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xdeupis library [293 articles]

Nye artikler sendt til xdeupis bibliotek.
  • Proline-induced distortions of transmembrane helices.
    J Mol Biol, Vol. 323, No. 5. (8 November 2002), pp. 951-960.
    by FS Cordes, JN Bright, MS Sansom
    posted to transmembrane theory structure pro-kink membrane_proteins helix activation by xdeupi on 2008-05-27 11:58:27 as ** along with 1 person thaliana
  • Analysis of side-chain rotamers in transmembrane proteins.
    Biophysical journal, Vol. 87, No. 5. (November 2004), pp. 3460-3469.
    by AK Chamberlain, JU Bowie
    posted to transmembrane thr structure serthr_paper ser membrane_proteins helix hbond flexibility by xdeupi on 2008-05-15 11:35:47 as ** along with 1 person and 1 group carlk LabCompMed
  • Recruitment of beta-arrestin2 to the dopamine D2 receptor: Insights into anti-psychotic and anti-parkinsonian drug receptor signaling.
    Neuropharmacology (8 April 2008)
    by Ib V V Klewe, Søren M M Nielsen, Louise Tarpø, Eneko Urizar, Concetta Dipace, Jonathan A A Javitch, Ulrik Gether, Jan Egebjerg, Kenneth V V Christensen
    posted to pharmacology internalization imaging fluorescence disease binding biased_agonism arrestin agonist active-state activation by xdeupi on 2008-05-13 16:24:49 as **
  • Crystal structure of squid rhodopsin with intracellularly extended cytoplasmic region.
    The Journal of biological chemistry (6 May 2008)
    by Tatsuro Shimamura, Kenji Hiraki, Naoko Takahashi, Tetsuya Hori, Hideo Ago, Katsuyoshi Masuda, Koji Takio, Masaji Ishiguro, Masashi Miyano
    posted to xray structure rhodopsin gpcr cterm crystallography by xdeupi on 2008-05-13 16:19:24 as ** along with 1 group LabCompMed
  • Crystallizing thinking about the beta2-adrenergic receptor.
    Mol Pharmacol (31 January 2008)
    by Arun K K Shukla, Jin-Peng P Sun, Robert J J Lefkowitz
    posted to review gpcr crystallography b2ar by xdeupi on 2008-05-13 16:09:07 as ** along with 2 people merj tkershaw
  • Transmembrane helix uniformity examined by spectral mapping of torsion angles.
    Structure (London, England : 1993), Vol. 16, No. 5. (May 2008), pp. 787-797.
    by RC Page, S Kim, TA Cross
    posted to transmembrane structure helix hbond by xdeupi on 2008-05-13 16:04:28 as **
  • Uniformity, ideality, and hydrogen bonds in transmembrane alpha-helices.
    Biophysical journal, Vol. 83, No. 4. (October 2002), pp. 2084-2095.
    by S Kim, TA Cross
    posted to transmembrane structure retinal_binding_proteins helix hbond flexibility by xdeupi on 2008-05-13 16:00:40 as **
  • Clinical consequences of ADR2 polymorphisms
    Pharmacogenomics, Vol. 9, No. 3. (March 2008), pp. 349-358.
    by Hawkins, A Gregory, Weiss, T Scott, Bleecker, R Eugene
    posted to review polymorphism pharmacology genome drug disease b2ar by xdeupi on 2008-05-03 17:12:39 as **
  • Mechanisms of Inter- and Intramolecular Communication in GPCRs and G Proteins
    J. Am. Chem. Soc. (12 March 2008)
    by F Raimondi, M Seeber, PG Debenedetti, F Fanelli
    posted to gproteins gpcr docking activation by xdeupi on 2008-05-03 17:09:50 as ** along with 1 person paulschlesinger
  • The specificity of binding of glycoprotein hormones to their receptors.
    Cellular and molecular life sciences : CMLS (26 April 2008)
    by G Caltabiano, M Campillo, A De Leener, G Smits, G Vassart, S Costagliola, L Pardo
    posted to thyrotropin modeling hormone activation by xdeupi on 2008-05-03 17:06:33 as ** along with 1 group LabCompMed
  • Functional assays as prismatic views of drug activity: relevance to new drug discovery.
