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softsimus library [5530 articles]

Nye artikler sendt til softsimus bibliotek.
  • On the dynamics of polymer melts: Contribution of Rouse and bending modes
    EPL (Europhysics Letters), Vol. 45, No. 4. (1999), pp. 488-494.
    by L Harnau, RG Winkler, P Reineker
    posted to structure polymers factor by softsimu on 2008-05-16 20:55:33 as **
  • Differences and limits in estimates of persistence length for semi-flexible macromolecules
    Polymer, Vol. 45, No. 17. (5 August 2004), pp. 5995-6002.
    by P Cifra
    posted to polymers persistence length by softsimu on 2008-05-12 17:46:46 as **
  • Molecular dynamics simulation studies on some topics of water molecules on hydrophobic surfaces
    Nuclear Science and Techniques, Vol. 17, No. 2. (April 2006), pp. 71-77.
    by Hai-Ping Fang, Jun Hu
    posted to bubbles by softsimu on 2008-05-05 19:32:48 as **
  • Using the phase-field crystal method in the multi-scale modeling of microstructure evolution
    JOM Journal of the Minerals, Metals and Materials Society, Vol. 59, No. 7. (July 2007), pp. 83-90.
    by N Provatas, J Dantzig, B Athreya, P Chan, P Stefanovic, N Goldenfeld, K Elder
    posted to pfc by softsimu on 2008-05-03 15:10:12 as **
  • Novel Lipid Transfer Property of Two Mitochondrial Proteins that Bridge the Inner and Outer Membranes
    Biophys. J., Vol. 92, No. 1. (1 January 2007), pp. 126-137.
    by Raquel F Epand, Uwe Schlattner, Theo Wallimann, Marie-Lise Lacombe, Richard M Epand
    posted to mitochondria cardiolipin by softsimu on 2008-05-02 18:37:22 as **
  • Tuning the membrane surface potential for efficient toxin import
    Proceedings of the National Academy of Sciences, Vol. 99, No. 13. (25 June 2002), pp. 8654-8659.
    by Stanislav D Zakharov, Tatyana I Rokitskaya, Vladimir L Shapovalov, Yuri N Antonenko, William A Cramer
    posted to toxin peptide cardiolipin by softsimu on 2008-05-01 21:46:56 as **
  • The effects of acyl chain ordering and crystallization on the main phase transition of wet lipid bilayers
    European Biophysics Journal, Vol. 15, No. 2. (1 November 1987), pp. 77-86.
    by MJ Zuckermann, OG Mouritsen
    posted to membranes cardiolipin by softsimu on 2008-05-01 21:43:43 as **
  • Charge-induced tilt in ordered-phase phosphatidylglycerol bilayers Evidence from x-ray diffraction
    Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. 645, No. 1. (6 June 1981), pp. 91-96.
    by Anthony Watts, Karl Harlos, Derek Marsh
    posted to tilt cardiolipin by softsimu on 2008-05-01 20:49:39 as **
  • Intramolecular hydrogen bonding in cardiolipin
    Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. 1066, No. 2. (22 July 1991), pp. 166-174.
    by Wigand Hübner, Henry H Mantsch, Morris Kates
    posted to cardiolipin by softsimu on 2008-05-01 20:47:22 as **
  • Single-Channel Water Permeabilities of Escherichia coli Aquaporins AqpZ and GlpF
    Biophys. J., Vol. 90, No. 7. (1 April 2006), pp. 2270-2284.
    by Morten O Jensen, Ole G Mouritsen
    posted to aquaporin by softsimu on 2008-04-29 19:16:11 as **
  • Self-Avoiding Flexible Polymers under Spherical Confinement
    Nano Lett., Vol. 6, No. 5. (10 May 2006), pp. 901-905.
    by A Cacciuto, E Luijten
    posted to confinement by softsimu on 2008-04-29 18:35:59 as **
  • Confinement-Driven Translocation of a Flexible Polymer
    Physical Review Letters, Vol. 96, No. 23. (2006)
    by Angelo Cacciuto, Erik Luijten
    posted to transport-pore translocation by softsimu on 2008-04-29 18:31:43 as **
  • Structural basis of water-specific transport through the AQP1 water channel
    Nature, Vol. 414, No. 6866. (20 December 2001), pp. 872-878.
