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softsimus proteins [60 articles]

Artikler nylig sendt til softsimus bibliotek klassifisert med nøkkelordet proteins. You can also see everyone's proteins.
  • Energy landscape and fluctuations in proteins
    Annalen der Physik, Vol. 9, No. 9-10. (2000), pp. 655-667.
    by H Frauenfelder, BH Mcmahon
    posted to proteins folding by softsimu on 2008-10-02 07:12:40 as **
  • Role of sterol type on lateral pressure profiles of lipid membranes affecting membrane protein functionality: Comparison between cholesterol, desmosterol, 7-dehydrocholesterol and ketosterol
    J. Struct. Biol., Vol. 159 (2007), pp. 311-323.
    by OHS Ollila, T Rog, M Karttunen, I Vattulainen
    posted to proteins lateral-pressure ketosterol file-import-08-10-02 desmosterol cholesterol 7-dehydrocholesterol by softsimu on 2008-10-02 04:25:09 as **
  • Molekulare Nanomaschinen unter der Lupe: Proteindynamik-Simulationen
    Physik in unserer Zeit, Vol. 37, No. 2. (2006), pp. 73-79.
    by Bert L de Groot, Rainer A Böckmann, Helmut Grubmüller
    posted to proteins md enzymes by softsimu on 2008-09-16 09:53:07 as **
  • Full correlation analysis of conformational protein dynamics
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Oliver F Lange, Helmut Grubmüller
    posted to proteins pca md by softsimu on 2008-09-16 09:45:49 as ** along with 4 people and 1 group barry choonpeng sobolevnrm LamBras baker-group
  • Modeling Compact Denatured States of Proteins
    Biochemistry, Vol. 33 (1994), pp. 6158-6166.
    by EE Lattman, KM Fiebig, KA Dill
    posted to denaturation proteins by softsimu on 2008-06-24 22:28:12 as **
  • Stabilization of Proteins in Confined Spaces
    Biochemistry, Vol. 40, No. 38. (25 September 2001), pp. 11289-11293.
    by HX Zhou, KA Dill
    posted to denaturation proteins by softsimu on 2008-06-24 22:26:07 as ** along with 1 person cactus
  • What Drives the Translocation of Proteins?
    Proceedings of the National Academy of Sciences, Vol. 89, No. 9. (1 May 1992), pp. 3770-3774.
    by SM Simon, CS Peskin, GF Oster
    posted to proteins translocation by softsimu on 2008-05-21 23:02:14 as **
  • Linking Chemistry and Biology for the Study of Protein Function
    Angewandte Chemie International Edition, Vol. 46, No. 6. (2007), pp. 826-829.
    by Daniel Rauh, Herbert Waldmann
    posted to pop proteins by softsimu on 2008-04-14 18:34:00 as ** along with 1 person tjimenez
  • Molecular Dynamics Simulations of Rhodopsin in Different One-Component Lipid Bilayers.
    J Phys Chem B (27 May 2007)
    by Arnau Cordomí, Juan J Perez
    posted to nalp proteins rhodopsin by softsimu on 2008-04-11 19:24:39 as ** along with 1 person arnaucordomi
  • Rotation of Structural Water inside a Protein: Calculation of the Rate and Vibrational Entropy of Activation
    J. Phys. Chem. B, Vol. 102, No. 10. (5 March 1998), pp. 1797-1805.
    by S Fischer, CS Verma, RE Hubbard
    posted to d20 proteins water by softsimu on 2008-04-03 21:57:52 as **
  • Lipid-Mediated Interactions between Intrinsic Membrane Proteins: Dependence on Protein Size and Lipid Composition
    Biophys. J., Vol. 81, No. 1. (1 July 2001), pp. 276-284.
    by Patrick Lague, Martin J Zuckermann, Benoit Roux
    posted to proteins by softsimu on 2008-03-18 18:53:18 as ** along with 1 person ARobson
  • Conserved lipid-binding sites in membrane proteins: a focus on cytochrome c oxidase
    Current Opinion in Structural Biology, Vol. 17, No. 4. (August 2007), pp. 444-450.
    by Ling Qin, Martyn A Sharpe, Michael R Garavito, Shelagh Ferguson-Miller
    posted to cytochrome membranes proteins by softsimu on 2008-01-31 15:57:31 as **
  • Convergence of sampling in protein simulations
    Physical Review E, Vol. 65, No. 3. (1 March 2002), 031910.
    by Berk Hess
    posted to molecular proteins by softsimu on 2008-01-30 20:18:58 as **
  • Lipids in membrane protein structures.