    Journal of receptor and signal transduction research, Vol. 28, No. 1. (2008), pp. 109-125.
    by T Kenakin
    posted to review pharmacology drug chemokine biased_agonism by xdeupi on 2008-05-03 17:03:08 as **
  • Computational analysis of membrane proteins: genomic occurrence, structure prediction and helix interactions.
    Q Rev Biophys, Vol. 37, No. 2. (May 2004), pp. 121-146.
    by U Lehnert, Y Xia, TE Royce, CS Goh, Y Liu, A Senes, H Yu, ZL Zhang, DM Engelman, M Gerstein
    posted to transmembrane theory structure serthr_paper review membrane_proteins by xdeupi on 2008-05-01 19:11:17 as ***** along with 1 person thaliana
  • Stable Interactions Between the Transmembrane Domains of the Adenosine A2A Receptor.
    Protein science : a publication of the Protein Society (23 April 2008)
    by Damien Thevenin, Tzvetana Lazarova
    posted to transmembrane structure gpcr folding by xdeupi on 2008-04-28 11:00:29 as ** along with 1 person IrinaMoreira
  • notes Transmembrane proteins in the Protein Data Bank: identification and classification.
    Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 2964-2972.
    by GE Tusnády, Z Dosztányi, I Simon
    posted to helix membrane_proteins structure by xdeupi on 2008-04-08 13:55:52 as ** along with 2 people and 1 group chrn sebk LabCompMed
  • Retinylidene proteins: structures and functions from archaea to humans.
    Annual review of cell and developmental biology, Vol. 16 (2000), pp. 365-392.
    by JL Spudich, CS Yang, KH Jung, EN Spudich
    posted to retinal retinal_binding_proteins review rhodopsin structure by xdeupi on 2008-04-08 11:33:18 as ** along with 1 group LabCompMed
  • Crystal structure of rhodopsin: implications for vision and beyond.
    Current opinion in structural biology, Vol. 11, No. 4. (August 2001), pp. 420-426.
    by T Okada, K Palczewski
    posted to retinal retinal_binding_proteins review rhodopsin structure by xdeupi on 2008-04-08 11:29:02 as ** along with 1 group LabCompMed
  • notes Protein-Protein Docking with Backbone Flexibility
    Journal of Molecular Biology, Vol. 373, No. 2. (19 October 2007), pp. 503-519.
    by Chu Wang, Philip Bradley, David Baker
    posted to docking flexibility modeling theory by xdeupi on 2008-04-07 14:23:45 as ** along with 3 people and 2 groups barry jwm Ema structural_bioinformatics Bioinformatics
  • notes Protein-Protein Docking with Simultaneous Optimization of Rigid-body Displacement and Side-chain Conformations
    Journal of Molecular Biology, Vol. 331, No. 1. (1 August 2003), pp. 281-299.
    by Jeffrey J Gray, Stewart Moughon, Chu Wang, Ora Schueler-Furman, Brian Kuhlman, Carol A Rohl, David Baker
    posted to dimer docking modeling theory by xdeupi on 2008-04-07 14:18:56 as ** along with 4 people timg ima bluvsh1 selrac
  • The relation between the divergence of sequence and structure in proteins.
    EMBO J, Vol. 5, No. 4. (April 1986), pp. 823-826.
    by C Chothia, AM Lesk
    posted to sequence structure theory by xdeupi on 2008-04-02 15:48:23 as ** along with 7 people and 6 groups ana pansapiens jwm Einat marcius ffranca insectopalo structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF
  • FRET Study of Membrane Proteins: Simulation-Based Fitting for Analysis of Membrane Protein Embedment and Association
    Biophys. J., Vol. 91, No. 2. (15 July 2006), pp. 454-466.
    by Petr V Nazarov, Rob B Koehorst, Werner L Vos, Vladimir V Apanasovich, Marcus A Hemminga
    posted to dimer fluorescence fret theory by xdeupi on 2008-04-02 13:50:03 as ***** along with 1 person dimka
  • Chemogenomic approaches to rational drug design
    Br J Pharmacol, Vol. 152, No. 1. (29 May 2007), pp. 38-52.
    by D Rognan
    posted to agonist binding drug ligands pharmacology priviledged_structures by xdeupi on 2008-03-28 15:54:47 as ** along with 3 people and 3 groups jyuh jmrivort jerome_ucsf_slb LabCompMed G-quadruplex Supramolecular
  • Efficient coupling of transducin to monomeric rhodopsin in a phospholipid bilayer.
