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vegas library [45 articles]

Nye artikler sendt til vegas bibliotek.
  • Dynamic Regulation of Nucleosome Positioning in the Human Genome
    Cell, Vol. 132, No. 5. (7 March 2008), pp. 887-898.
    by Dustin E Schones, Kairong Cui, Suresh Cuddapah, Tae-Young Roh, Artem Barski, Zhibin Wang, Gang Wei, Keji Zhao
    posted to sonication sequencing nucleosome epigenetic chromatin bioinformatics by vega on 2008-06-30 15:16:33 as ** along with 7 people mikaelhuss sameetmehta aalibes dchughes sleepingcell idonaldson oelemento
  • An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)
    Genome Res. (24 June 2008), gr.077479.108.
    by Vardhman Rakyan, Thomas Down, Natalie Thorne, Paul Flicek, Eugene Kulesha, Stefan Graf, Eleni Tomazou, Liselotte Backdahl, Nathan Johnson, Marils Herberth, Kevin Howe, David Jackson, Marcos Miretti, Heike Fiegler, John Marioni, Ewan Birney, Tim Hubbard, Nigel Carter, Simon Tavare, Stephan Beck
    posted to methylation histone chromatin chip bioinformatics by vega on 2008-06-30 15:15:46 as ** along with 1 person rschulz
  • Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
    Nature (07 May 2008)
    by Lars Guelen, Ludo Pagie, Emilie Brasset, Wouter Meuleman, Marius B Faza, Wendy Talhout, Bert H Eussen, Annelies de Klein, Lodewyk Wessels, Wouter de Laat, Bas van Steensel
    posted to nucleosome epigenetic chromatin by vega on 2008-06-20 06:22:00 as ** along with 1 person rschulz
  • Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer.
    PLoS computational biology, Vol. 4, No. 4. (April 2008)
    by A Bashir, S Volik, C Collins, V Bafna, BJ Raphael
    posted to sequencing paired-end bioinformatics by vega on 2008-06-19 08:27:17 as **
  • Translational and rotational settings of H2A.Z nucleosomes across the Saccharomycescerevisiae genome
    Nature, Vol. 446, No. 7135., pp. 572-576.
    by Istvan Albert, Travis N Mavrich, Lynn P Tomsho, Ji Qi, Sara J Zanton, Stephan C Schuster, Franklin B Pugh
    posted to nucleosome histone epigenetic chromatin bioinformatics by vega on 2008-06-18 09:56:38 as ** along with 2 people and 1 group cwbrown lusk EisenLab
  • Dynamic Remodeling of Individual Nucleosomes Across a Eukaryotic Genome in Response to Transcriptional Perturbation
    PLoS Biology, Vol. 6, No. 3. (1 March 2008), e65.
    by Sushma Shivaswamy, Akshay Bhinge, Yongjun Zhao, Steven Jones, Martin Hirst, Vishwanath R Iyer
    posted to nucleosome histone epigenetic chromatin bioinformatics by vega on 2008-06-18 09:40:47 as ** along with 2 people djkt lusk
  • DNA Immunoprecipitation (DIP) for the Determination of DNA-Binding Specificity
    Cold Spring Harbor Protocols, Vol. 2008, No. 4. (1 March 2008), pdb.prot4972.
    by Andrea J Gossett, Jason D Lieb
    posted to tfbs chromatin by vega on 2008-06-18 09:40:17 as ** along with 2 people jyuh dacrotty
  • ChIP-Seq Data Reveal Nucleosome Architecture of Human Promoters
    Cell, Vol. 131, No. 5. (30 November 2007), pp. 831-832.
    by Christoph D Schmid, Philipp Bucher
    posted to nucleosome histone chromatin bioinformatics by vega on 2008-06-18 09:31:20 as ** along with 1 person mikaelhuss
  • Model-based deconvolution of genome-wide DNA binding.
