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winterschlaefers library [53 articles]

Nye artikler sendt til winterschlaefers bibliotek.
  • Structural templates predict novel protein interactions and targets from pancreas tumour gene expression data.
    Bioinformatics, Vol. 23, No. 13. (1 July 2007)
    by G Dawelbait, C Winter, Y Zhang, C Pilarsky, R Grützmann, JC Heinrich, M Schroeder
    posted to structure microarray cancer by winterschlaefer on 2008-07-17 10:53:56 as read along with 2 people bicko chad_davis
  • Antibody targeting studies in a transgenic murine model of spontaneous colorectal tumors.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 18. (28 August 2001), pp. 10256-10260.
    by RW Wilkinson, EL Ross, R Poulsom, M Ilyas, J Straub, D Snary, WF Bodmer, SJ Mather
    posted to tumor-marker prediction cea cancer by winterschlaefer on 2008-07-08 13:55:50 as **
  • Prediction error estimation: a comparison of resampling methods
    Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3301-3307.
    by Annette M Molinaro, Richard Simon, Ruth M Pfeiffer
    posted to validation prediction by winterschlaefer on 2008-07-08 12:01:42 as ** along with 1 person and 1 group caporaso biomedical-nlp
  • Prediction of cancer outcome with microarrays: a multiple random validation strategy.
    Lancet, Vol. 365, No. 9458. (5 February 2005), pp. 488-492.
    by S Michiels, S Koscielny, C Hill
    posted to predictor microarray cancer by winterschlaefer on 2008-07-02 14:55:55 as ** along with 5 people and 1 group setar textoris jfr chad_davis giovanni GeschwindLab
  • Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer.
    Science, Vol. 310, No. 5748. (28 October 2005), pp. 644-648.
    by SA Tomlins, DR Rhodes, S Perner, SM Dhanasekaran, R Mehra, XW Sun, S Varambally, X Cao, J Tchinda, R Kuefer, C Lee, JE Montie, RB Shah, KJ Pienta, MA Rubin, AM Chinnaiyan
    posted to no-tag by winterschlaefer on 2008-06-30 15:27:25 as ** along with 5 people oelemento kentsis jfr tuck emb51
  • Active caspase-1 is a regulator of unconventional protein secretion.
    Cell, Vol. 132, No. 5. (7 March 2008), pp. 818-831.
    by M Keller, A Rüegg, S Werner, HD Beer
    posted to caspase by winterschlaefer on 2008-06-10 09:32:47 as **
  • Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer.
    Lancet, Vol. 365, No. 9460. (5 2005), pp. 671-679.
    by Y Wang, JG Klijn, Y Zhang, AM Sieuwerts, MP Look, F Yang, D Talantov, M Timmermans, ME Meijer-van Gelder, J Yu, T Jatkoe, EM Berns, D Atkins, JA Foekens
    posted to microarray cancer by winterschlaefer on 2008-06-09 16:32:02 as read along with 6 people and 2 groups giovenko jfr tuck giovanni frohike cberry Bioinformatics GeschwindLab
  • Outcome signature genes in breast cancer: is there a unique set?
    Bioinformatics, Vol. 21, No. 2. (2005), pp. 171-178.
    by Liat Ein-Dor, Itai Kela, Gad Getz, David Givol, Eytan Domany
    posted to microarray cancer by winterschlaefer on 2008-06-09 16:24:56 as ** along with 2 people and 1 group frohike fishtank Bioinformatics
  • A gene expression signature that can predict the recurrence of tamoxifen-treated primary breast cancer.
    Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 6. (15 March 2008), pp. 1744-1752.
    by M Chanrion, V Negre, H Fontaine, N Salvetat, F Bibeau, G Mac Grogan, L Mauriac, D Katsaros, F Molina, C Theillet, JM Darbon
    posted to statistics microarray cancer by winterschlaefer on 2008-06-03 07:22:33 as **
  • Profiling studies in ovarian cancer: a review.
    Oncologist, Vol. 12, No. 8. (August 2007), pp. 960-966.
    by RS Fehrmann, XY Li, AG van der Zee, S de Jong, GJ Te Meerman, EG de Vries, AP Crijns
    posted to microarray cancer by winterschlaefer on 2008-06-03 07:20:41 as ** along with 1 person jfr
  • Reconstruction of genetic association networks from microarray data: A partial least squares approach.