    by Haixin Sui, Bong-Gyoon Han, John K Lee, Peter Walian, Bing K Jap
    posted to transport-pore aquaporin by softsimu on 2008-04-29 18:29:42 as **
  • Water Transport in Aquaporins: Osmotic Permeability Matrix Analysis of Molecular Dynamics Simulations
    Biophys. J., Vol. 93, No. 2. (15 July 2007), pp. 373-385.
    by Masanori Hashido, Akinori Kidera, Mitsunori Ikeguchi
    posted to transport-pore by softsimu on 2008-04-29 18:28:51 as **
  • Single-File Transport of Water Molecules through a Carbon Nanotube
    Physical Review Letters, Vol. 89, No. 6. (23 July 2002), 064503.
    by Alexander Berezhkovskii, Gerhard Hummer
    posted to transport-pore by softsimu on 2008-04-29 18:20:48 as **
  • Nanoscale hydrodynamicsEnhanced flow in carbon nanotubes
    Nature, Vol. 438, No. 7064. (02 November 2005), pp. 44-44.
    by Mainak Majumder, Nitin Chopra, Rodney Andrews, Bruce J Hinds
    posted to transport-pore by softsimu on 2008-04-29 17:48:55 as **
  • Filling and emptying kinetics of carbon nanotubes in water
    The Journal of Chemical Physics, Vol. 117, No. 23. (2002), pp. 10789-10795.
    by Aparna Waghe, Jayendran C Rasaiah, Gerhard Hummer
    posted to transport-pore by softsimu on 2008-04-29 17:47:56 as **
  • Fluid flow in carbon nanotubes and nanopipes
    Nat Nano, Vol. 2, No. 2. (February 2007), pp. 87-94.
    by M Whitby, N Quirke
    posted to transport-pore by softsimu on 2008-04-29 17:46:29 as **
  • Water at Hydrophobic Surfaces: Weak Hydrogen Bonding and Strong Orientation Effects
    Science, Vol. 292, No. 5518. (4 May 2001), pp. 908-912.
    by LF Scatena, MG Brown, GL Richmond
    posted to transport-pore by softsimu on 2008-04-29 16:47:44 as **
  • Water and Proton Conduction through Carbon Nanotubes as Models for Biological Channels
    Biophys. J., Vol. 85, No. 1. (1 July 2003), pp. 236-244.
    by Fangqiang Zhu, Klaus Schulten
    posted to transport-pore by softsimu on 2008-04-29 16:42:50 as **
  • Why Are Carbon Nanotubes Fast Transporters of Water?
    Nano Lett., Vol. 8, No. 2. (13 February 2008), pp. 452-458.
    by S Joseph, NR Aluru
    posted to transport-pore by softsimu on 2008-04-29 16:42:14 as **
  • Pressure-driven water infiltration into carbon nanotube: The effect of applied charges
    Applied Physics Letters, Vol. 92, No. 10. (2008)
    by Ling Liu, Yu Qiao, Xi Chen
    posted to transport-pore by softsimu on 2008-04-29 16:40:53 as **
  • Single-file diffusion through inhomogeneous nanopores
    The Journal of Chemical Physics, Vol. 128, No. 11. (2008)
    by Tusar Bandyopadhyay
    posted to transport-pore by softsimu on 2008-04-29 16:39:44 as **
  • Effects of size constraint on water filling process in nanotube
    The Journal of Chemical Physics, Vol. 128, No. 13. (2008)
    by Lingyi Meng, Qikai Li, Zhigang Shuai
    posted to transport-pore by softsimu on 2008-04-29 16:38:24 as **
  • Free Energy Profiles for H+ Conduction along Hydrogen-Bonded Chains of Water Molecules
    Biophys. J., Vol. 75, No. 1. (1 July 1998), pp. 33-40.
    by Regis Pomes, Benoit Roux
    posted to transport-pore by softsimu on 2008-04-29 16:35:01 as **
  • From The Cover: Osmotic water transport through carbon nanotube membranes
    Proceedings of the National Academy of Sciences, Vol. 100, No. 18. (2 September 2003), pp. 10175-10180.
    by Amrit Kalra, Shekhar Garde, Gerhard Hummer
    posted to transport-pore by softsimu on 2008-04-29 16:34:06 as **
  • Water conduction through the hydrophobic channel of a carbon nanotube.