    Biochim Biophys Acta, Vol. 1666, No. 1-2. (3 November 2004), pp. 2-18.
    by H Palsdottir, C Hunte
    posted to hdl lipids membranes proteins by softsimu on 2008-01-28 14:44:20 as ** along with 1 person netterpaladin
  • Coarse-grained transmembrane proteins: hydrophobic matching, aggregation, and their effect on fusion.
    J Phys Chem B, Vol. 110, No. 27. (13 July 2006), pp. 13614-13623.
    by AF Smeijers, K Pieterse, AJ Markvoort, PA Hilbers
    posted to coarse-graining proteins by softsimu on 2008-01-24 00:55:25 as **
  • Stability of globular proteins in H<SUB><FONT SIZE='-1'>2</FONT></SUB>O and D<SUB><FONT SIZE='-1'>2</FONT></SUB>O
    Biopolymers, Vol. 85, No. 3. (2007), pp. 264-273.
    by YM Efimova, S Haemers, B Wierczinski, W Norde, AA van Well
    posted to d20 proteins by softsimu on 2008-01-15 20:24:54 as **
  • Solvent isotope effect and protein stability
    Nat Struct Mol Biol, Vol. 2, No. 10. (October 1995), pp. 852-855.
    by George I Makhatadze, Marius G Clore, Angela M Gronenborn
    posted to d20 proteins by softsimu on 2008-01-14 14:08:55 as **
  • Effect of Heavy Water on Protein Flexibility
    Biophys. J., Vol. 82, No. 6. (1 June 2002), pp. 3246-3253.
    by Patrizia Cioni, Giovanni B Strambini
    posted to d20 proteins by softsimu on 2008-01-14 13:25:42 as **
  • Molecular Dynamics of Water at the Protein-Solvent Interface
    J. Phys. Chem. B, Vol. 106, No. 26. (4 July 2002), pp. 6617-6633.
    by AR Bizzarri, S Cannistraro
    posted to proteins water by softsimu on 2008-01-13 22:46:29 as ** along with 3 people rabio ruvido saravan
  • Molecular Dynamics Simulations of Proteins: Can the Explicit Water Model Be Varied?
    J. Chem. Theory Comput., Vol. 3, No. 4. (10 July 2007), pp. 1550-1560.
    by DR Nutt, JC Smith
    posted to proteins water by softsimu on 2008-01-13 22:45:02 as ** along with 2 people onufriev LamBras
  • A Molecular Dynamics Study of the Effect of Ca2+ Removal on Calmodulin Structure
    Biophys. J., Vol. 90, No. 11. (1 June 2006), pp. 3842-3850.
    by Elad Project, Ran Friedman, Esther Nachliel, Menachem Gutman
    posted to calcium ions proteins by softsimu on 2007-12-18 18:32:04 as **
  • Molecular Dynamics of a Protein Surface: Ion-Residues Interactions
    Biophys. J., Vol. 89, No. 2. (1 August 2005), pp. 768-781.
    by Ran Friedman, Esther Nachliel, Menachem Gutman
    posted to ions nacl proteins by softsimu on 2007-12-18 18:29:45 as ** along with 1 person and 1 group sobolevnrm baker-group
  • MD simulations of spontaneous membrane protein/detergent micelle formation.
    J Am Chem Soc, Vol. 126, No. 49. (15 December 2004), pp. 15948-15949.
    by PJ Bond, JM Cuthbertson, SS Deol, MS Sansom
    posted to micelles proteins by softsimu on 2007-12-18 01:38:12 as ** along with 1 person ferin
  • Getting Started in Probabilistic Graphical Models
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e252.