    Bioinformatics (18 January 2008)
    by Vasyl Pihur, Somnath Datta, Susmita Datta
    posted to statistics microarray by winterschlaefer on 2008-06-03 07:18:27 as ** along with 6 people jyuh cannin jfr shigepong aconesa sotacam
  • Predictors of primary breast cancers responsiveness to preoperative epirubicin/cyclophosphamide-based chemotherapy: translation of microarray data into clinically useful predictive signatures.
    J Transl Med, Vol. 3 (9 August 2005)
    by O Modlich, HB Prisack, M Munnes, W Audretsch, H Bojar
    posted to statistics plsr microarray cancer by winterschlaefer on 2008-06-03 06:56:57 as ** along with 1 person jfr
  • Partial least squares proportional hazard regression for application to DNA microarray survival data
    Bioinformatics, Vol. 18, No. 12. (1 December 2002), pp. 1625-1632.
    by Danh V Nguyen, David M Rocke
    posted to statistics plsr microarray cancer by winterschlaefer on 2008-06-03 06:52:06 as ** along with 1 person rdiaz
  • Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e178.
    by Ramon Aragues, Andrej Sali, Jaume Bonet, Marc A Marti-Renom, Baldo Oliva
    posted to ppi motif hubs by winterschlaefer on 2008-05-11 12:17:02 as ** along with 2 people Ema zwang
  • Principles of Protein-Protein Interactions: What are the Preferred Ways For Proteins To Interact?
    Chem. Rev. (21 March 2008)
    by O Keskin, A Gursoy, B Ma, R Nussinov
    posted to ppi by winterschlaefer on 2008-05-09 12:32:53 as ** along with 4 people and 1 group higueruelo GermanErlenkamp allmensch jmrivort Supramolecular
  • State of the nation in data integration for bioinformatics.
    J Biomed Inform (5 February 2008)
    by Carole Goble, Robert Stevens
    posted to integration data by winterschlaefer on 2008-05-08 15:32:11 as ** along with 4 people dansullivanblk alanrw dullhunk cjhall
  • Green Fluorescent Protein Functions as a Reporter for Protein Localization in Escherichia coli
    J. Bacteriol., Vol. 182, No. 14. (15 July 2000), pp. 4068-4076.
    by Bradley J Feilmeier, Ginger Iseminger, Diane Schroeder, Hannali Webber, Gregory J Phillips
    posted to gfp by winterschlaefer on 2008-04-28 11:20:13 as **
  • Improperly folded green fluorescent protein is secreted via a non-classical pathway
    J Cell Sci, Vol. 115, No. 19. (1 October 2002), pp. 3849-3857.
    by Marcel Tanudji, Sarah Hevi, Steven L Chuck
    posted to gfp by winterschlaefer on 2008-04-28 11:19:46 as **
  • Revolutions in RNA Secondary Structure Prediction
    Journal of Molecular Biology, Vol. 359, No. 3. (9 June 2006), pp. 526-532.
    by David H Mathews
    posted to rna prediction by winterschlaefer on 2008-04-27 13:09:53 as ** along with 9 people and 2 groups austin marcius arcticrasta penka Eonwe cthachuk emidio_capriotti physics maralena BioinfoCIPF SGU-CIPF
  • Structure-Templated Predictions of Novel Protein Interactions from Sequence Information
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e182.
    by Doron Betel, Kevin E Breitkreuz, Ruth Isserlin, Danielle Dewar-Darch, Mike Tyers, Christopher W Hogue
    posted to structure prediction ppi by winterschlaefer on 2008-04-24 13:46:44 as ** along with 2 people cjeans zwang
  • Error bars in experimental biology
    J. Cell Biol., Vol. 177, No. 1. (9 April 2007), pp. 7-11.
    by Geoff Cumming, Fiona Fidler, David L Vaux
    posted to statistics by winterschlaefer on 2008-04-21 17:54:09 as read along with 32 people and 5 groups mjoach arindrartow jyuh brian ana batallah manduca kuhn Borelli dayjm kristina chad_davis tny dullhunk rabu lechristophe nelmor jdelcampo fishtank emmahe lisa1 Daria_G devender bmaust cabbagezs natstreet krokicki loopback007 wilbur tdmckee renatomilani delenca structural_bioinformatics Bioinformatics VisionLab FlowCytometry Microbial-Ecology
  • Proteomic, Functional, and Domain-Based Analysis of In Vivo 14-3-3 Binding Proteins Involved in Cytoskeletal Regulation and Cellular Organization
    Current Biology, Vol. 14, No. 16. (24 August 2004), pp. 1436-1450.
