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xdeupis transmembrane [44 articles]

Artikler nylig sendt til xdeupis bibliotek klassifisert med nøkkelordet transmembrane. You can also see everyone's transmembrane.
  • Proline-induced distortions of transmembrane helices.
    J Mol Biol, Vol. 323, No. 5. (8 November 2002), pp. 951-960.
    by FS Cordes, JN Bright, MS Sansom
    posted to activation helix membrane_proteins pro-kink structure theory transmembrane by xdeupi on 2008-05-27 11:58:27 as ** along with 1 person thaliana
  • Analysis of side-chain rotamers in transmembrane proteins.
    Biophysical journal, Vol. 87, No. 5. (November 2004), pp. 3460-3469.
    by AK Chamberlain, JU Bowie
    posted to flexibility hbond helix membrane_proteins ser serthr_paper structure thr transmembrane by xdeupi on 2008-05-15 11:35:47 as ** along with 1 person and 1 group carlk LabCompMed
  • Transmembrane helix uniformity examined by spectral mapping of torsion angles.
    Structure (London, England : 1993), Vol. 16, No. 5. (May 2008), pp. 787-797.
    by RC Page, S Kim, TA Cross
    posted to hbond helix structure transmembrane by xdeupi on 2008-05-13 16:04:28 as **
  • Uniformity, ideality, and hydrogen bonds in transmembrane alpha-helices.
    Biophysical journal, Vol. 83, No. 4. (October 2002), pp. 2084-2095.
    by S Kim, TA Cross
    posted to flexibility hbond helix retinal_binding_proteins structure transmembrane by xdeupi on 2008-05-13 16:00:40 as **
  • Computational analysis of membrane proteins: genomic occurrence, structure prediction and helix interactions.
    Q Rev Biophys, Vol. 37, No. 2. (May 2004), pp. 121-146.
    by U Lehnert, Y Xia, TE Royce, CS Goh, Y Liu, A Senes, H Yu, ZL Zhang, DM Engelman, M Gerstein
    posted to membrane_proteins review serthr_paper structure theory transmembrane by xdeupi on 2008-05-01 19:11:17 as ***** along with 1 person thaliana
  • Stable Interactions Between the Transmembrane Domains of the Adenosine A2A Receptor.
    Protein science : a publication of the Protein Society (23 April 2008)
    by Damien Thevenin, Tzvetana Lazarova
    posted to folding gpcr structure transmembrane by xdeupi on 2008-04-28 11:00:29 as ** along with 1 person IrinaMoreira
  • Formation of Transmembrane Helices In Vivo--Is Hydrophobicity All that Matters?
    J. Gen. Physiol., Vol. 129, No. 5. (30 April 2007), pp. 353-356.
    by Gunnar von Heijne
    posted to helix membrane_proteins review structure transmembrane by xdeupi on 2007-06-29 21:20:58 as ** along with 1 person and 1 group thaliana LabCompMed
  • Comparison of stability predictions and simulated unfolding of rhodopsin structures.
    Photochem Photobiol, Vol. 83, No. 2. (r 2007), pp. 351-363.
    by O Tastan, E Yu, M Ganapathiraju, A Aref, AJ Rader, J Klein-Seetharaman
    posted to folding helix membrane_proteins mutation rhodopsin structure transmembrane by xdeupi on 2007-06-25 10:08:49 as ** along with 1 group LabCompMed
  • Folding Amphipathic Helices Into Membranes: Amphiphilicity Trumps Hydrophobicity.
    J Mol Biol (22 May 2007)
    by Mónica Fernández-Vidal, Sajith Jayasinghe, Alexey S S Ladokhin, Stephen H H White
    posted to folding helix membrane_proteins transmembrane by xdeupi on 2007-06-02 19:22:34 as ** along with 1 group LabCompMed
  • Formation of Transmembrane Helices In Vivo--Is Hydrophobicity All that Matters?