    J Biol Chem (22 November 2007)
    by Matthew R R Whorton, Beata Jastrzebska, Paul S-H S Park, Dimitrios Fotiadis, Andreas Engel, Krzysztof Palczewski, Roger K K Sunahara
    posted to activation dimer gproteins rhodopsin by xdeupi on 2008-03-12 17:12:36 as ** along with 1 person and 1 group gcaltabiano LabCompMed
  • Mapping of contact sites in complex formation between transducin and light-activated rhodopsin by covalent crosslinking: use of a photoactivatable reagent.
    Proc Natl Acad Sci U S A, Vol. 98, No. 9. (24 April 2001), pp. 4877-4882.
    by K Cai, Y Itoh, HG Khorana
    posted to activation active-state gproteins icl3 rhodopsin by xdeupi on 2008-03-12 15:47:55 as **
  • Mapping of contact sites in complex formation between light-activated rhodopsin and transducin by covalent crosslinking: use of a chemically preactivated reagent.
    Proc Natl Acad Sci U S A, Vol. 98, No. 9. (24 April 2001), pp. 4883-4887.
    by Y Itoh, K Cai, HG Khorana
    posted to active-state gproteins icl3 rhodopsin by xdeupi on 2008-03-12 15:46:28 as **
  • Heterotrimeric G protein activation by G-protein-coupled receptors.
    Nat Rev Mol Cell Biol (28 November 2007)
    by William M M Oldham, Heidi E E Hamm
    posted to activation erc_grant gproteins rhodopsin by xdeupi on 2008-03-11 14:30:28 as ** along with 4 people and 2 groups laurabailey dchughes Fritz mingzhi neurolit LabCompMed
  • notes Chloroethylclonidine and 2-aminoethyl methanethiosulfonate recognize two different conformations of the human alpha(2A)-adrenergic receptor.
    J Biol Chem, Vol. 274, No. 31. (30 July 1999), pp. 21867-21872.
    by A Marjamäki, H Frang, M Pihlavisto, AM Hoffrén, T Salminen, MS Johnson, J Kallio, JA Javitch, M Scheinin
    posted to activation binding cys_scanning drug ligands tm5 by xdeupi on 2008-03-07 15:14:37 as ** along with 1 group LabCompMed
  • Identification of the Binding Sites of the SR49059 Nonpeptide Antagonist into the V1a Vasopressin Receptor Using Sulfydryl-reactive Ligands and Cysteine Mutants as Chemical Sensors
    J. Biol. Chem., Vol. 278, No. 41. (10 October 2003), pp. 40010-40019.
    by Chouaib Tahtaoui, Marie-Noelle Balestre, Philippe Klotz, Didier Rognan, Claude Barberis, Bernard Mouillac, Marcel Hibert
    posted to binding cys_scanning peptide vasopressin by xdeupi on 2008-02-28 16:16:02 as **
  • Transducin activation by nanoscale lipid bilayers containing one and two rhodopsins.
    J Biol Chem, Vol. 282, No. 20. (18 May 2007), pp. 14875-14881.
    by TH Bayburt, AJ Leitz, G Xie, DD Oprian, SG Sligar
    posted to activation dimer lipids rhodopsin by xdeupi on 2008-02-27 11:06:04 as ***
  • beta-Arrestin-biased Agonism at the beta2-Adrenergic Receptor.
    J Biol Chem, Vol. 283, No. 9. (29 February 2008), pp. 5669-5676.
    by MT Drake, JD Violin, EJ Whalen, JW Wisler, SK Shenoy, RJ Lefkowitz
    posted to activation agonist arrestin b2ar biased_agonism drug gproteins imaging internalization ligands pharmacology by xdeupi on 2008-02-27 10:39:07 as *** along with 1 group LabCompMed
  • Chemistry. Following the flow of energy in biomolecules.
    Science, Vol. 310, No. 5750. (11 November 2005), pp. 980-982.
    by PM Champion
    posted to activation retinal review rhodopsin by xdeupi on 2007-07-30 17:02:29 as **** along with 1 group LabCompMed
  • Proton movement and photointermediate kinetics in rhodopsin mutants.