    by Jing Jin, Donelson F Smith, Chris Stark, Clark D Wells, James P Fawcett, Sarang Kulkarni, Pavel Metalnikov, Paul O'Donnell, Paul Taylor, Lorne Taylor
    posted to 14-3-3 by winterschlaefer on 2008-04-21 17:49:05 as read along with 1 person tny
  • Protein-RNA interactions: structural analysis and functional classes.
    Proteins, Vol. 66, No. 4. (1 March 2007), pp. 903-911.
    by JJ Ellis, M Broom, S Jones
    posted to protein rna structure by winterschlaefer on 2008-04-21 09:56:24 as ** along with 3 people marck jarasch medic0747
  • Protein-RNA interactions: a structural analysis
    Nucl. Acids Res., Vol. 29, No. 4. (15 February 2001), pp. 943-954.
    by Susan Jones, David T Daley, Nicholas M Luscombe, Helen M Berman, Janet M Thornton
    posted to protein rna structure by winterschlaefer on 2008-04-21 09:55:21 as ** along with 3 people kaarsinogen jarasch medic0747
  • Data-driven modelling of signal-transduction networks
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 11. (2006), pp. 820-828.
    by Kevin A Janes, Michael B Yaffe
    posted to modelling by winterschlaefer on 2008-04-01 13:49:48 as ** along with 4 people and 2 groups shikin jyuh cdppublications cdpwebadmin GeneGo CDP
  • Protein consensus sequence motifs.
    Mol Biotechnol, Vol. 12, No. 3. (October 1999), pp. 241-253.
    by A Aitken
    posted to motif sequence by winterschlaefer on 2008-03-31 21:57:57 as **
  • A new approach to protein fold recognition.
    Nature, Vol. 358, No. 6381. (2 July 1992), pp. 86-89.
    by DT Jones, WR Taylor, JM Thornton
    posted to threading by winterschlaefer on 2008-03-31 14:04:31 as ** along with 1 person chad_davis
  • 14-3-3 proteins: a historic overview.
    Semin Cancer Biol, Vol. 16, No. 3. (June 2006), pp. 162-172.
    by A Aitken
    posted to 14-3-3 by winterschlaefer on 2008-03-31 13:59:33 as read along with 1 person and 1 group jeremymiller GeschwindLab
  • Still Stratus Not Altocumulus: Further Evidence against the Date/Party Hub Distinction
    PLoS Biology, Vol. 5, No. 6. (1 June 2007), e154.
    by Nizar N Batada, Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, Bobby-Joe Breitkreutz, Laurence D Hurst, Mike Tyers
    posted to hubs ppi by winterschlaefer on 2008-03-03 10:42:40 as ** along with 3 people cdeane antonkratz carlk
  • Confirmation of Organized Modularity in the Yeast Interactome
    PLoS Biology, Vol. 5, No. 6. (1 June 2007), e153.
    by Nicolas Bertin, Nicolas Simonis, Denis Dupuy, Michael E Cusick, Jing-Dong J Han, Hunter B Fraser, Frederick P Roth, Marc Vidal
    posted to hubs ppi by winterschlaefer on 2008-03-03 10:41:41 as ** along with 1 person kintoki
  • Stratus Not Altocumulus: A New View of the Yeast Protein Interaction Network.
    PLoS Biol, Vol. 4, No. 10. (19 September 2006)
    by Nizar N N Batada, Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, Bobby-Joe J Breitkreutz, Laurence D D Hurst, Mike Tyers
    posted to hubs ppi by winterschlaefer on 2008-03-03 10:40:57 as ** along with 6 people cdeane carlk aswin jpoyatos iris_2001 Evangelia
  • Evidence for dynamically organized modularity in the yeast protein-protein interaction network
    Nature, Vol. 430, No. 6995. (01 July 2004), pp. 88-93.