    J Cell Biol, Vol. 177, No. 4. (21 May 2007)
    by G von Heijne
    posted to helix membrane_proteins transmembrane by xdeupi on 2007-05-28 08:52:53 as ** along with 1 group LabCompMed
  • Helix packing moments reveal diversity and conservation in membrane protein structure.
    J Mol Biol, Vol. 337, No. 3. (26 March 2004), pp. 713-729.
    by W Liu, M Eilers, AB Patel, SO Smith
    posted to gpcr helix membrane_proteins rhodopsin sequence ser structure transmembrane by xdeupi on 2007-04-26 13:49:38 as ***** along with 1 group LabCompMed
  • Setting up and running molecular dynamics simulations of membrane proteins.
    Methods, Vol. 41, No. 4. (April 2007), pp. 475-488.
    by C Kandt, WL Ash, D Peter Tieleman
    posted to dynamics md membrane modeling review transmembrane by xdeupi on 2007-03-26 10:15:17 as ***** along with 1 person and 2 groups sobolevnrm LabCompMed baker-group
  • Discontinuous membrane helices in transport proteins and their correlation with function.
    J Struct Biol (1 February 2007)
    by Emanuela Screpanti, Carola Hunte
    posted to channel membrane_proteins structure transmembrane by xdeupi on 2007-03-21 11:35:11 as ** along with 1 person and 1 group Guff32 LabCompMed
  • From Interactions of Single Transmembrane Helices to Folding of alpha-Helical Membrane Proteins: Analyzing Transmembrane Helix-Helix Interactions in Bacteria.
    Curr Protein Pept Sci, Vol. 8, No. 1. (February 20067), pp. 45-61.
    by Dirk Schneider, Carmen Finger, Alexander Prodöhl, Thomas Volkmer
    posted to helix membrane_proteins review sequence structure transmembrane by xdeupi on 2007-02-26 09:06:23 as ** along with 1 group LabCompMed
  • Progress in structure prediction of alpha-helical membrane proteins.
    Curr Opin Struct Biol (3 July 2006)
    by Sarel J J Fleishman, Nir Ben-Tal
    posted to helix membrane_proteins review structure transmembrane by xdeupi on 2007-02-13 15:11:51 as ***** along with 1 person and 1 group wouterboomsma LabCompMed
  • How protein transmembrane segments sense the lipid environment.
    Biochemistry, Vol. 46, No. 6. (13 February 2007), pp. 1457-1465.
    by TK Nyholm, S Ozdirekcan, JA Killian
    posted to helix lipids membrane_proteins transmembrane by xdeupi on 2007-02-13 14:59:06 as ** along with 3 people and 1 group andreasauerwein netterpaladin sebk LabCompMed
  • Membrane-protein topology
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 12., pp. 909-918.
    by Gunnar von Heijne
    posted to transmembrane structure review membrane_proteins lmc_101 genome by xdeupi on 2006-12-11 10:31:16 as ** along with 3 people and 3 groups dchughes nm merj G4ID LabCompMed Genetics-of-Gambling
  • Dynamic helix interactions in transmembrane signaling.
    Cell, Vol. 127, No. 3. (3 November 2006), pp. 447-450.
    by EE Matthews, M Zoonens, DM Engelman
    posted to activation dynamics helix review transmembrane by xdeupi on 2006-11-14 16:44:32 as ***** along with 2 people and 1 group gcaltabiano ndoelker LabCompMed
  • dummy
    by Dummy
    posted to 5ht1a activation agonist amber amine arrestin b2ar bimane binding cam ccr5 channel chemokine chimera crystallography cterm cxcr1 d250 dimer disease drug dry dynamics ecl2 evolution expression fluorescence folding fret genome gly gpcr gproteins hbond helix helix8 histamine hormone icl3 imaging internalization ionic leukotriene lhr ligands lipids lock loops md membrane modeling mutation n745 n749 nmr no-tag npxxy nterm opioid pharmacology polymorphism pro-kink protonation review rhodopsin s542 sequence ser spin_labeling structure switch test thr thyrotropin tm2 tm3 tm5 tm6 tm7 toggle transmembrane trp txp w648 by xdeupi on 2006-10-30 12:30:16 as ** along with 2 people and 1 group jessicaopacic ivanrt LabCompMed
  • An amino acid "transmembrane tendency" scale that approaches the theoretical limit to accuracy for prediction of transmembrane helices: relationship to biological hydrophobicity.