    Biochemistry, Vol. 45, No. 17. (2 May 2006), pp. 5430-5439.
    by JW Lewis, I Szundi, MA Kazmi, TP Sakmar, DS Kliger
    posted to activation protonation rhodopsin by xdeupi on 2007-07-30 17:00:28 as ** along with 1 group LabCompMed
  • Primary photoprocess in vision: minimal motion to reach the photo- and bathorhodopsin intermediates.
    J Phys Chem B, Vol. 109, No. 18. (12 May 2005), pp. 9104-9110.
    by F Blomgren, S Larsson
    posted to activation retinal rhodopsin theory by xdeupi on 2007-07-30 16:59:24 as ** along with 1 group LabCompMed
  • Photoisomerization mechanism of rhodopsin and 9-cis-rhodopsin revealed by x-ray crystallography.
    Biophys J, Vol. 92, No. 12. (15 June 2007)
    by H Nakamichi, V Buss, T Okada
    posted to activation retinal rhodopsin by xdeupi on 2007-07-30 16:57:47 as ** along with 1 group LabCompMed
  • Coupling of retinal isomerization to the activation of rhodopsin
    PNAS, Vol. 101, No. 27. (6 July 2004), pp. 10048-10053.
    by Ashish B Patel, Evan Crocker, Markus Eilers, Amiram Hirshfeld, Mordechai Sheves, Steven O Smith
    posted to activation active-state nmr retinal rhodopsin by xdeupi on 2007-07-30 15:16:18 as ** along with 1 group LabCompMed
  • The G protein-coupled receptor kinase (GRK) interactome: role of GRKs in GPCR regulation and signaling.
    Biochim Biophys Acta, Vol. 1768, No. 4. (April 2007), pp. 913-922.
    by C Ribas, P Penela, C Murga, A Salcedo, C García-Hoz, M Jurado-Pueyo, I Aymerich, F Mayor
    posted to activation arrestin gpcr grk by xdeupi on 2007-07-30 14:59:43 as ** along with 1 group LabCompMed
  • A concept for G protein activation by G protein-coupled receptor dimers: the transducin/rhodopsin interface.
    Photochem Photobiol Sci, Vol. 3, No. 6. (June 2004), pp. 628-638.
    by S Filipek, KA Krzysko, D Fotiadis, Y Liang, DA Saperstein, A Engel, K Palczewski
    posted to active-state gproteins modeling rhodopsin structure by xdeupi on 2007-07-11 16:54:09 as ** along with 1 person and 1 group cen4ik LabCompMed
  • Refinement of a homology model of the mu-opioid receptor using distance constraints from intrinsic and engineered zinc-binding sites.
    Biochemistry, Vol. 43, No. 27. (13 July 2004), pp. 8700-8710.
    by CB Fowler, ID Pogozheva, H LeVine, HI Mosberg
    posted to active-state modeling opioid structure theory by xdeupi on 2007-07-11 16:51:53 as ** along with 1 person and 1 group merj LabCompMed
  • Complex of an active mu-opioid receptor with a cyclic peptide agonist modeled from experimental constraints.
    Biochemistry, Vol. 43, No. 50. (21 December 2004), pp. 15796-15810.
    by CB Fowler, ID Pogozheva, AL Lomize, H LeVine, HI Mosberg
    posted to active-state gproteins modeling opioid structure by xdeupi on 2007-07-11 16:50:15 as ** along with 1 group LabCompMed
  • Modeling of the complex between transducin and photoactivated rhodopsin, a prototypical G-protein-coupled receptor.
    Biochemistry, Vol. 46, No. 16. (24 April 2007), pp. 4734-4744.
    by GV Nikiforovich, CM Taylor, GR Marshall
    posted to gproteins modeling rhodopsin by xdeupi on 2007-07-11 11:05:58 as ** along with 1 group LabCompMed
  • Formation of Transmembrane Helices In Vivo--Is Hydrophobicity All that Matters?
    J. Gen. Physiol., Vol. 129, No. 5. (30 April 2007), pp. 353-356.
    by Gunnar von Heijne
    posted to helix membrane_proteins review structure transmembrane by xdeupi on 2007-06-29 21:20:58 as ** along with 1 person and 1 group thaliana LabCompMed
  • Critical role for the second extracellular loop in the binding of both orthosteric and allosteric G protein-coupled receptor ligands.