    by Edoardo M Airoldi
    posted to networks proteins by softsimu on 2007-12-13 06:39:37 as ** along with 12 people and 1 group jyuh balicea AbnerCYH stajich cjeans GustavoLacerda GeeSharpMinor sobolevnrm cabbagezs nklee biehl jfr baker-group
  • SMMP v. 3.0 -- Simulating proteins and protein interactions in Python and Fortran
    Computer Physics Communications, Vol. In Press, Accepted Manuscript
    by Jan H Meinke, Sandipan Mohanty, Frank Eisenmenger, Ulrich H Hansmann
    posted to fortran molecular-simulation proteins python by softsimu on 2007-12-13 06:34:50 as **
  • Proton pathways and H<SUP><FONT SIZE='-1'>+</FONT></SUP>/Cl<SUP><FONT SIZE='-1'>-</FONT></SUP> stoichiometry in bacterial chloride transporters
    Proteins: Structure, Function, and Bioinformatics, Vol. 68, No. 1. (2007), pp. 26-33.
    by Zhifeng Kuang, Uma Mahankali, Thomas L Beck
    posted to abf free-energy ions proteins by softsimu on 2007-12-12 23:13:10 as **
  • Lateral Diffusion of Proteins in the Plasma Membrane: Spatial Tessellation and Percolation Theory
    J. Phys. Chem. B (11 December 2007)
    by BJ Sung, A Yethiraj
    posted to diffusion membranes percolation proteins voronoi by softsimu on 2007-12-12 00:28:09 as ** along with 1 person paulschlesinger
  • Computational protein design: Software implementation, parameter optimization, and performance of a simple model
    Journal of Computational Chemistry, Vol. 9999, No. 9999. (2007), NA.
    by Marcel, Anne Lopes, David Mignon, Thomas Simonson
    posted to proteins by softsimu on 2007-12-12 00:26:03 as ** along with 1 person emidio_capriotti
  • Characterization of Cell-penetrating peptide-mediated peptide delivery
    British Journal of Pharmacology, Vol. 145 (June 2005), pp. 1093-1102.
    by Simon W Jones, Richard Christison, Ken Bundell, Catherine J Voyce, Sarah MV Brockbank, Peter Newham, Mark A Lindsay
    posted to proteins antennapedia bibtex-import domain polyargenine tat transduction transportan by softsimu on 2007-12-11 21:32:12 as read
  • Emergence of Preferred Structures in a Simple Model of Protein Folding
    Science, Vol. 273 (Aug. 1996), pp. 666-669.
    by H Li, R Helling, C Tang, N Wingreen
    posted to bibtex-import designability proteins by softsimu on 2007-12-11 21:32:05 as read
  • Importance of explicit salt ions for protein stability in molecular dynamics simulation
    Biophys. J., Vol. 74 (1998), pp. 2906-2911.
    by GT Ibragimova, RC Wade
    posted to bibtex-import membranes proteins salt by softsimu on 2007-12-11 21:31:41 as read
  • Dynamics of folded proteins
    Nature, Vol. 267 (1977), pp. 585-590.
    by JA Mccammon, BR Gelin, M Karplus
    posted to bibtex-import folding proteins by softsimu on 2007-12-11 21:31:36 as read
  • Electrostatics and dynamics of proteins
    Rep. Prog. Phys., Vol. 66 (2003), pp. 737-787.
    by T Simonson
    posted to bibtex-import electrostatics proteins review by softsimu on 2007-12-11 21:31:28 as read
  • Cholesterol-Induced Protein Sorting: An Analysis of Energetic Feasibility
    Biophys. J., Vol. 84 (2003), pp. 2080-2089.
    by JA Lundb\aek, OS Andersen, T Werge, C Nielsen
    posted to bibtex-import cholesterol lateral pressure proteins by softsimu on 2007-12-11 21:31:27 as read
  • Elastic coupling of integral membrane protein stability to lipid bilayer forces
    Proc. Nat. Acad. Sci., Vol. 101 (2004), pp. 4065-4070.
    by HD Hong, LK Tamm
    posted to bibtex-import lateral membranes pressure proteins by softsimu on 2007-12-11 21:31:26 as read
  • How lipids affect the activities of integral membrane proteins
    Biochim. Biophys. Acta, Vol. 1666 (2004), pp. 62-87.
    by Anthony G Lee
    posted to bibtex-import channels lateral lipids membranes pores pressure proteins review by softsimu on 2007-12-11 21:31:26 as read
  • Intermediate States in Protein Folding
    J. Mol. Biol., Vol. 258 (1996), pp. 707-725.
    by Peter L Privalov
    posted to bibtex-import proteins by softsimu on 2007-12-11 21:31:25 as read
  • On hydrophobicity correlations in protein chains
    Biophys. J., Vol. 79 (2000), pp. 2252-2258.