    Protein Sci, Vol. 15, No. 8. (August 2006), pp. 1987-2001.
    by G Zhao, E London
    posted to helix sequence transmembrane by xdeupi on 2006-10-27 09:46:58 as ** along with 1 group LabCompMed
  • Helix-packing motifs in membrane proteins.
    Proc Natl Acad Sci U S A (5 September 2006)
    by R F S F Walters, W F F Degrado
    posted to folding helix membrane modeling sequence structure transmembrane by xdeupi on 2006-09-13 10:25:08 as **** along with 4 people and 1 group thaliana dgront sebk chgjb LabCompMed
  • Mutational and bioinformatics analysis of proline- and glycine-rich motifs in vesicular acetylcholine transporter
    Journal of Neurochemistry, Vol. 98, No. 5. (September 2006), pp. 1551-1559.
    by Chandrasekaran, Ananda, Ojeda, M Ana, Kolmakova, G Natalia, Parsons, M Stanley
    posted to activation channel gly helix mutation pro-kink structure transmembrane by xdeupi on 2006-09-05 11:43:55 as ** along with 1 group LabCompMed
  • Asymmetric stability among the transmembrane helices of lactose permease.
    Biochemistry, Vol. 45, No. 26. (4 July 2006), pp. 8088-8095.
    by M Bennett, R D'Rozario, MS Sansom, PL Yeagle
    posted to activation dynamics helix md modeling structure transmembrane by xdeupi on 2006-09-05 11:09:02 as ** along with 1 group LabCompMed
  • ZPRED: Predicting the distance to the membrane center for residues in alpha-helical membrane proteins.
    Bioinformatics, Vol. 22, No. 14. (15 July 2006)
    by E Granseth, H Viklund, A Elofsson
    posted to helix loops membrane modeling structure transmembrane by xdeupi on 2006-09-05 10:16:39 as ***** along with 2 people and 1 group thaliana chrn LabCompMed
  • Lipid Solvation Effects Contribute to the Affinity of Gly-xxx-Gly Motif-Mediated Helix-Helix Interactions.
    Biochemistry, Vol. 45, No. 28. (18 July 2006), pp. 8507-8515.
    by RM Johnson, A Rath, RA Melnyk, CM Deber
    posted to dimer gly helix lipids transmembrane by xdeupi on 2006-07-24 11:49:04 as ** along with 1 person and 1 group viktor21614 LabCompMed
  • How strongly do sequence conservation patterns and empirical scales correlate with exposure patterns of transmembrane helices of membrane proteins?
    Biopolymers (12 July 2006)
    by Yungki Park, Volkhard Helms
    posted to helix sequence transmembrane by xdeupi on 2006-07-24 11:46:23 as ** along with 1 person and 1 group thaliana LabCompMed
  • Molecular Dynamics Simulations of GlpF in a Micelle vs in a Bilayer: Conformational Dynamics of a Membrane Protein as a Function of Environment.
    J Phys Chem B Condens Matter Mater Surf Interfaces Biophys, Vol. 109, No. 1. (13 January 2005), pp. 575-582.
    by G Patargias, PJ Bond, SS Deol, MS Sansom
    posted to crystallography dynamics membrane structure transmembrane by xdeupi on 2006-07-24 10:25:16 as ** along with 1 person and 1 group paulschlesinger LabCompMed
  • A two-entropies analysis to identify functional positions in the transmembrane region of class A G protein-coupled receptors.