    Nature, Vol. 414, No. 6860. (8 November 2001), pp. 188-190.
    by G Hummer, JC Rasaiah, JP Noworyta
    posted to transport-pore by softsimu on 2008-04-29 16:29:28 as ** along with 3 people and 1 group kentsis ssomani james1 structure-bii
  • Kinetics and Mechanism of Proton Transport across Membrane Nanopores
    Physical Review Letters, Vol. 97, No. 24. (2006)
    by Christoph Dellago, Gerhard Hummer
    posted to transport-pore by softsimu on 2008-04-29 16:28:55 as ** along with 1 person lfatehi
  • Metastable Water Clusters in the Nonpolar Cavities of the Thermostable Protein Tetrabrachion
    J. Am. Chem. Soc., Vol. 129, No. 23. (13 June 2007), pp. 7369-7377.
    by H Yin, G Hummer, JC Rasaiah
    posted to denaturation by softsimu on 2008-04-29 16:26:58 as **
  • Docking Ligands into Flexible and Solvated Macromolecules. 1. Development and Validation of FITTED 1.0
    J. Chem. Inf. Model., Vol. 47, No. 2. (26 March 2007), pp. 435-449.
    by CR Corbeil, P Englebienne, N Moitessier
    posted to docking by softsimu on 2008-04-28 16:27:05 as **
  • The self-organizing map
    Proceedings of the IEEE, Vol. 78, No. 9. (1990), pp. 1464-1480.
    by T Kohonen
    posted to som neural-nets by softsimu on 2008-04-24 21:43:22 as ** along with 6 people and 3 groups thaliana mvoong sjgaller dominikschmidt rodrhern kenji4569 Context-driven-testers Desgin-by-Contract uchile_int_computacional
  • Self-organized formation of topologically correct feature maps
    Biological Cybernetics, Vol. 43, No. 1. (1 January 1982), pp. 59-69.
    by Teuvo Kohonen
    posted to son neural-nets by softsimu on 2008-04-24 21:42:44 as ** along with 1 person natstreet
  • Kohonen map as a visualization tool for the analysis of protein sequences: multiple alignments, domains and segments of secondary structures
    Comput. Appl. Biosci., Vol. 12, No. 6. (1 December 1996), pp. 447-454.
    by Jens Hanke, Jens G Reich
    posted to son neural-nets by softsimu on 2008-04-24 21:40:29 as **
  • How to make large self-organizing maps for nonvectorial data
    Neural Networks, Vol. 15, No. 8-9. ( 2002), pp. 945-952.
    by Teuvo Kohonen, Panu Somervuo
    posted to son neural-nets by softsimu on 2008-04-24 21:39:32 as ** along with 1 person nklee
  • Transcription factor binding site identification using the self-organizing map
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1807-1814.
    by Shaun Mahony, David Hendrix, Aaron Golden, Terry J Smith, Daniel S Rokhsar
    posted to som by softsimu on 2008-04-24 21:38:49 as **
  • Classification of protein families and detection of the determinant residues with an improved self-organizing map
    Biological Cybernetics, Vol. 76, No. 6. (7 July 1997), pp. 441-450.
    by Miguel A Andrade, Georg Casari, Chris Sander, Alfonso Valencia
    posted to som by softsimu on 2008-04-24 21:38:26 as **
  • Local structural motifs of protein backbones are classified by self-organizing neural networks
    Protein Eng., Vol. 9, No. 10. (1 October 1996), pp. 833-842.
    by Johannes Schuchhardt, Gisbert Schneider, Joachim Reichelt, Dietmar Schomburg, Paul Wrede
    posted to som neural-nets by softsimu on 2008-04-24 21:37:14 as **
  • Parallel tempering: Theory, applications, and new perspectives
    Physical Chemistry Chemical Physics, Vol. 7 (2005), pp. 3910-3916.
    by David J Earl, MW Deem
    posted to monte-carlo parallel-tempering by softsimu on 2008-04-16 16:50:04 as **
  • On the use of transition matrix methods with extended ensembles
    The Journal of Chemical Physics, Vol. 124, No. 10. (2006)
    by Fernando A Escobedo, Charlles RA Abreu
    posted to lj-phase by softsimu on 2008-04-16 16:46:52 as **
  • Determination of phase diagrams via computer simulation: methodology and applications to water, electrolytes and proteins
    Journal of Physics: Condensed Matter, Vol. 20, No. 15. (2008), 153101.
