA Foekens, JW Martens
    posted to subtypes breast_cancer by jfr on 2008-08-05 16:51:22 as ***
  • Survival following recurrence in stage II and III colon cancer: findings from the ACCENT data set.
    Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 26, No. 14. (10 May 2008), pp. 2336-2341.
    by MJ O'Connell, ME Campbell, RM Goldberg, A Grothey, JF Seitz, JK Benedetti, T André, DG Haller, DJ Sargent
    posted to survival_analysis stageii colon_cancer by jfr on 2008-08-05 16:22:50 as **
  • Integrated genomic and transcriptomic analysis of ductal carcinoma in situ of the breast.
    Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 7. (1 April 2008), pp. 1956-1965.
    by A Vincent-Salomon, C Lucchesi, N Gruel, V Raynal, G Pierron, R Goudefroye, F Reyal, F Radvanyi, R Salmon, JP Thiery, X Sastre-Garau, B Sigal-Zafrani, A Fourquet, O Delattre,
    posted to integration gene_expression breast_cancer array-cgh by jfr on 2008-08-05 14:41:52 as ***
  • On the necessity of different statistical treatment for Illumina BeadChip and Affymetrix GeneChip data and its significance for biological interpretation
    Biology Direct, Vol. 3 (03 June 2008), 23.
    by Wing-Cheong Wong, Marie Loh, Frank Eisenhaber
    posted to illumina by jfr on 2008-08-05 14:36:33 as ** along with 2 people jyuh ptrobajo
  • A gene expression signature that can predict the recurrence of tamoxifen-treated primary breast cancer.
    Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 6. (15 March 2008), pp. 1744-1752.
    by M Chanrion, V Negre, H Fontaine, N Salvetat, F Bibeau, G Mac Grogan, L Mauriac, D Katsaros, F Molina, C Theillet, JM Darbon
    posted to therapy tamoxifen classification breast_cancer by jfr on 2008-08-05 14:34:19 as ** along with 1 person winterschlaefer
  • FIRMA: a method for detection of alternative splicing from exon array data.
    Bioinformatics (Oxford, England), Vol. 24, No. 15. (1 August 2008), pp. 1707-1714.
    by E Purdom, KM Simpson, MD Robinson, JG Conboy, AV Lapuk, TP Speed
    posted to software exon_arrays alternative_splicing by jfr on 2008-08-05 14:32:07 as read
  • SNP analysis to results (SNPator): a web-based environment oriented to statistical genomics analyses upon SNP data.
    Bioinformatics (Oxford, England), Vol. 24, No. 14. (15 July 2008), pp. 1643-1644.
    by C Morcillo-Suarez, J Alegre, R Sangros, E Gazave, R de Cid, R Milne, J Amigo, A Ferrer-Admetlla, A Moreno-Estrada, M Gardner, F Casals, A Pérez-Lezaun, D Comas, E Bosch, F Calafell, J Bertranpetit, A Navarro
    posted to software snp-arrays by jfr on 2008-08-05 14:31:16 as read along with 1 person jyuh
  • Sparse kernel methods for high-dimensional survival data.
    Bioinformatics (Oxford, England), Vol. 24, No. 14. (15 July 2008), pp. 1632-1638.
    by L Evers, CM Messow
    posted to survival_analysis methodology classification by jfr on 2008-08-05 14:29:45 as ***
  • Meta-analysis of human cancer microarrays reveals GATA3 is integral to the estrogen receptor alpha pathway
    Molecular Cancer, Vol. 7 (04 June 2008), 49.
    by Brian J Wilson, Vincent Giguere
    posted to meta-analysis estrogen breast_cancer by jfr on 2008-08-05 14:27:26 as read
  • Meta-analysis confirms BCL2 is an independent prognostic marker in breast Cancer
    BMC Cancer, Vol. 8 (29 May 2008), 153.