    by Jing-Dong J Han, Nicolas Bertin, Tong Hao, Debra S Goldberg, Gabriel F Berriz, Lan V Zhang, Denis Dupuy, Albertha JM Walhout, Michael E Cusick, Frederick P Roth, Marc Vidal
    posted to hubs ppi by winterschlaefer on 2008-03-03 10:39:28 as ** along with 23 people and 2 groups ksiek kintoki ellakat frohike carlk shikin dragonrez lfriedl balajis yoh j3xucite koller mikaelhuss ruvido gcalda grahamc iris_2001 lpfernandes Evangelia cdeane shung phoenixzxl stefanoallesina GeneGo kdl
  • Conservation of Orientation and Sequence in Protein Domain-Domain Interactions
    Journal of Molecular Biology, Vol. 345, No. 5. (2005), pp. 1265-1279.
    by Stephen J Littler, Simon J Hubbard
    posted to conservation ddi sequence structure by winterschlaefer on 2008-02-21 13:41:57 as ** along with 5 people and 2 groups ana bicko Schmidtc cjeans wilbur structural_bioinformatics Bioinformatics
  • The origin and evolution of model organisms.
    Nat Rev Genet, Vol. 3, No. 11. (November 2002), pp. 838-849.
    by SB Hedges
    posted to evolution model_organisms by winterschlaefer on 2008-02-21 11:19:25 as ** along with 1 person fhsantanna
  • Structural Search and Retrieval using a Tableau Representation of Protein Folding Patterns.
    Bioinformatics (5 January 2008)
    by Arun S S Konagurthu, Peter J J Stuckey, Arthur M M Lesk
    posted to bologna08 folding structure by winterschlaefer on 2008-02-18 10:05:12 as **
  • The implications of alternative splicing in the ENCODE protein complement.
    Proc Natl Acad Sci U S A, Vol. 104, No. 13. (27 March 2007), pp. 5495-5500.
    by ML Tress, PL Martelli, A Frankish, GA Reeves, JJ Wesselink, C Yeats, PL Olason, M Albrecht, H Hegyi, A Giorgetti, D Raimondo, J Lagarde, RA Laskowski, G López, MI Sadowski, JD Watson, P Fariselli, I Rossi, A Nagy, W Kai, Z Størling, M Orsini, Y Assenov, H Blankenburg, C Huthmacher, F Ramírez, A Schlicker, F Denoeud, P Jones, S Kerrien, S Orchard, SE Antonarakis, A Reymond, E Birney, S Brunak, R Casadio, R Guigo, J Harrow, H Hermjakob, DT Jones, T Lengauer, C A Orengo, L Patthy, JM Thornton, A Tramontano, A Valencia
    posted to bologna08 splicing structure by winterschlaefer on 2008-02-18 09:45:18 as ** along with 4 people and 4 groups stevanspringer Cortel dchughes antonkratz Bioinformatics FAB-lab G4ID Genetics-of-Gambling
  • Specificity in protein interactions and its relationship with sequence diversity and coevolution.
    Proc Natl Acad Sci U S A (27 April 2007)
    by Luke Hakes, Simon C C Lovell, Stephen G G Oliver, David L L Robertson
    posted to evolution ismb08 ppi by winterschlaefer on 2008-02-17 16:48:12 as ** along with 9 people and 2 groups stevanspringer bjorns cjeans zwang Garamonfok cursonivel1 tale phoenixzxl chrys FAB-lab cursonivel1
  • Evolutionary conservation of domain-domain interactions
    Genome Biology, Vol. 7 (21 December 2006), R125.
    by Zohar Itzhaki, Eyal Akiva, Yael Altuvia, Hanah Margalit
    posted to ddi evolution ismb08 by winterschlaefer on 2008-02-17 15:08:57 as ** along with 2 people and 1 group phoenixzxl grahamc ParkinsonLab_at_MaRS
  • Choosing BLAST options for better detection of orthologs as reciprocal best hits
    Bioinformatics (26 November 2007), btm585.
    by Gabriel Moreno-Hagelsieb, Kristen Latimer
    posted to orthology by winterschlaefer on 2008-02-01 10:09:50 as *** along with 5 people cerca jyuh cjeans renatomilani mclarenv
  • A universal mechanism ties genotype to phenotype in trinucleotide diseases
    PLoS Computational Biology, Vol. preprint, No. 2007. (1 October 2007), e235.eor.
    by Shai Kaplan, Shalev Itzkovitz, Ehud Shapiro
    posted to disease repeat by winterschlaefer on 2007-10-22 09:44:09 as **
  • Mendelian Inheritance in Man and its online version, OMIM.