    by C Vega, E Sanz, JLF Abascal, EG Noya
    posted to lj-phase by softsimu on 2008-04-16 16:46:05 as **
  • Freezing line of the Lennard-Jones fluid: A phase switch Monte Carlo study
    The Journal of Chemical Physics, Vol. 124, No. 6. (2006)
    by Graham, Nigel B Wilding
    posted to lj-phase by softsimu on 2008-04-16 16:44:28 as **
  • Direct calculation of solid-liquid equilibria from density-of-states Monte Carlo simulations
    The Journal of Chemical Physics, Vol. 122, No. 12. (2005)
    by Ethan A Mastny, Juan J de Pablo
    posted to lj-phase by softsimu on 2008-04-16 16:43:37 as **
  • Melting line of the Lennard-Jones system, infinite size, and full potential
    The Journal of Chemical Physics, Vol. 127, No. 10. (2007)
    by Ethan A Mastny, Juan J de Pablo
    posted to lj-phase by softsimu on 2008-04-16 16:42:43 as **
  • Equilibrium and nonequilibrium molecular dynamics methods for determining solid--liquid phase coexistence at equilibrium
    The Journal of Chemical Physics, Vol. 119, No. 21. (2003), pp. 11017-11023.
    by Jialin Ge, Guang W Wu, BD Todd, Richard J Sadus
    posted to lj-phase by softsimu on 2008-04-16 16:41:56 as **
  • On the active site of proteases. 3. Mapping the active site of papain; specific peptide inhibitors of papain.
    Biochemical and biophysical research communications, Vol. 32, No. 5. (6 September 1968), pp. 898-902.
    by I Schechter, A Berger
    posted to pop s1-specificity by softsimu on 2008-04-14 20:05:06 as **
  • Linking Chemistry and Biology for the Study of Protein Function
    Angewandte Chemie International Edition, Vol. 46, No. 6. (2007), pp. 826-829.
    by Daniel Rauh, Herbert Waldmann
    posted to pop proteins by softsimu on 2008-04-14 18:34:00 as ** along with 1 person tjimenez
  • On the active site of proteases. III. Mapping the active site of papain; specific peptide inhibitors of papain
    Biochemical and Biophysical Research Communications, Vol. 32, No. 5. (6 September 1968), pp. 898-902.
    by Israel Schechter, Arieh Berger
    posted to s1-specificity by softsimu on 2008-04-14 18:31:17 as **
  • Predicting the reactivity of proteins from their sequence alone: Kazal family of protein inhibitors of serine proteinases
    PNAS, Vol. 98, No. 4. (13 February 2001), pp. 1410-1415.
    by Stephen M Lu, Wuyuan Lu, MA Qasim, Stephen Anderson, Izydor Apostol, Wojciech Ardelt, Theresa Bigler, Yi W Chiang, James Cook, Michael N James, Ikunoshin Kato, Clyde Kelly, William Kohr, Tomoko Komiyama, Tiao-Yin Lin, Michio Ogawa, Jacek Otlewski, Soon-Jae Park, Sabiha Qasim, Michael Ranjbar, Misao Tashiro, Nicholas Warne, Harry Whatley, Anna Wieczorek, Maciej Wieczorek, Tadeusz Wilusz, Richard Wynn, Wenlei Zhang, Michael Laskowski
    posted to pop by softsimu on 2008-04-14 18:27:18 as ** along with 1 person apaydin
  • Inhibitors of proteases and amide hydrolases that employ an [alpha]-ketoheterocycle as a key enabling functionality
    Bioorganic & Medicinal Chemistry, Vol. 16, No. 4. (15 February 2008), pp. 1562-1595.
    by Bruce E Maryanoff, Michael J Costanzo
    posted to pop s1-specificity by softsimu on 2008-04-14 18:25:22 as **
  • Novel Inhibitor for Prolyl Tripeptidyl Aminopeptidase from Porphyromonas gingivalis and Details of Substrate-recognition Mechanism
    Journal of Molecular Biology, Vol. 375, No. 3. (18 January 2008), pp. 708-719.
    by Yue Xu, Yoshitaka Nakajima, Kiyoshi Ito, Heng Zheng, Hiroshi Oyama, Ulrich Heiser, Torsten Hoffmann, Ulf-Torsten Gärtner, Hans-Ulrich Demuth, Tadashi Yoshimoto
    posted to pop by softsimu on 2008-04-14 18:23:26 as **
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