    Proteins, Vol. 63, No. 4. (1 June 2006), pp. 1018-1030.
    by K Ye, EW Lameijer, MW Beukers, AP Ijzerman
    posted to activation gpcr sequence transmembrane by xdeupi on 2006-07-24 10:21:33 as **** along with 2 people and 1 group cen4ik cat_worth LabCompMed
  • TRAJELIX: A Computational Tool for the Geometric Characterization of Protein Helices During Molecular Dynamics Simulations
    Journal of Computer-Aided Molecular Design, Vol. 20, No. 2. (February 2006), pp. 97-107.
    by Mezei, Mihaly, Filizola, Marta
    posted to md modeling structure transmembrane by xdeupi on 2006-07-21 12:20:38 as ** along with 1 group LabCompMed
  • Metal Ion Site Engineering Indicates a Global Toggle Switch Model for Seven-transmembrane Receptor Activation.
    J Biol Chem, Vol. 281, No. 25. (23 June 2006), pp. 17337-17346.
    by CE Elling, TM Frimurer, LO Gerlach, R Jorgensen, B Holst, TW Schwartz
    posted to activation b2ar modeling pro-kink structure switch toggle transmembrane by xdeupi on 2006-07-04 12:17:13 as read along with 1 person and 1 group IrinaMoreira LabCompMed
  • Folding of helical membrane proteins: the role of polar, GxxxG-like and proline motifs.
    Curr Opin Struct Biol, Vol. 14, No. 4. (August 2004), pp. 465-479.
    by A Senes, DE Engel, WF DeGrado
    posted to folding gly membrane pro-kink sequence ser structure transmembrane by xdeupi on 2006-05-22 10:55:10 as **** along with 1 person and 1 group thaliana LabCompMed
  • The Calpha ---H...O hydrogen bond: a determinant of stability and specificity in transmembrane helix interactions.
    Proc Natl Acad Sci U S A, Vol. 98, No. 16. (31 July 2001), pp. 9056-9061.
    by A Senes, I Ubarretxena-Belandia, DM Engelman
    posted to folding gly hbond membrane transmembrane by xdeupi on 2006-05-22 10:17:00 as ** along with 1 person and 1 group thaliana LabCompMed
  • Statistical analysis of amino acid patterns in transmembrane helices: the GxxxG motif occurs frequently and in association with beta-branched residues at neighboring positions.
    J Mol Biol, Vol. 296, No. 3. (25 February 2000), pp. 921-936.
    by A Senes, M Gerstein, DM Engelman
    posted to dimer folding gly helix membrane transmembrane by xdeupi on 2006-05-22 10:15:33 as read along with 1 group LabCompMed
  • The evolution of transmembrane helix kinks and the structural diversity of G protein-coupled receptors.
    Proc Natl Acad Sci U S A, Vol. 101, No. 4. (27 January 2004), pp. 959-963.
    by S Yohannan, S Faham, D Yang, JP Whitelegge, JU Bowie
    posted to transmembrane structure sequence pro-kink mutation lmc_101 helix evolution by xdeupi on 2006-05-15 15:16:00 as ** along with 1 person and 1 group thaliana LabCompMed
  • The role of extra-membranous inter-helical loops in helix-helix interactions.
    Protein Eng Des Sel, Vol. 18, No. 12. (December 2005), pp. 563-570.
    by MB Ulmschneider, DP Tieleman, MS Sansom
    posted to dynamics helix loops md membrane transmembrane by xdeupi on 2006-03-06 09:46:32 as read along with 2 people and 1 group thaliana allanlo LabCompMed
  • A chemogenomic analysis of the transmembrane binding cavity of human G-protein-coupled receptors.