    Bioinformatics (1 December 2007)
    by David J J Reiss, Marc T T Facciotti, Nitin S S Baliga
    posted to nucleosome histone bioinformatics by vega on 2008-06-18 09:25:24 as ** along with 5 people isimpson jyuh djkt idonaldson yevishere
  • DNA physical properties determine nucleosome occupancy from yeast to fly
    Nucl. Acids Res. (17 May 2008), gkn262.
    by Vincent Miele, Cedric Vaillant, Yves D'aubenton-Carafa, Claude Thermes, Thierry Grange
    posted to nucleosome histone epigenetic bioinformatics by vega on 2008-06-18 09:20:28 as ** along with 1 person aalibes
  • Two strategies for gene regulation by promoter nucleosomes
    Genome Res. (30 April 2008), gr.076059.108.
    by Itay Tirosh, Naama Barkai
    posted to epigenetic nucleosome histone bioinformatics by vega on 2008-06-13 04:09:12 as *** along with 7 people dchughes aalibes djkt fpattyn emptyhb roys nklee
  • RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
    Genome Res. (11 June 2008), gr.079558.108.
    by John Marioni, Cristopher Mason, Shrikant Mane, Matthew Stephens, Yoav Gilad
    posted to sequencing rna_seq gene_expression bioinformatics by vega on 2008-06-13 04:09:01 as *** along with 9 people and 1 group caseybrown vmarshal lusk fpattyn ela503 semrich balicea giovanni stajich Berkeley Mycology
  • A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning
    Genome Res. (13 May 2008), gr.076463.108.
    by Anton Valouev, Jeffrey Ichikawa, Thaisan Tonthat, Jeremy Stuart, Swati Ranade, Heather Peckham, Kathy Zeng, Joel A Malek, Gina Costa, Kevin Mckernan, Arend Sidow, Andrew Fire, Steven M Johnson
    posted to histone epigenetic chromatin bioinformatics by vega on 2008-06-13 04:07:54 as ** along with 5 people and 1 group caseybrown aalibes Stew dpollard maximilianh RockmanLab
  • A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
    Genome Res. (12 June 2008), gr.078261.108.
    by Travis N Mavrich, Ilya P Ioshikhes, Bryan J Venters, Cizhong Jiang, Lynn P Tomsho, Ji Qi, Stephan C Schuster, Istvan Albert, Franklin B Pugh
    posted to histone epigenetic chromatin bioinformatics by vega on 2008-06-13 04:06:08 as *** along with 1 person aalibes
  • A Nuclear Receptor Atlas: 3T3-L1 Adipogenesis
    Mol Endocrinol, Vol. 19, No. 10. (1 October 2005), pp. 2437-2450.
    by Mingui Fu, Tingwan Sun, Angie L Bookout, Michael Downes, Ruth T Yu, Ronald M Evans, David J Mangelsdorf
    posted to transcription-factor rxr pparg adipogenesis by vega on 2008-05-24 07:38:04 as **
  • notes A Hierarchical Network Controls Protein Translation during Murine Embryonic Stem Cell Self-Renewal and Differentiation
    Cell Stem Cell, Vol. 2 (8 May 2008), pp. 448-460.
    by Prabha Sampath, David K Pritchard, Lil Pabon, Hans Reinecke, Stephen M Schwartz, David R Morris, Charles E Murry
    posted to stem-cell normalization microarray by vega on 2008-05-15 10:52:03 as **
  • An intact histone 3'-processing site is required for transcription termination in a mouse histone H2a gene.
    Molecular and cellular biology, Vol. 11, No. 1. (January 1991), pp. 497-509.
    by N Chodchoy, NB Pandey, WF Marzluff
    posted to transcription-termination histone epigenetic chromatin by vega on 2008-05-15 10:27:58 as **
  • 3' Processing and termination of mouse histone transcripts synthesized in vitro by RNA polymerase II
    Nucl. Acids Res., Vol. 24, No. 19. (1 October 1996), pp. 3797-3805.
    by X Gu, WF Marzluff
    posted to transcription-termination histone epigenetic chromatin by vega on 2008-05-15 09:32:11 as **
  • Transcription termination and 3' processing: the end is in site!