    J Biol Chem (25 June 2007)
    by Vimesh A A Avlani, Karen J J Gregory, Craig J J Morton, Michael W W Parker, Patrick M M Sexton, Arthur Christopoulos
    posted to activation binding ecl2 ligands loops structure by xdeupi on 2007-06-29 21:12:42 as ** along with 1 group LabCompMed
  • G-protein-coupled receptor signalling through protein networks.
    Biochem Soc Trans, Vol. 35, No. Pt 1. (February 2007), pp. 23-27.
    by AD Strosberg, C Nahmias
    posted to b2ar gpcr pharmacology review structure by xdeupi on 2007-06-29 21:10:57 as ** along with 1 group LabCompMed
  • Development and testing of a general amber force field.
    J Comput Chem, Vol. 25, No. 9. (15 July 2004), pp. 1157-1174.
    by J Wang, RM Wolf, JW Caldwell, PA Kollman, DA Case
    posted to amber dynamics md theory by xdeupi on 2007-06-26 13:51:26 as ** along with 8 people and 1 group nigham lillekatt simone gane5h kazemi megs easybakemuffin AndreaColetta LabCompMed
  • Performance of the general amber force field in modeling aqueous POPC membrane bilayers.
    J Comput Chem, Vol. 28, No. 12. (12 April 2007), pp. 2051-2058.
    by Balázs Jójárt, Tamás A A Martinek
    posted to amber dynamics md membrane modeling theory by xdeupi on 2007-06-26 13:32:45 as ** along with 2 people and 1 group easybakemuffin viktor21614 LabCompMed
  • Effect of different treatments of long-range interactions and sampling conditions in molecular dynamic simulations of rhodopsin embedded in a dipalmitoyl phosphatidylcholine bilayer.
    J Comput Chem (31 January 2007)
    by Arnau Cordomí, Olle Edholm, Juan J J Perez
    posted to dynamics md membrane rhodopsin theory by xdeupi on 2007-06-25 10:30:55 as ** along with 2 people and 1 group patricia arnaucordomi LabCompMed
  • Heterologous Expression of the Adenosine A1 Receptor in Transgenic Mouse Retina.
    Biochemistry (20 June 2007)
    by Ning Li, David Salom, Li Zhang, Tim Harris, Juan A Ballesteros, Marcin Golczak, Beata Jastrzebska, Krzysztof Palczewski, Carole Kurahara, Todd Juan, Steven Jordan, John A Salon
    posted to expression gpcr pharmacology by xdeupi on 2007-06-25 10:09:54 as ** along with 1 group LabCompMed
  • Comparison of stability predictions and simulated unfolding of rhodopsin structures.
    Photochem Photobiol, Vol. 83, No. 2. (r 2007), pp. 351-363.
    by O Tastan, E Yu, M Ganapathiraju, A Aref, AJ Rader, J Klein-Seetharaman
    posted to folding helix membrane_proteins mutation rhodopsin structure transmembrane by xdeupi on 2007-06-25 10:08:49 as ** along with 1 group LabCompMed
  • Refinement of Protein Structures by Iterative Comparative Modeling and CryoEM Density Fitting
    Journal of Molecular Biology, Vol. 357, No. 5. (14 April 2006), pp. 1655-1668.
    by Maya Topf, Matthew L Baker, Marc A Marti-Renom, Wah Chiu, Andrej Sali
    posted to crystallography em modeling structure theory by xdeupi on 2007-06-12 11:28:16 as ** along with 1 group LabCompMed
  • The membrane protein universe: what's out there and why bother?
    Journal of Internal Medicine, Vol. 261, No. 6. (June 2007), pp. 543-557.
    by Von Heijne,
    posted to membrane_proteins review by xdeupi on 2007-06-11 10:28:32 as ***** along with 2 people and 1 group jyuh andreasauerwein LabCompMed
  • Structures and spectral signatures of protonated water networks in bacteriorhodopsin.
    Proc Natl Acad Sci U S A, Vol. 104, No. 17. (24 April 2007), pp. 6980-6985.
    by G Mathias, D Marx
    posted to activation gpcr protonation retinal_binding_proteins rhodopsin theory water by xdeupi on 2007-06-11 10:25:44 as *** along with 1 person and 1 group saravan LabCompMed
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