    by Grace M Callagy, Mark J Webber, Paul DP Pharoah, Carlos Caldas
    posted to prognostic meta-analysis breast_cancer by jfr on 2008-08-05 14:24:38 as **
  • MicroRNA-encoding long non-coding RNAs
    BMC Genomics, Vol. 9 (21 May 2008), 236.
    by Shunmin He, Hua Su, Changning Liu, Geir Skogerbo, Housheng He, Dandan He, Xiaopeng Zhu, Tao Liu, Yi Zhao, Runsheng Chen
    posted to mirna by jfr on 2008-08-05 14:22:56 as ** along with 3 people daforerog biozy ealloza
  • Principal components analysis based methodology to identify differentially expressed genes in time-course microarray data
    BMC Bioinformatics, Vol. 9 (06 June 2008), 267.
    by Sudhakar Jonnalagadda, Rajagopalan Srinivasan
    posted to time-course pca by jfr on 2008-08-05 14:20:14 as * along with 1 person ddunbar
  • StAR: a simple tool for the statistical comparison of ROC curves
    BMC Bioinformatics, Vol. 9 (05 June 2008), 265.
    by Ismael A Vergara, Tomas Norambuena, Evandro Ferrada, Alex W Slater, Francisco Melo
    posted to software by jfr on 2008-08-05 14:19:04 as ** along with 3 people zgcarvalho niallhaslam jyuh
  • A simple and robust method for connecting small-molecule drugs using gene-expression signatures
    BMC Bioinformatics, Vol. 9 (02 June 2008), 258.
    by Shu-Dong Zhang, Timothy W Gant
    posted to small_molecule methodology by jfr on 2008-08-05 14:17:15 as ****
  • Missing value imputation for microarray gene expression data using histone acetylation information
    BMC Bioinformatics, Vol. 9 (29 May 2008), 252.
    by Qian Xiang, Xianhua Dai, Yangyang Deng, Caisheng He, Jiang Wang, Jihua Feng, Zhiming Dai
    posted to missing_values by jfr on 2008-08-05 14:14:42 as * along with 1 person jyuh
  • A visual analytics approach for understanding biclustering results from microarray data
    BMC Bioinformatics, Vol. 9 (27 May 2008), 247.
    by Rodrigo Santamaria, Roberto Theron, Luis Quintales
    posted to visualization software clustering by jfr on 2008-08-05 13:39:58 as *** along with 1 person ianturton
  • MD-SeeGH: a platform for integrative analysis of multi-dimensional genomic data
    BMC Bioinformatics, Vol. 9 (20 May 2008), 243.
    by Bryan Chi, Ronald J Deleeuw, Bradley P Coe, Raymond T Ng, Calum Macaulay, Wan L Lam
    posted to software copy-number by jfr on 2008-08-05 13:37:55 as read along with 1 person jyuh
  • Mireval: a web tool for simple microRNA prediction in genome sequences
    Bioinformatics, Vol. 24, No. 11. (1 June 2008), pp. 1394-1396.
    by William Ritchie, Francois-Xavier Theodule, Daniel Gautheret
    posted to software mirna by jfr on 2008-08-04 18:14:28 as ** along with 2 people tharris GustavoLacerda
  • Divisive Correlation Clustering Algorithm (DCCA) for grouping of genes: detecting varying patterns in expression profiles
    Bioinformatics, Vol. 24, No. 11. (1 June 2008), pp. 1359-1366.
    by Anindya Bhattacharya, Rajat K De
    posted to clustering bioinformatics by jfr on 2008-08-04 18:13:17 as * along with 3 people barriot jyuh roys
  • dChipSNP: significance curve and clustering of SNP-array-based loss-of-heterozygosity data
    Bioinformatics, Vol. 20, No. 8. (22 May 2004), pp. 1233-1240.
    by Ming Lin, Lee-Jen Wei, William R Sellers, Marshall Lieberfarb, Wing H Wong, Cheng Li
    posted to software snp-arrays loh by jfr on 2008-08-04 18:09:43 as read along with 1 person cpnP
  • Alternative splicing in colon, bladder, and prostate cancer identified by exon-array analysis
    Mol Cell Proteomics (18 March 2008), M700590-MCP200.