    Cell, Vol. 41, No. 2. (June 1985), pp. 349-359.
    by ML Birnstiel, M Busslinger, K Strub
    posted to transcription-termination epigenetic chromatin by vega on 2008-05-15 09:30:17 as **
  • The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II.
    Nature, Vol. 432, No. 7016. (25 November 2004), pp. 517-522.
    by M Kim, NJ Krogan, L Vasiljeva, OJ Rando, E Nedea, JF Greenblatt, S Buratowski
    posted to transcription-termination epigenetic chromatin by vega on 2008-05-15 09:25:39 as **
  • Human 5' --> 3' exonuclease Xrn2 promotes transcription termination at co-transcriptional cleavage sites.
    Nature, Vol. 432, No. 7016. (25 November 2004), pp. 522-525.
    by S West, N Gromak, NJ Proudfoot
    posted to transcription-termination epigenetic chromatin by vega on 2008-05-15 09:22:57 as ** along with 1 person lesander
  • Autocatalytic RNA cleavage in the human [beta]-globin pre-mRNA promotes transcription termination
    Nature, Vol. 432, No. 7016. (25 November 2004), pp. 526-530.
    by Alexandre Teixeira, Abdessamad Tahiri-Alaoui, Steve West, Benjamin Thomas, Aroul Ramadass, Igor Martianov, Mick Dye, William James, Nick J Proudfoot, Alexandre Akoulitchev
    posted to transcription-termination epigenetic chromatin by vega on 2008-05-15 09:22:00 as **
  • Chromatin structure and evolution in the human genome
    BMC Evolutionary Biology, Vol. 7 (09 May 2007), 72.
    by James GD Prendergast, Harry Campbell, Nick Gilbert, Malcolm G Dunlop, Wendy A Bickmore, Colin AM Semple
    posted to evolution chromatin by vega on 2008-04-25 06:32:30 as **
  • Easy detection of chromatin binding proteins by the histone association assay
    Biological Procedures Online, Vol. 7 (2005), pp. 60-69.
    by Robin Ricke, Anja-Katrin Bielinsky
    posted to sonication chromatin by vega on 2008-04-25 03:01:44 as **
  • Chromatin immunoprecipitation: optimization, quantitative analysis and data normalization
    Plant Methods, Vol. 3 (24 September 2007), 11.
    by Max Haring, Sascha Offermann, Tanja Danker, Ina Horst, Christoph Peterhaensel, Maike Stam
    posted to sonication chip by vega on 2008-04-24 10:24:33 as read along with 2 people kengg jyuh
  • Epigenetic profiling of multidrug-resistant human MCF-7 breast adenocarcinoma cells reveals novel hyper- and hypomethylated targets
    Mol Cancer Ther, Vol. 6, No. 3. (1 March 2007), pp. 1089-1098.
    by Vasyl' F Chekhun, Nataliya Y Lukyanova, Olga Kovalchuk, Volodymyr P Tryndyak, Igor P Pogribny
    posted to mcf-7 histone epigenetic by vega on 2008-04-24 06:16:12 as **
  • Genome-wide H3K9 histone acetylation profiles are altered in benzopyrene treated MCF7 breast cancer cells
    J. Biol. Chem. (7 December 2007), M707506200.
    by Bekim Sadikovic, Joseph Andrews, David Carter, John Robinson, David I Rodenhiser
    posted to histone epigenetic by vega on 2008-04-24 05:26:49 as ** along with 1 person epigenetics
  • Coordinated Changes in DNA Methylation and Histone Modifications Regulate Silencing/Derepression of Luteinizing Hormone Receptor Gene Transcription
    Mol. Cell. Biol., Vol. 25, No. 18. (15 September 2005), pp. 7929-7939.