    Am J Hum Genet, Vol. 80, No. 4. (April 2007), pp. 588-604.
    by Victor A McKusick
    posted to disease human by winterschlaefer on 2007-10-09 20:20:55 as read
  • Gene expression profiling predicts clinical outcome of breast cancer.
    Nature, Vol. 415, No. 6871. (31 January 2002), pp. 530-536.
    by LJ van 't Veer, H Dai, MJ van de Vijver, YD He, AA Hart, M Mao, HL Peterse, K van der Kooy, MJ Marton, AT Witteveen, GJ Schreiber, RM Kerkhoven, C Roberts, PS Linsley, R Bernards, SH Friend
    posted to predictor microarray disease cancer by winterschlaefer on 2007-10-05 10:43:00 as ** along with 12 people and 1 group jo_davies nedwards jfr tuck bedo giovanni frohike Ao_Li2007 lyndon macavity1g Lara waghsk GeschwindLab
  • Coverage and error models of protein-protein interaction data by directed graph analysis
    Genome Biology, Vol. 8 (10 September 2007), R186.
    by Tony Chiang, Denise Scholtens, Deepayan Sarkar, Robert Gentleman, Wolfgang Huber
    posted to error ppi by winterschlaefer on 2007-09-18 10:33:02 as ** along with 5 people Yanno jfr chad_davis grahamc Pao-Yang
  • Assessing performance of orthology detection strategies applied to eukaryotic genomes.
    PLoS ONE, Vol. 2 (2007)
    by F Chen, AJ Mackey, JK Vermunt, DS Roos
    posted to methods orthology by winterschlaefer on 2007-09-07 14:26:43 as ** along with 8 people and 3 groups cerca natstreet icases operon rvosa indigoviolet stajich cjeans EisenLab FAB-lab TNT
  • Gene prioritization through genomic data fusion
    Nature Biotechnology, Vol. 24, No. 5. (05 May 2006), pp. 537-544.
    by Stein Aerts, Diether Lambrechts, Sunit Maity, Peter Van Loo, Bert Coessens, Frederik De Smet, Leon-Charles Tranchevent, Bart De Moor, Peter Marynen, Bassem Hassan, Peter Carmeliet, Yves Moreau
    posted to disease genes by winterschlaefer on 2007-08-28 11:20:17 as ** along with 6 people and 2 groups srp33 jfr balajis dchughes frohike barriot G4ID Genetics-of-Gambling
  • Modelling genotype-phenotype relationships and human disease with genetic interaction networks
    J Exp Biol, Vol. 210, No. 9. (1 May 2007), pp. 1559-1566.
    by Ben Lehner
    posted to disease human network by winterschlaefer on 2007-08-27 15:13:00 as ** along with 1 person balicea
  • Integration of genomic datasets to predict protein complexes in yeast.
    J Struct Funct Genomics, Vol. 2, No. 2. (2002), pp. 71-81.
    by R Jansen, N Lan, J Qian, M Gerstein
    posted to complexes pcfbim07 yeast by winterschlaefer on 2007-08-27 15:07:29 as **
  • A network of protein-protein interactions in yeast.
    Nat Biotechnol, Vol. 18, No. 12. (December 2000), pp. 1257-1261.
    by B Schwikowski, P Uetz, S Fields
    posted to high-throughput ppi yeast by winterschlaefer on 2007-08-27 10:51:26 as ** along with 4 people carlk dragonrez ichbins81 jiny
  • Unequal evolutionary conservation of human protein interactions in interologous networks
    Genome Biology, Vol. 8 (29 May 2007), R95.
    by Kevin R Brown, Igor Jurisica
    posted to evolution interologs ppi by winterschlaefer on 2007-08-24 11:21:34 as ** along with 2 people and 1 group grahamc zwang ParkinsonLab_at_MaRS
  • Comparative assessment of performance and genome dependence among phylogenetic profiling methods
    BMC Bioinformatics, Vol. 7 (27 September 2006), 420.
    by Evan S Snitkin, Adam M Gustafson, Joseph Mellor, Jie Wu, Charles Delisi
    posted to phylogeneticprofiling by winterschlaefer on 2007-08-24 11:05:56 as ** along with 1 person dquest
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