    by A Irbäck, E Sandelin
    posted to bibtex-import folding hydrophobines peptides proteins by softsimu on 2007-12-11 21:31:25 as read
  • Biomimetism and bioinspiration as tools for the design of innovative materials and systems
    Nature Materials, Vol. 4 (2005), pp. 277-288.
    by C Sanchez, H Arribart, Giraud
    posted to bibtex-import materials proteins by softsimu on 2007-12-11 21:31:06 as read
  • Structure determination of micelle-like intermediates in amyloid $β$-protein fibril assembly by using small angle neutron scattering
    Proc. Natl. Acad. Sci, Vol. 99 (2001), pp. 150-154.
    by Winnie Yong, Aleksey Lomakin, Marina D Kirkitadze, David B Teplow, Sow H Chen, George B Benedek
    posted to micelles alzheimers amyloid bibtex-import proteins by softsimu on 2007-12-11 21:31:01 as read
  • Secondary structure and interfacial aggregation of amyloid-beta(1-40) on sodium dodecyl sulfate micelles
    Biochemistry, Vol. 45 (2006), pp. 8639-8648.
    by Vijayaraghavan Rangachari, Dana K Reed, Brenda D Moore, Terrone L Rosenberry
    posted to micelles alzheimers amyloid bibtex-import proteins sds by softsimu on 2007-12-11 21:31:01 as read
  • Formation of Protein Micelles from Amphiphilic Membrane Proteins
    Proc. Natl. Acad. Sci, Vol. 75 (1978), pp. 5306-5310.
    by K Simons, A Helenius, K Leonard, M Sarvas, MJ Gething
    posted to micelles proteins bibtex-import peptide by softsimu on 2007-12-11 21:31:01 as read
  • OPM: Orientations of Proteins in Membranes database
    Bioinformatics, Vol. 22 (2006), pp. 623-625.
    by Mikhail A Lomize, Andrei L Lomize, Irina D Pogozheva, Henry I Mosberg
    posted to bibtex-import nalp proteins by softsimu on 2007-12-11 21:31:00 as read
  • Stoichiometry of lipid interactions with transmembrane proteins--Deduced from the 3D structures
    Protein Sci., Vol. 15 (2006), pp. 1153-1161.
    by T Pali, D Bashtovyy, D Marsh
    posted to bibtex-import nalp proteins by softsimu on 2007-12-11 21:31:00 as read
  • Positioning of proteins in membranes: A computational approach
    Protein Sci., Vol. 15 (2006), pp. 1318-1333.
    by AL Lomize, ID Pogozheva, MA Lomize, HI Mosberg
    posted to bibtex-import nalp proteins by softsimu on 2007-12-11 21:31:00 as read
  • Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
    Biopolymers, Vol. 22 (1983), pp. 2577-2637.
    by W Kabsch, C Sander
    posted to bibtex-import dssp nalp proteins whatif by softsimu on 2007-12-11 21:31:00 as read
  • Lipids do influence protein function---the hydrophobic matching hypothesis revisited
    Biochim. Biohys. Acta, Vol. 1666 (2006), pp. 205-226.
    by Morten, Ole G Mouritsen
    posted to bibtex-import hydrophobicty nalp proteins by softsimu on 2007-12-11 21:31:00 as read along with 1 person easybakemuffin
  • Virulence Functions of Autotransporter Proteins
    Infect. Immun., Vol. 69 (2001), pp. 1231-1243.
    by Ian R Henderson, James P Nataro
    posted to bibtex-import nalp proteins by softsimu on 2007-12-11 21:31:00 as read
  • Autotransporter proteins, evolution and redefining protein secretion
    Trends Microbiol., Vol. 8 (2000), pp. 529-532.
    by IR Henderson, R Cappello, JP Nataro
    posted to bibtex-import nalp proteins by softsimu on 2007-12-11 21:31:00 as read
  • Structure and function of bacterial outer membrane proteins: barrels in a nutshell
    Mol. Microbiol., Vol. 37 (2000), pp. 239-253.
    by Ralf Koebnik, KP Locher, P van Gelder
    posted to nalp proteins by softsimu on 2007-12-11 21:31:00 as read
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