    by Ying Zhang, Naheed Fatima, Maria L Dufau
    posted to histone epigenetic by vega on 2008-04-24 05:18:23 as **
  • Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
    Nature (01 July 2007)
    by Tarjei S Mikkelsen, Manching Ku, David B Jaffe, Biju Issac, Erez Lieberman, Georgia Giannoukos, Pablo Alvarez, William Brockman, Tae-Kyung Kim, Richard P Koche, William Lee, Eric Mendenhall, Aisling O’donovan, Aviva Presser, Carsten Russ, Xiaohui Xie, Alexander Meissner, Marius Wernig, Rudolf Jaenisch, Chad Nusbaum, Eric S Lander, Bradley E Bernstein
    posted to chromatin by vega on 2008-04-22 10:22:29 as ** along with 12 people and 1 group jyuh brant dchughes kengg vplagnol olympos epigenetics bioyang cabbagezs rschulz inesdesantiago slevy03 EisenLab
  • Genome-wide approaches to studying chromatin modifications
    Nat Rev Genet, Vol. 9, No. 3. (March 2008), pp. 179-191.
    by Dustin E Schones, Keji Zhao
    posted to chip chromatin review survey by vega on 2008-04-07 08:15:29 as ** along with 7 people jyuh tmmurali dchughes zwang cabbagezs idonaldson faion
  • EPIGENOMICS: BEYOND CPG ISLANDS
    Nat Rev Genet, Vol. 5, No. 6. (June 2004), pp. 446-455.
    by Melissa J Fazzari, John M Greally
    posted to chromatin by vega on 2008-04-07 08:09:18 as ** along with 2 people rdiaz olympos
  • Cyclical DNA methylation of a transcriptionally active promoter
    Nature, Vol. 452, No. 7183. (6 March 2008), pp. 45-50.
    by Raphael Metivier, Rozenn Gallais, Christophe Tiffoche, Christine Le Peron, Renata Z Jurkowska, Richard P Carmouche, David Ibberson, Peter Barath, Florence Demay, George Reid, Vladimir Benes, Albert Jeltsch, Frank Gannon, Gilles Salbert
    posted to chromatin tfbs by vega on 2008-03-06 10:38:31 as ** along with 3 people djkt epigenetics clearbluespring
  • Transient cyclical methylation of promoter DNA
    Nature, Vol. 452, No. 7183. (6 March 2008), pp. 112-115.
    by Sara Kangaspeska, Brenda Stride, Raphael Metivier, Maria Polycarpou-Schwarz, David Ibberson, Richard P Carmouche, Vladimir Benes, Frank Gannon, George Reid
    posted to chromatin tfbs by vega on 2008-03-06 10:38:18 as ** along with 4 people djkt maximilianh clearbluespring dunnp
  • High-throughput mapping of the chromatin structure of human promoters
    Nat Biotech, Vol. 25, No. 2. (February 2007), pp. 244-248.
    by Fatih Ozsolak, Jun S Song, Shirley X Liu, David E Fisher
    posted to chromatin tfbs by vega on 2008-03-03 02:15:19 as ** along with 5 people and 2 groups jyuh aalibes jfr dchughes ccr G4ID Genetics-of-Gambling
  • Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing.
    Nat Methods (11 June 2007)
    by Gordon Robertson, Martin Hirst, Matthew Bainbridge, Misha Bilenky, Yongjun Zhao, Thomas Zeng, Ghia Euskirchen, Bridget Bernier, Richard Varhol, Allen Delaney, Nina Thiessen, Obi L L Griffith, Ann He, Marco Marra, Michael Snyder, Steven Jones
    posted to bioinformatics chip tfbs by vega on 2008-02-07 03:01:09 as read along with 4 people and 1 group slevy03 jyuh kengg ghattem Plantandetc
  • Parameter Estimation for the Exponential-Normal Convolution Model for Background Correction of Affymetrix GeneChip Data
    Statistical Applications in Genetics and Molecular Biology, Vol. 5, No. 1. (2007), 24.
    by Monnie, Zhongxue
    posted to bioinformatics microarray modeling by vega on 2008-01-28 11:56:41 as **
  • Whole-genome cartography of estrogen receptor alpha binding sites.