    Proteins, Vol. 62, No. 2. (1 February 2006), pp. 509-538.
    by JS Surgand, J Rodrigo, E Kellenberger, D Rognan
    posted to binding gpcr ligands transmembrane by xdeupi on 2006-03-01 16:33:01 as ***** along with 1 group LabCompMed
  • Conformational dynamics of M2 helices in KirBac channels: helix flexibility in relation to gating via molecular dynamics simulations.
    Biochemistry, Vol. 44, No. 44. (8 November 2005), pp. 14586-14594.
    by A Grottesi, C Domene, B Hall, MS Sansom
    posted to activation channel dynamics md membrane modeling transmembrane by xdeupi on 2006-02-20 09:24:41 as read along with 1 person and 1 group dimka LabCompMed
  • Molecular dynamics simulations of large integral membrane proteins with an implicit membrane model.
    J Phys Chem B Condens Matter Mater Surf Interfaces Biophys, Vol. 110, No. 1. (12 January 2006), pp. 548-556.
    by S Tanizaki, M Feig
    posted to dynamics membrane modeling transmembrane by xdeupi on 2006-02-20 09:15:18 as ** along with 1 person and 1 group dimka LabCompMed
  • Evaluating Tilt Angles of Membrane-Associated Helices: Comparison of Computational and NMR Techniques
    Biophys. J., Vol. 90, No. 5. (1 March 2006), pp. 1650-1660.
    by Martin B Ulmschneider, Mark S Sansom, Alfredo Di Nola
    posted to helix membrane modeling structure transmembrane by xdeupi on 2006-02-10 09:49:58 as ***** along with 2 people and 1 group thaliana loison LabCompMed
  • Missense mutations in transmembrane domains of proteins: phenotypic propensity of polar residues for human disease.
    Proteins, Vol. 54, No. 4. (1 March 2004), pp. 648-656.
    by AW Partridge, AG Therien, CM Deber
    posted to disease mutation ser transmembrane by xdeupi on 2006-01-27 14:31:44 as ** along with 1 group LabCompMed
  • Self-association of Transmembrane alpha-Helices in Model Membranes: IMPORTANCE OF HELIX ORIENTATION AND ROLE OF HYDROPHOBIC MISMATCH.
    J Biol Chem, Vol. 280, No. 47. (25 November 2005), pp. 39324-39331.
    by Emma Sparr, Walter L L Ash, Petr V V Nazarov, Dirk T S T Rijkers, Marcus A A Hemminga, D Peter P Tieleman, J Antoinette A Killian
    posted to helix transmembrane by xdeupi on 2005-11-22 19:50:55 as *** along with 1 group LabCompMed
  • Tryptophan Supports Interaction of Transmembrane Helices.
    J Mol Biol (21 October 2005)
    by Anja Ridder, Paulina Skupjen, Stephanie Unterreitmeier, Dieter Langosch
    posted to helix transmembrane trp by xdeupi on 2005-11-11 22:08:07 as ** along with 1 person and 1 group thaliana LabCompMed
  • The binding site of aminergic G protein-coupled receptors: the transmembrane segments and second extracellular loop.
    Annu Rev Pharmacol Toxicol, Vol. 42 (2002), pp. 437-467.
    by L Shi, JA Javitch
    posted to agonist binding ecl2 gpcr helix loops transmembrane by xdeupi on 2005-11-01 01:00:19 as ** along with 1 person and 1 group IrinaMoreira LabCompMed
  • The TXP motif in the second transmembrane helix of CCR5. A structural determinant of chemokine-induced activation.
    J Biol Chem, Vol. 276, No. 16. (20 April 2001), pp. 13217-13225.
    by C Govaerts, C Blanpain, X Deupi, S Ballet, JA Ballesteros, SJ Wodak, G Vassart, L Pardo, M Parmentier
    posted to ccr5 helix tm2 transmembrane txp by xdeupi on 2005-10-25 03:18:46 as ** along with 1 person and 1 group tkershaw LabCompMed
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