    by Kasper Thorsen, Karina D Sorensen, Anne S Brems-Eskildsen, Charlotte Modin, Mette Gaustadnes, Anne-Mette K Hein, Mogens Kruhoffer, Soren Laurberg, Michael Borre, Kai Wang, Soren Brunak, Adrian R Krainer, Niels Torring, Lars Dyrskjot, Claus L Andersen, Torben F Orntoft
    posted to exon_arrays colon_cancer alternative_splicing by jfr on 2008-08-04 18:07:44 as **** along with 1 person waszak
  • Progression and tumor heterogeneity analysis in early rectal cancer.
    Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 3. (1 February 2008), pp. 772-781.
    by EH Lips, R van Eijk, EJ de Graaf, PG Doornebosch, NF de Miranda, J Oosting, T Karsten, PH Eilers, RA Tollenaar, T van Wezel, H Morreau
    posted to snp-arrays progression mutations model loh by jfr on 2008-08-04 16:04:45 as ****
  • Defining the blueprint of the cancer genome.
    Carcinogenesis, Vol. 29, No. 6. (June 2008), pp. 1087-1091.
    by VE Velculescu
    posted to review mutations can_genes by jfr on 2008-08-04 15:53:32 as *** along with 2 people srp33 cerami
  • The new paradigm of flow cell sequencing
    Genome Res., Vol. 18, No. 6. (1 June 2008), pp. 839-846.
    by Robert A Holt, Steven J Jones
    posted to sequencing review deep_sequencing by jfr on 2008-08-04 15:50:41 as *** along with 12 people and 1 group dchughes serdarbozdag hpaces balicea tharris reyez caseybrown GustavoLacerda kintoki lp2 stajich tmmurali Berkeley Mycology
  • Colon cancer: update on adjuvant therapy.
    Clinical colorectal cancer, Vol. 7, No. 3. (May 2008), pp. 178-183.
    by MS Mano, F Duhoux
    posted to therapy review colon_cancer by jfr on 2008-08-04 15:02:46 as ****
  • Commercialized multigene predictors of clinical outcome for breast cancer.
    The oncologist, Vol. 13, No. 5. (May 2008), pp. 477-493.
    by JS Ross, C Hatzis, WF Symmans, L Pusztai, GN Hortobágyi
    posted to review prognostic classification breast_cancer by jfr on 2008-08-04 14:59:01 as ***
  • Alignment Uncertainty and Genomic Analysis
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 473-476.
    by Karen M Wong, Marc A Suchard, John P Huelsenbeck
    posted to genomics bioinformatics alignment by jfr on 2008-08-04 14:57:05 as **** along with 25 people and 2 groups bpcusack pradiptaray jdelcampo timflutre gracio adacier jyuh bpb aprasad dayjm dpollard tny djkt cjeans zwang lisa1 cactus biomcgary lilou kinestetika dandaman gjuggler renatomilani mclarenv youdon EisenLab microbiology_nijmegen
  • Adjuvant therapy in stage II colon cancer: current approaches.
    The oncologist, Vol. 10, No. 5. (May 2005), pp. 325-331.
    by L Baddi, A Benson
    posted to therapy review colon_cancer by jfr on 2008-08-04 14:54:11 as ***
  • What we could do now: molecular pathology of colorectal cancer.
    Molecular pathology : MP, Vol. 54, No. 4. (August 2001), pp. 206-214.
    by RS Houlston
    posted to review colon_cancer by jfr on 2008-08-04 14:45:19 as ***
  • Convergence of mutation and epigenetic alterations identifies common genes in cancer that predict for poor prognosis.
    PLoS medicine, Vol. 5, No. 5. (27 May 2008)
    by TA Chan, S Glockner, JM Yi, W Chen, L Van Neste, L Cope, JG Herman, V Velculescu, KE Schuebel, N Ahuja, SB Baylin
    posted to mutations methylation can_genes by jfr on 2008-08-04 14:41:19 as ****
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