    PLoS Genetics, Vol. 3, No. 6. (June 2007)
    by CY Lin, VB Vega, JS Thomsen, T Zhang, SL Kong, M Xie, KP Chiu, L Lipovich, DH Barnett, F Stossi, A Yeo, J George, VA Kuznetsov, YK Lee, TH Charn, N Palanisamy, LD Miller, E Cheung, BS Katzenellenbogen, Y Ruan, G Bourque, CL Wei, ET Liu
    posted to no-tag by vega on 2008-01-08 03:42:04 as read along with 2 people and 1 group jfr cisevol cis-regulatory-evolution
  • Comprehensive copy number profiles of breast cancer cell model genomes.
    Breast Cancer Res, Vol. 8, No. 1. (2006)
    by A Shadeo, WL Lam
    posted to no-tag by vega on 2008-01-08 03:25:45 as read along with 2 people rdiaz pjasper
  • The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells
    Nature Genetics, Vol. 38, No. 4. (05 March 2006), pp. 431-440.
    by Yuin-Han Loh, Qiang Wu, Joon-Lin Chew, Vinsensius B Vega, Weiwei Zhang, Xi Chen, Guillaume Bourque, Joshy George, Bernard Leong, Jun Liu, Kee-Yew Wong, Ken W Sung, Charlie WH Lee, Xiao-Dong Zhao, Kuo-Ping Chiu, Leonard Lipovich, Vladimir A Kuznetsov, Paul Robson, Lawrence W Stanton, Chia-Lin Wei, Yijun Ruan, Bing Lim, Huck-Hui Ng
    posted to no-tag by vega on 2008-01-08 03:23:04 as read along with 9 people MllePapillon jyuh cmmorel gpalidwor brixtonmc eukfn mikaelhuss idonaldson tdmckee
  • A global map of p53 transcription-factor binding sites in the human genome.
    Cell, Vol. 124, No. 1. (13 January 2006), pp. 207-219.
    by CL Wei, Q Wu, VB Vega, KP Chiu, P Ng, T Zhang, A Shahab, HC Yong, Y Fu, Z Weng, J Liu, XD Zhao, JL Chew, YL Lee, VA Kuznetsov, WK Sung, LD Miller, B Lim, ET Liu, Q Yu, HH Ng, Y Ruan
    posted to no-tag by vega on 2008-01-08 03:20:58 as read along with 9 people and 1 group maralena kaarsinogen jfr balajis tabu kengg jackjackjjj jtomasch karfunkel Plantandetc
  • Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping
    Genes Dev., Vol. 19, No. 5. (1 March 2005), pp. 542-552.
    by Tae-Young Roh, Suresh Cuddapah, Keji Zhao
    posted to no-tag by vega on 2008-01-08 03:17:09 as **
  • Identification of the mismatch repair genes PMS2 and MLH1 as p53 target genes by using serial analysis of binding elements
    Proceedings of the National Academy of Sciences, Vol. 102, No. 13. (29 March 2005), pp. 4813-4818.
    by Jiguo Chen, Ivan Sadowski
    posted to no-tag by vega on 2008-01-08 03:14:17 as **
  • Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment
    Nature Methods, Vol. 2, No. 1. (21 December 2004), 47.
    by Jonghwan Kim, Akshay A Bhinge, Xochitl C Morgan, Vishwanath R Iyer
    posted to chip by vega on 2008-01-08 03:08:17 as **
  • A Chromatin Immunoprecipitation Screen Reveals Protein Kinase Cbeta as a Direct RUNX1 Target Gene
    J. Biol. Chem., Vol. 279, No. 2. (9 January 2004), pp. 825-830.
    by Bruce A Hug, Nazia Ahmed, Jonathan A Robbins, Mitchell A Lazar
    posted to chip by vega on 2008-01-08 03:01:28 as **
  • A systematic model to predict transcriptional regulatory mechanisms based on overrepresentation of transcription factor binding profiles.
    Genome Res, Vol. 16, No. 3. (March 2006), pp. 405-413.
    by LW Chang, R Nagarajan, JA Magee, J Milbrandt, GD Stormo
    posted to modules motif tfbs by vega on 2006-05-15 10:17:05 as *** along with 3 people ihpark jfr johncumbers
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